including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and
I share.
Now I need to put this branch on a fork with a less confusing name than
vchoi_fork!
Description:
Moved the new H5Object::getInfo member functions to H5Location and
made them overloaded with the existing H5Location::getObjinfo. This
way is cleaner than the previous approach.
Platforms tested:
Linux/64 (jelly)
Linux/32 (jam)
Darwin (osx1010test)
Description:
- Removed two inadvertently-added Group constructors in the header file.
There was no implementation.
- Removed deprecated H5Location and H5Object constructors that take an
existing ID.
- Miscellaneous improvements in comments, including updating URLs.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
Description:
Added wrappers H5Location::exists() for H5Lexists.
Added wrapper H5Object::objVersion() to return the header version
of an HDF5 object.
Added new class LinkAccPropList to be used by H5Location::exists()
Added new exception: ObjHeaderIException for H5Object::objVersion()
Rearranged source files in Makefile.am
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Removed obsolet macros from C++ API:
H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
until further checking is done.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Jelly
Description:
Revised class brief description and other comments for up-to-date info.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Description:
Adding user's test revealed a flaw in the fix.
Moved CommonFG's functions in Group to H5Location, so that they
could be called by objects that can be used to specify a location
Also, rearranged many "#include" header files to resolve conflicts.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
trunk:
Description:
Continued rearranging the classes to model the relationship of HDF5
objects more accurately. The changes included:
- in the baseclass list of Attribute, changed "public IdComponent" to
"public H5Location", because location sometime can be specified with
attribute
- moved H5A wrappers in H5Location to H5Object because H5A functions
can't be called on attribute id
- removed the stubs Attribute::iterateAttrs and Attribute::renameAttr
- removed Attribute::getFileName and Attribute::flush, because
H5Location has them
- result of the modified partial class diagram, regarding Attribute
IdComponent
|
H5Location AbstractDs
/ \ /
H5Object Attribute
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Description:
- Added "const" to arguments that should be const
- Added "const" to const functions, i.e., function that don't change
the objects they operate on.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Description:
The following two constructors of classes: AbstractDs, IdComponent,
H5Location, and H5Object are no longer appropriate after the data member
"id" had been moved from IdComponent to the sub-classes.
The copy constructors are noop and will be generated by the compilers if
needed so they can be removed in 1.8.15 without effecting applications. The
other constructors will be removed from 1.10 release, and then from 1.8 if
their removal does not raise any problems in at least two 1.10 releases.
<Classname>(const hid_t h5_id);
<Classname>(const <Classname>& original);
Deprecation warnings are added to each of these classes.
The other classes are changed to call the default constructor instead of
one of the constructors above.
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
- Added wrappers to H5Object for H5Iget_name() to get object's name
ssize_t getObjName(char *obj_name, size_t buf_size = 0) const;
ssize_t getObjName(H5std_string& obj_name, size_t len = 0) const;
H5std_string getObjName() const;
- Added tests tobject.cpp
- Added to various cleanup_* functions in tests to remove generated files
- Added an overload H5I_type_t getHDFObjType() to get object's type
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu) with gmake
- Added a lot of documentation to classes for Reference Manual.
- Fixed some format inconsistencies
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)/PGI compilers
Description:
Changed header guards from single underscore to double underscore.
Platforms tested:
Linux/32 2.6 (jam) - very minor
Linux/64 2.6 (koala)/PGI compilers
Description:
Fixed miscellaneous inconsistencies and typos, which also took
care of the failure in Packet Table test on daily test today.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
Mac Lion (duck)
Description:
In this bug, H5File doesn't have the ability to create attribute. The
following changes will provide that functionality and several others that
were also missing:
- Added an abstract class H5Location in between IdComponent and H5Object.
- New class structure of IdComponent, H5Location, H5Object, H5File
IdComponent
|
H5Location
/ \
H5Object H5File
- Wrappers in H5Object were moved to H5Location because the related C
functions take either file, group, dataset, or named datatype ID.
- Added wrapper for H5Rget_obj_type2
- Added tests for file attributes and H5Rget_obj_type2 wrapper
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
SunOS 5.10 (linew)
Added missing wrappers for H5Rdereference.
Also, for these wrappers, improved exception handlings to report specific
overloaded functions, where failure occurs. Will do the same for more
functions later...
Platforms tested:
Linux 2.6 (kagiso)
SunOS 5.10 (linew)
FreeBSD (duty)
Description:
The class hierarchy was revised to address the problem reported in
bugzilla #1068. Classes AbstractDS and Attribute are moved out of
H5Object. Class Attribute now multiply inherits from IdComponent and
AbstractDs and class DataSet from H5Object and AbstractDs.
In addition, data member IdComponent::id was moved into subclasses:
Attribute, DataSet, DataSpace, DataType, H5File, Group, and PropList.
Platforms tested:
SunOS 5.10 (linew)
Linux 2.6 (kagiso)
FreeBSD (duty)
Make H5Aiterate() versioned and change all internal use to H5Aiterate2()
Leave some regression tests that exercise H5Aiterate1()
Fix attribute display in h5dump & h5ls to be "by name" by default
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
Description:
Changed to alias string instead of std, i.e. H5std_string instead
of H5std, because the old way wasn't working when std didn't exist.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't
able to test before.
Description:
Added alias H5_std so either the global or std namespace can be
used, depending on H5_NO_STD.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Description:
Added the following to the C++ library
+ overloaded functions:
string CommonFG::getObjnameByIdx(hsize_t idx)
H5T_order_t AtomType::getOrder()
+ wrappers for H5*close
+ wrappers for H5Arename, H5Aget_storage_size, and H5Dget_storage_size
Platforms tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol)
Description:
Added wrappers for H5Fget_name:
H5File::getFileName
H5Object::getFileName
Moved some functions from Group into the base class CommonFG for
H5File too.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Code cleanup
Description:
DataType::commit had incorrect parameter, H5Object. Changed
it to CommonFG, for H5File and Group.
The change caused additional header files needed for several
other cpp files.
Moved some functions from Group into the base class CommonFG for
H5File too.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add/Improve documentation
Description
Added doxygen documentation to H5PredType.cpp and made minor changes
to the others for either correction or clarification.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add another wrapper - incrementally check-in
Description:
Added an overloaded wrapper for H5Rcreate to H5Object.* and tests
will be added later. Also, corrected some comments.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add more C++ wrapper and documentation - incrementally check-in
Description:
Added doxygen documentation to:
H5DataSet.cpp
H5DataSpace.cpp
H5CommonFG.cpp
and a wrapper for H5Rcreate to H5Object.* with tests will be added
later.
There are more documentation need to be added to these files but
to preserve the changes, I check them in now.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Purpose:
use H5_DLLCPP to replacer __DLLCPP__ for c++ interfaces.
Description:
Solution:
Platforms tested:
linux 2.2.18smp, IRIX64, solaris 2.7, windows 2000
Purpose:
Adding support for dll
Description:
Added __DLLCPP__ to all public classes and templates.
Added #include "H5Include.h" to H5RefCounter.cpp because of the
use of DLLCPP in .h file and it needs the following chain:
H5Include.h/hdf5.h/H5public.h/H5api_adpt.h
Added #pragma warning(disable: 4251) to H5Exception.h to eliminate
this warning on private data members of type 'string.' This
occurs because 'string' is not yet instantiated at compilation
time; however, since the class is exported, the warning is
harmless.
Changed this member function's parameter to be passed as reference.
from:
void CompType::insertMember( const string name,...
to:
void CompType::insertMember( const string& name,...
Platforms tested:
Linux 6.2 (eirene)
Windows 2000
Feasibility improvement
Description:
- Some member functions in class Exception can be called without
an Exception instance exits, but because they are not static, they
cannot.
- Many exception throwings don't provide any information to callers.
Solution:
- Add 'static' to several member functions in class Exception.
- Added <class name::function name> to some exceptions thrown
in H5File.cpp and H5FcreatProp.cpp. I'm trying this for users'
comments. More information may be added later and to all
exceptions.
- Changed the comment line for emacs editor to:
// C++ informative line for the emacs editor: -*- C++ -*-
because... I'd rather not say that the code "may look like C" :-)
Platforms tested:
Linux (gcc version egcs-2.91.66)
Bug Fix
Description:
Added comments to the top of C++ files to indicate that it's a C++
file and not a C source code file. Also added a macro which makes
emacs automagically enter c++-mode. (Recommended by Frank Schimmel
fschimme@monsoon.CAPS.ou.edu)
C++ API for 1.3.x branch
Description:
The *.C and *.h files named different than those in 1.2.x.
They are in the form: 'H5' + classname, or just classname if
the classname is already prefixed with 'H5' to avoid ambiguity
in documentation context. This version has several hidden bugs
fixed and an improvement on the reference counting approach.
The classes and their inheritance structure are listed below:
---------------------------------------
H5Library
Exception
RefCounter
IdComponent
H5File
DataSpace
H5Object
Group
AbstractDs
DataSet
Attribute
DataType
PredType
EnumType
CompType
AtomType
StrType
IntType
FloatType
PropList
FileCreatPropList
FileAccPropList
DSetCreatPropList
DSetMemXferPropList
---------------------------------------
IdComponent uses RefCounter to keep track of opened objects
so proper termination of HDF5 objects can be maintained.
Each class has a .h file containing the class declaration and
a .C file containing its definition. In addition to the classes
files, the following files do not have class information:
- H5Cpp.h: header file to be included in user's application
- H5Idtemplates.h: contains a template function used by several classes
- H5Classes.h: contains forward class declarations
- H5CommonFG.*: contains common code used by classes H5File and Group
- H5Include.h: contains the hdf5.h header file and the #undef RCSID
to work around the problem: multiple defined RcsId
- H5Alltypes.h: simply serves as a container to hold the header
files of all datatypes to simplify the header file inclusion
Platforms:
Solaris (arabica) and Linux
