Commit Graph

82 Commits

Author SHA1 Message Date
Allen Byrne
905b1456ab HDFFV-10384 merge from develop 2018-02-19 13:22:19 -06:00
Allen Byrne
fbc86cfb3d HDFFV-10297 merge from develop
Also cleaned up some other non-merged changes
2017-10-11 15:11:39 -05:00
Allen Byrne
60ed478b75 Fix extra whitespace in usage() text 2017-09-06 09:17:18 -05:00
Allen Byrne
27b361687d HDFFV-10276 add enable-error-stack to h5diff 2017-08-31 15:27:25 -05:00
Allen Byrne
7e0114692d HDFFV-8611 preserve creation order for root group 2017-05-24 15:35:56 -05:00
Allen Byrne
a466f16851 Tools merge from develop-1.10 2017-05-17 15:53:42 -05:00
Allen Byrne
ba2cfde1fd Merge/port changes from develop back to 1.8 for tools and cmake 2017-03-29 16:44:23 -05:00
Allen Byrne
50d3fc7a61 Merge/align with trunk 2016-09-28 11:49:06 -05:00
Mohamad Chaarawi
db4acaf3ab [svn-r27165] Merge 27133 & 27158 from trunk:
- Add a new attribute function characterstic for format:
   * H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
 - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
 - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
2015-06-08 16:30:38 -05:00
Mohamad Chaarawi
ae82c43610 [svn-r26573] merge 24270 from trunk, introducing NORETURN.
tested with h5committest.
2015-03-25 09:40:34 -05:00
Quincey Koziol
e8c162613b [svn-r25497] Description:
Merge changes that correspond to the 64-bit ID changes (without the actual
switch to 64-bit IDs) to the 1.8 release branch.  (Plus a few minor cleanups
and alignments with the trunk that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:56:40 -05:00
Allen Byrne
deddc7f955 [svn-r24205] Merge HDFFV-8513/8522 from trunk (via cmake branch), h5repack UD plugins.
Also warning session fixes.

Tested: CMake local linux
2013-09-26 17:10:54 -05:00
Allen Byrne
35b22a13a8 [svn-r24106] Add help text tests for h5dump and h5repack to the linux scripts. HDFFV-8498 merge from trunk.
Tested: local linux - cmake and autotools
2013-09-06 12:28:26 -05:00
Allen Byrne
8194f34ef7 [svn-r24072] Merge trunk cmake changes to 1.8 branch.
Also add default switch blocks to h5import.
Merge h5dump any_path option from trunk.

Tested: local linux
2013-08-26 10:35:15 -05:00
Larry Knox
cdef147e6e [svn-r23965] Corrected "continuous" layout to "contiguous" in h5repack -h output and comment.
Jira issue HDFFV-8493.

No test - text only change.
2013-08-02 16:31:01 -05:00
Jonathan Kim
f6fded4394 [svn-r22281] Purpose:
Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions"

Description:
  Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims.
  Also took care of converting to contiguous and compact from the dataset.
  Test cases were added and tagged with jira#.
  Merged from HDF5 trunk r22277.

Tested:
  jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
2012-04-11 17:31:31 -05:00
Quincey Koziol
51da27de3b [svn-r22216] Description:
Bring r22180, r22181 and r22214 from trunk to 1.8 branch:

Add new "metadata block size" command line option ('-M <x>' or
    '--metadata_block_size=<x>') for h5repack.

    [With release managers blessing]

Tested on:
    Mac OSX/64 10.7.3 (amazon) w/debug)
    (h5committest upcoming)
2012-03-31 00:19:54 -05:00
Allen Byrne
6a2c50b10a [svn-r22025] Cleanup compiler warnings.
Add HD prefix to tools library based tests. Cleaned allocation/free in tests.

Tested: local linux/ h5committetest
2012-03-05 09:19:02 -05:00
Allen Byrne
68d93b7f4e [svn-r22013] HDFFV-7560:
Merge 1.8 and h5dump/tools and tests based on tools library from trunk.
Reduced warnings.

HDFFV-7949:
Remove duplicated functions in h5ls

Tested: local linux,h5committest
2012-03-02 09:21:13 -05:00
Jonathan Kim
5f9f168845 [svn-r20104] Purpose:
Change to use HDxxx macros.

Description:
    Merged from hdf5 trunk r20103.
    Originally this started for fixing incorrect pointer usage. But that got
    fixed through coverity merge. So this is mainly changing to use HDxxx 
    macros and clean up some related code.
     
Tested:
 jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
2011-02-14 17:47:19 -05:00
Quincey Koziol
525caddd9e [svn-r19254] Description:
Bring r19252 & 19253 from trunk to 1.8 branch:

   Bring Coverity changes from branch to trunk:


r19161:
Fixed the part for matching the subset info with dataset

r19189:
BZ1646: h5dump does not check number of dimensions for subsetting parameters against the dataset

Changed subset_t structure from holding hsize_t pointers to holding new subset_d pointers, which hold the original hsize_t pointer + len. this len is then checked against dataset ndims in the handle_dataset function of h5dump.

Changed all references to use new data structure.

Added tests for each subset parameter.

r19190:
Added new h5dump ddl files

Tested on:
    Mac OS X/32 10.6.4 (amazon) w/debug & production
    (h5committested on Coverity branch)
2010-08-19 16:16:28 -05:00
Allen Byrne
05d75af8b8 [svn-r18757] Enable tools lib to be built as a dll on windows. Added two get/set functions for progname and d_status.
Also add windows import/export declarations to functions.
Updated windows - H5pubconf.h for packed bits function

Tested:
   Windows, linux
2010-05-11 12:49:41 -05:00
Quincey Koziol
2ad138dbb9 [svn-r18652] Description:
Bring r18650 from trunk to 1.8 branch:

	Bring back various minor tweaks & cleanups from the revise_chunks
branch.

Tested on:
       FreeBSD/32 6.3 (duty) in debug mode
       Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
	(h5committested on trunk)
2010-04-27 17:40:05 -05:00
Quincey Koziol
fa1f33701d [svn-r18198] Description:
Trim trailing whitespace from source code files, with following command:

find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'

Tested on:
    None - eyeballed only
2010-01-29 23:33:04 -05:00
Albert Cheng
ce5e8b2a39 [svn-r17704] Bug fix: (1192)
Changed exit(1) to exit(EXIT_FAILURE) and exit(0) to exit(EXIT_SUCCESS) for
better coding.

Tested: jam.
2009-10-20 19:34:42 -05:00
Quincey Koziol
e3101ecc46 [svn-r17555] Description:
Bring r17553 from trunk to 1.8 branch:

	Bring general fixes/improvements from file_free_space branch back to
trunk.

Tested on:
       FreeBSD/32 6.3 (duty) in debug mode
       FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
       Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                               in debug mode
       Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                               w/C++ & FORTRAN, in production mode
       Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                               w/szip filter, in production mode
       Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                               in production mode
       Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
       Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
       Mac OS X/32 10.5.8 (amazon) in debug mode
       Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                               in production mode
2009-09-29 16:53:19 -05:00
Quincey Koziol
908ce6d721 [svn-r17314] Description:
Bring r17313 from trunk to 1.8 branch:
	Bring back various minor code cleanups from the file free space branch

Tested on:
       FreeBSD/32 6.3 (duty) in debug mode
       FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
       Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                               in debug mode
       Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                               w/C++ & FORTRAN, in production mode
       Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                               w/szip filter, in production mode
       Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                               in production mode
       Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
       Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
       Mac OS X/32 10.5.8 (amazon) in debug mode
       Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                               in production mode
2009-08-10 13:02:57 -05:00
Pedro Vicente Nunes
127792fc31 [svn-r16313] merge 16301
Add a mention to the usage that the default minimum size for compression is 1024 bytes


M - is an integer greater than 1, size of dataset in bytes (default is 1024)


#bgz 1426


tested: windows, linux
2009-01-14 11:36:10 -05:00
Pedro Vicente Nunes
8de58b40f5 [svn-r15985] reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code
tested: windows, linu

x
2008-10-28 20:32:42 -05:00
Pedro Vicente Nunes
299ebc0d7f [svn-r15680]
Formatted code
Tested: windows, linux
2008-09-22 16:24:22 -05:00
Pedro Vicente Nunes
d8e1072732 [svn-r15662] Cleaned compiler warnings
Bug fixes: change the options block size variable from int to hsize_t, to match the H5Pset_userblock call,
do not print print compression ratio when the requested filter is NONE


Tested: windows, linux
2008-09-19 13:57:28 -05:00
Pedro Vicente Nunes
c3113b0e3c [svn-r15642]
Add a default user block size of 1024 when none is given

add a failure condition of writing user block

Tested: windows, linux
2008-09-17 11:04:37 -05:00
Quincey Koziol
b9be045596 [svn-r15629] Description:
Remove trailing whitespace from C/C++ source files, with the following
script:

   foreach f (*.[ch] *.cpp)
       sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
   end

Tested on:
   Mac OS X/32 10.5.5 (amazon)
   No need for h5committest, just whitespace changes...
2008-09-16 11:22:16 -05:00
Pedro Vicente Nunes
13f357a946 [svn-r15558] 1) There are 2 new command line parameters for h5repack. Together they allow a call to H5Pset_alignment to be made
-t T, --threshold=T     Threshold value for H5Pset_alignment
   -a A, --alignment=A     Alignment value for H5Pset_alignment


2) bug fix
the printing of the dataset name was not done for references (verbose mode)


tested: windows, linux
2008-08-29 15:35:51 -05:00
Pedro Vicente Nunes
23cd7c534b [svn-r15533] #1184
Add a userblock to an HDF5 file during the repack.  The user gives  
give a filename and userblock size as command line parameters to  
h5repack and the contents of that file are stored in the  
userblock for the HDF5 file created by h5repack.


New flags to handle this -u and -b
Tested : windows, linux
2008-08-26 11:02:44 -05:00
Pedro Vicente Nunes
69929158f5 [svn-r15048] bug fix regarding change from -i to -d regarding number of links in indexed format
tested: windows
2008-05-20 15:35:09 -05:00
Pedro Vicente Nunes
57708e46ad [svn-r15024] backward compatibility for old -i infile -o outfile options
if these are detected this syntax is used, otherwise the one in usage is used
there was another -i option for 

-i L2, --indexed=L2     Minimum number of links in the indexed format

That was changed to -d

-d L2, --indexed=L2     Minimum number of links in the indexed format

Tested: windows, linux
2008-05-16 15:36:48 -05:00
Pedro Vicente Nunes
6f820c0a24 [svn-r14368] clean code and reshufle functions between modules, remove unused functions
tested: windows, linux
2008-01-03 15:45:18 -05:00
Pedro Vicente Nunes
129ef4da90 [svn-r14311] enhancement: change the usage example for multiple filters
to note that SHUF should be used before GZIP and that the order specified in command line is the order filters are applied

tested: windows, linux
2007-11-29 15:51:32 -05:00
Pedro Vicente Nunes
c4c9f5cf0a [svn-r14310] error check in command line: check for a wrong input of the 2 file names being the same
tested: windows, linux
2007-11-29 15:20:50 -05:00
Pedro Vicente Nunes
25d86f39b6 [svn-r14305] updated comments
tested: windows, linux
2007-11-29 10:59:17 -05:00
Pedro Vicente Nunes
eed4c76fec [svn-r14300] new feature: add a mention of multiple filters use in usage
tested: windows, linux
2007-11-28 15:58:51 -05:00
Pedro Vicente Nunes
1b645ffd91 [svn-r14299] new feature: add support for h5repack to handle several global filters
usage is to repeat the -f option

tested: windows, linux, solaris
2007-11-28 15:30:43 -05:00
Pedro Vicente Nunes
b22add1585 [svn-r14292] enhancement: clarify usage of the -s option
tested: windows, linux
2007-11-26 16:04:39 -05:00
Pedro Vicente Nunes
f13c6b5ddb [svn-r14291] enhancement: clarify the usage of the -m option
tested: windows, linux, solaris
2007-11-26 13:51:06 -05:00
Pedro Vicente Nunes
f23b5aafc1 [svn-r14269] bug fix: in the usage message example syntax
tested: linux
2007-11-19 16:25:11 -05:00
Pedro Vicente Nunes
46fab69416 [svn-r14268] enhancement: commnents and correct syntax for h5repack options
tested: linux
2007-11-19 15:13:56 -05:00
Pedro Vicente Nunes
d3507c4a5a [svn-r14264] new features: 1) new usage for h5diff " A la" h5dump format
2) new usage for h5repack and new command line parsing using the tools library parsing code

tested: windows, linux, solaris
2007-11-16 15:15:19 -05:00
Pedro Vicente Nunes
5261f00f2e [svn-r14226] new feature: add a -V version option to hrepack
tested: windows, linux
2007-10-31 12:54:39 -05:00
Peter Cao
2b89d6d73c [svn-r13975] Add --latest, -compact=<size>, ... options to use the lastest file format.
Add test for the options to the daily test.
2007-07-13 13:18:48 -05:00