Commit Graph

4247 Commits

Author SHA1 Message Date
Quincey Koziol
f0ce4df67f [svn-r17272] Description:
Finish pushing contiguous storage size from 'layout' into 'storage"
data structure.

Tested on:
	FreeBSD/32 6.3 (duty) w/debug
	Too minor to require h5committest
2009-07-29 22:27:41 -05:00
Quincey Koziol
ccc0d85878 [svn-r17269] Description:
Refactor how serialized size of layout message is computed, slightly.

Tested on:
    Mac OS X/32 10.5.7 (amazon) debug & production
    FreeBSD/32 6.3 (duty) debug
    Too minor to require h5committest
2009-07-29 21:34:54 -05:00
Quincey Koziol
e99906f517 [svn-r17268] Description:
Bring r17266 from 1.8 branch to trunk:

    Clean up various compiler warnings from IRIX64 build

Tested on:
    Mac OS X/32 (amazon) debug & production
    (yes, I know it's not an IRIX64 system :-)
    Too minor to require h5committest
2009-07-29 20:59:24 -05:00
Quincey Koziol
0836a8cf56 [svn-r17264] Description:
Refine how we store the chunk index address in the layout storage
structure.

Tested on:
	FreeBSD/32 6.3 (duty) debug
	Mac OS X/32 10.5.7 (amazon) debug & production
	Too minor to require h5committest
2009-07-29 17:45:57 -05:00
Quincey Koziol
913adc9756 [svn-r17261] Description:
Refactoring dataset layout information to segregate the constant items
from the variable items (at least from a storage standpoint).

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.7 (amazon) in debug mode
        Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-07-29 16:39:14 -05:00
Quincey Koziol
6909bc4319 [svn-r17243] Description:
Refactor how the layout message is created/written/read in the
dataset's object header.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.7 (amazon) in debug mode
        Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-07-27 17:11:29 -05:00
Quincey Koziol
405ea51bb7 [svn-r17230] Description:
Various minor tuneups noticed in working on the revise_chunks branch.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-07-23 16:46:20 -05:00
Neil Fortner
a60098af02 [svn-r17207] Fixed a small bug in the fractal heap code involving filtered fractal heaps.
Tested: jam, linew, smirom (h5committest)
2009-07-21 14:18:38 -05:00
Albert Cheng
d078d2c8e2 [svn-r17187] The ret_value is a (H5A_t *) but FAIL was used. This typo caused a warning
from Linux gcc but resulted in error by AIX xlc compiler.

Solution:
Changed FAIL to NULL.

Tested:
Just compiling in the AIX system.
2009-07-14 19:26:20 -05:00
Raymond Lu
a739b62ecc [svn-r17182] In my last round of checkin (r17177), I forgot to clean up some code. I'm checking in
the fix now.  Another minor fix - The way that H5Tset_size checks whether the datatype 
is a string wasn't correct.  I changed it to use the macro H5T_IS_STRING.

Tested on jam, smirom, and linew.
2009-07-14 12:04:04 -05:00
Raymond Lu
8a56b4d081 [svn-r17177] In H5Odtype.c, the decoding function used to mark the datatype as on disk (see bug
#1585).  I changed it to undefined and let the caller functions decide the location 
of the datatype.  For H5Tdecode, it should mark the datatype as in memory.  For other 
callers like H5Dopen or H5Aopen, they should makr it as on disk.

Tested it on jam, smirom, linew.
2009-07-13 11:26:24 -05:00
Larry Knox
818e0698cc [svn-r17159] Snapshot version 1.9 release 43 2009-07-06 10:42:14 -05:00
Quincey Koziol
1521b1dd1b [svn-r17155] Description:
Bring r17154 from 'revise_chunks' branch to trunk:

	Add fixed array data structure.  (For initial use as a chunk index)

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.7 (amazon) in debug mode
        Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-07-02 23:22:31 -05:00
Quincey Koziol
e844def040 [svn-r17152] Description:
Clean up some minor formatting and misc. errors noticed while working on
fixed array code merge.

Tested on:
    Mac OS X/32 10.5.7 (amazon)
    Too minor to require h5committest
2009-07-02 19:26:53 -05:00
Quincey Koziol
d643e648f3 [svn-r17149] Description:
Fix a couple of problems with r17148 checkin that were found by
pickier compilers.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.7 (amazon) in debug mode
        Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-07-02 18:15:06 -05:00
Quincey Koziol
c243e1e134 [svn-r17148] Description:
Refactor how chunked dataset information is computed, moving it earlier and
avoiding more recomputation.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-07-02 17:34:20 -05:00
Quincey Koziol
47e4e67e3c [svn-r17146] Description:
Bring a bunch of misc. improvements & tweaks from the revise_chunks
branch back to the trunk, so that future merges won't be so painful.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.7 (amazon) in debug mode
        Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-07-02 16:10:35 -05:00
Quincey Koziol
c4fc0074ae [svn-r17140] Description:
Migrate "new style" func enter macros (BEGIN_FUNC/THROW/CATCH/END_FUNC) into
common header files, so that other packages can use them.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-07-02 10:57:54 -05:00
Quincey Koziol
8e14272cdb [svn-r17138] Description:
Disable use of temporary file space allocation when using a parallel VFD,
until we've made changes to broadcast the new address of the metadata when it
is relocated down into 'normal' file space.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-07-01 16:01:14 -05:00
Larry Knox
e70b32f7b5 [svn-r17135] Snapshot version 1.9 release 42 2009-07-01 12:23:31 -05:00
Raymond Lu
d8c0ebd428 [svn-r17119] Bug fix #1513. Reading an empty attribute caused seg fault. The flag "initialized" in
the attribute structure wan't set correctly.  It caused some confusion in H5A_read.  This
flag was actually redundant because the library can alwasy check if the data buffer is
present.  To fix it, I removed the "initialized" flag in the attribute structure and let
H5A_read check the data buffer.

Tested on jam, smirom, and linex.
2009-06-26 14:41:32 -05:00
Neil Fortner
02dc89e00b [svn-r17108] Purpose: Fix bug in H5Z_filter_info
Description:
Previously, when H5Z_filter_info was called for a filter that was not present,
it would succeed and return the information from one position past the end of
the pipeline, possibly causing a segfault.  This affected at least
H5Pget_fitler_by_id1/2, and possibly other API functions.  Fixed to properly
return failure.

Tested: jam, linew, smirom (h5committest)
2009-06-25 13:56:00 -05:00
Quincey Koziol
e05933f245 [svn-r17062] Description:
Correct error in calculation of the new metadata accumulator size when
block to write overlaps beginning of accumulator.

Tested on:
	FreeBSD/32 6.3 (duty)
	Mac OS X/32 10.5.7 (amazon)
2009-06-16 19:59:12 -05:00
Larry Knox
312d6350fe [svn-r17047] Snapshot version 1.9 release 41 2009-06-14 10:41:49 -05:00
Quincey Koziol
c9b6d5bf85 [svn-r17045] Description:
Update the metadata accumulator code:
        - Fix a bug where we were adding 2, instead of multiplying by 2 :-/
        - Put an upper limit on the size of the metadata accumulator
        - Allocate the accumulator in powers of 2, instead of random sizes
        - Roll out the writes from the accumulator in a more I/O friendly way

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-12 10:28:34 -05:00
Quincey Koziol
cae7ea3584 [svn-r17039] Description:
Convert indirect fractal heap blocks to use deferred file space allocation
(by using the temporary file space feature), which should ease up the metadata
fragmentation that can occur when lots of objects are added to a fractal heap
(like adding many links to a group).

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
2009-06-11 18:31:44 -05:00
Quincey Koziol
b127ee77c0 [svn-r17038] Description:
Switch fractal heap direct blocks to use temporary file space, until they
are flushed, which makes allocation of space in file more efficient,
particularly for heaps with I/O filters.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-11 16:22:11 -05:00
Quincey Koziol
74af8cfa92 [svn-r17035] Description:
Add private macro for testing if an address is in the 'temporary' file
space for a file.

Tested on:
	FreeBSD/32 6.3 (duty)
	Too minor to require h5committest
2009-06-11 15:02:05 -05:00
Allen Byrne
6d01e9cde1 [svn-r17032] Added H5_DLL tag to gettimeofday signature for Windows
Tested:  XP32
2009-06-11 14:09:42 -05:00
Quincey Koziol
22243fd75d [svn-r17031] Description:
Correct latent bug in one file space allocation test which was not
getting a new file pointer when reopening a file.

	Also, add a couple more asserts to the file space allocation code in
the library to help detect this problem earlier.

Tested on:
	Linux/32 2.6 (jam) w/core VFD
2009-06-11 10:03:54 -05:00
Quincey Koziol
19e0ec17dd [svn-r17029] Description:
Adjust 'temporary' file space code to always be within the file's
address space, even when the file uses 32-bit addresses.  (It's not really
necessary to be within the file's address space, since objects with temporary
addresses can't be written to the file, but it can't really hurt and it makes
the testing easier)

Tested on:
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode and with 'make check-vfd'
2009-06-10 22:28:57 -05:00
Neil Fortner
4d2449d382 [svn-r17025] Purpose: fix bug 1593
Description:
When using H5T_copy on committed datatypes that are already open, H5T_copy would
properly use the already existing shared struct, but would still deep copy all
of the fields in that struct.  This would cause memory leaks, and in the case of
a compound containing a vlen (or reference), the change in size would cause the
size of the resulting type to be set to an incorrect value.  Changed H5T_copy to
properly avoid deep copies when using a reopened shared struct.

Tested: jam, linew, smirom (h5committest), purify on jam
2009-06-10 14:17:26 -05:00
Quincey Koziol
ab58cdcecd [svn-r17021] Description:
Make error handling for detecting overlaps between 'normal' and 'temporary'
space allocation more robust.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-09 16:11:41 -05:00
Quincey Koziol
4fa1b3c1aa [svn-r17017] Description:
Rework the "proxy address" code to be more general and implement a better
"temporary address" feature, that will allow for metadata allocations to be
deferred to when the metadata is actually flushed to the file.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-08 18:16:19 -05:00
Larry Knox
c87c334876 [svn-r17012] Snapshot version 1.9 release 40 2009-06-07 10:41:52 -05:00
Quincey Koziol
607ccd8e85 [svn-r17010] Description:
Bring file addres proxy additions from r16985 on the revise_chunks branch
back into the trunk, for use in allowing fractal heap direct blocks to defer
their allocation in the file.

Tested on:
    Mac OS X/32 10.5.7 (amazon) debug & production
    too minor to require h5committest
2009-06-04 18:36:31 -05:00
Quincey Koziol
cef36b8e7b [svn-r17006] Description:
Bring r17005 from revise_chunks branch to trunk:

	Correct error in unpinning an entry from outside the cache to correctly
unpin the entry only when it is not being used for a flush dependency relation.

Tested on:
	FreeBSD/32 6.3 (duty)
	h5committested on branch
2009-06-04 14:13:49 -05:00
Quincey Koziol
cdc1746637 [svn-r17002] Description:
Rename H5O_protect/H5O_unprotect to be H5O_pin/H5O_unpin, since that's what
that are actually doing.

    Add counter of the number of times the object header is pinned, to allow
H5O_pin/H5O_unpin to be called reentrantly.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-04 10:13:15 -05:00
Quincey Koziol
fc28993464 [svn-r16997] Description:
Change previous "depend/undepend" routine names to be "support/unsupport"
and add new "depend/undepend" routines, which make the extensible array a child
flush dependency of another piece of metadata in the file.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-02 15:14:17 -05:00
Larry Knox
126dae2440 [svn-r16995] Snapshot version 1.9 release 39 2009-06-01 13:50:44 -05:00
Quincey Koziol
fc6f3e1650 [svn-r16986] Description:
Clean up formatting & error reporting.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-27 13:08:46 -05:00
Quincey Koziol
f824891a84 [svn-r16982] Description:
Add library private routines to allow metadata cache entries to be set as
flush dependency children on extensible array entries.  This will allow chunk
proxies to be set as child flush dependencies for the extensible array, adding
another necessary layer to the flush dependency chain for SWMR access.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-26 17:42:12 -05:00
Scott Wegner
f4f4e98624 [svn-r16980] Purpose: Add new Windows def. for HDstroull, as the function isn't natively available.
Description:
Tests were failing for the HDF5 trunk on Windows because Windows does not provide the strtoul function.  However, there is a replacement, _strtoui64.  This definition has been added to the H5win32defs.h file, similar to other such replacement functions.

Tested:
VS2005 on Vista
h5committest
2009-05-22 14:37:53 -05:00
Quincey Koziol
eeae6b119a [svn-r16979] Description:
Refactor extensible array metadata lookup to abstract common code into
single, reusable routine.  Re-target existing 'set' & 'get' routines to use new
routine.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-21 18:20:05 -05:00
Quincey Koziol
865321a89d [svn-r16977] Description:
Correct error where data block was being marked dirty instead of index block.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-21 15:10:52 -05:00
Quincey Koziol
100ff923d9 [svn-r16973] Description:
Refactor chunk cache entry information to remove some [actually] unused
fields.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-21 13:46:33 -05:00
Allen Byrne
d2ef2af9b2 [svn-r16969] Updated perf_serial test to work on windows.
Tested:
Windows and h5committest
2009-05-21 10:40:03 -05:00
Raymond Lu
4a7834b7c7 [svn-r16955] Lifted the restrictions that major and minor errors must be in the same class.
Tested on jam - simple change.
2009-05-15 10:49:55 -05:00
Mike McGreevy
36431fa74c [svn-r16938] Purpose:
Modifying default cache configuration, and adding an #ifdef to allow for a 
    separate default configuration when parallel is enabled. This is being 
    modified in order to address an observed performance problem with the 
    current default configuration.

Description of Changes:

    - increasing maximum cache size from 16MB to 32MB
    - increasing maximum entry size from 10MB to 32MB
    - decreasing min_clean_fraction from 0.3 to 0.01 in serial case
    - increasing flash_multiple from 1.0 to 1.4 in serial case

Tested:
  
    jam
2009-05-12 17:07:21 -05:00
Quincey Koziol
8ae072d760 [svn-r16869] Description:
Reduce overhead for func enter/leave & error handling macros.  (Reduces
object code size by ~20% for production/~10% for debug, with gcc)

Tested on:
    Mac OS X/32 10.5.6 (amazon)
    (Too minor to require h5committest)
2009-04-28 09:41:07 -05:00