Commit Graph

687 Commits

Author SHA1 Message Date
Allen Byrne
7381bea1e8 OESS-65 add option to use AEC library in place of SZip 2020-05-20 09:37:19 -05:00
Quincey Koziol
d35daa45e9 Trim trailing whitespace 2020-05-20 09:37:19 -05:00
Jacob Smith
b11015c4cc Add Splitter VFD to library.
* "Simultaneous and equivalent" Read-Write and Write-Only channels for
  file I/O.
* Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for
  now, preventing issues with multi-file drivers.

Add Mirror VFD to library.

* Write-only operations over a network.
* Uses TCP/IP sockets.
* Server and auxiliary server-shutdown programs provided in a new directory,
  `utils/mirror_vfd`.
* Automated testing via loopback ("remote" of localhost).
2020-05-20 09:34:20 -05:00
Larry Knox
01a152f83c Add \d to list of characters allowed after '-' in versions. 2020-05-20 09:31:58 -05:00
Quincey Koziol
7b119d614b Revise API for H5get_alloc_stats() to take a struct instead of separate values. 2020-05-20 09:31:56 -05:00
Allen Byrne
95c4222cd1 Update examples and fix old version references. 2020-05-20 09:31:55 -05:00
David Young
4cd3dc95d9 Filter all of the new _USED / _UNUSED type modifiers. 2020-05-20 09:31:55 -05:00
Larry Knox
812e7eda57 Max Library "index" should be 7. 2020-05-20 09:31:51 -05:00
Larry Knox
ec3847712c Remove duplicate lines noted on forum by Eric Bavier 2020-05-20 09:31:50 -05:00
Larry Knox
7bbca40652 Add v111 version for H5O functions to enable version1 default for HDF5
1.8-1.10 and version 3 default for HDF5 1.12.  Version 2 functions are
available (deprecated) but will not be the default for any version.
2020-05-20 09:31:50 -05:00
Dana Robinson
3e6a192e9c Squashed commit of the token_refactoring branch: 2020-05-20 09:31:50 -05:00
kmu
1d46e82317 fix intel compile warnings 2020-05-20 09:20:25 -05:00
kmu
fb8f955a73 Revert "fix warnings from Intel compiler"
This reverts commit 8b9338ab57.
2020-05-20 09:20:24 -05:00
kmu
f2028c7568 Revert "using a different MACRO"
This reverts commit fc61b7a9f3.
2020-05-20 09:20:24 -05:00
kmu
9a3a13cacb using a different MACRO 2020-05-20 09:20:23 -05:00
kmu
6725222332 fix warnings from Intel compiler 2020-05-20 09:20:23 -05:00
Quincey Koziol
996e12e796 Refactor all the 'H5VL_*_optional' callbacks to move the type of operation out
of the va_list, so it's at least possible for another connector to know what
the operation is and decide whether to implement it or not.

Added a new VOL sub-class called "introspect" where callbacks that report
information about the connector or container can be placed.  Added an
'opt_query' callback to this sub-class, for a connector to report back
to the library whether a particular optional callback operation is supported.
Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t
of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or
the terminal connector, H5VL_GET_CONN_LVL_TERM).

Moved the "post open" operation from a file 'specific' operation to a file
'optional' operation, now that it's possible to detect (with the 'opt_query'
introspection callback) whether a VOL connector implements an optional
operation, without just returning an error.

Added new internal VOL helper routines: H5VL_object_is_native, to determine
if an object is in (or is a) native file, and H5VL_file_is_same, to determine
if two objects are in (or are) the same terminal VOL connector's container.
(And moved the special handling for FILE_IS_EQUAL operation out of internal VOL
callback routine into H5VL_file_is_same)

Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better
with other 'get' operations in API.

Fixed several issues with pass-through connectors, which are now passing the
'make check-passthrough-vol' tests again.

A bunch of warning and style cleanups as well.
2020-05-20 09:20:21 -05:00
David Young
5ad9d9277e Make this script work on hosts where PERL is not installed at
/usr/bin/perl.
2020-05-20 09:20:21 -05:00
David Young
c8f533cfc3 Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,
including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and
I share.

Now I need to put this branch on a fork with a less confusing name than
vchoi_fork!
2019-12-09 10:30:58 -06:00
David Young
82f647534c Make some NetBSD compatibility patches. 2019-10-03 17:30:46 -05:00
Vailin Choi
06fa8a9455 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into feature/vfd_swmr
Conflicts:
	src/H5AC.c
	src/H5F.c
	src/H5Pfapl.c
Resolve conflicts for H5AC.c, H5F.c and H5Pfapl.c
2018-09-26 12:45:07 -05:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Vailin Choi
d926ddb1a2 Merge pull request #10 in ~VCHOI/my_hdf5_fork from develop to feature/vfd_swmr
* commit 'c834d9f99d45e5b9752e8525fe8761ea5592bf2c': (41 commits)
  HDFFV-10568 fix hdf5_java library dependency
  Remove another extra path var
  Move muti-config dir setting to root process
  Fix one more intermediate location
  Use different variable
  Cleanup and add intermediate dir for java
  Java must use shared libs to allow dlopen calls
  Correct names
  Call new function
  Correct default API version for develop to 112.
  Fix typo
  HD prefix and whitespace
  Update RELEASE.txt with suggested changes
  Update MANIFEST file for new t_coll_md_read.c file
  Remove now-unused local variable
  Add fix for HDFFV-10501
  Revert testfile FILE change
  change FILE path
  Add testfiles to data copy
  Same changes needed for examples as test
  ...
2018-09-03 22:36:44 -05:00
Allen Byrne
12adeedf6b HDFFV-10552 fix version script (missed when 1.11 created) 2018-08-16 15:06:29 -05:00
Vailin Choi
45be06a387 Preliminary checkins for implementation done so far:
1) Public routines: H5Pget/set_vfd_swmr_config
2) Public routine: H5Fvfd_swmr_end_tick
3) Initialization when opening a file with VFD SWMR writer
4) Tests in test/vfd_swmr.c for VFD SWMR
5) Fix a bug in src/H5Fint.c: when error is encountered after the root group is created
Note the following:
--This is WORK IN PROGRESS and will subject to change as implementation goes.
--There is test failure form enc_dec_plist.c: I will fix this when changes to the property list are settled.
--The branch is updated with the latest from develop as of 8/14/2018
2018-08-14 13:21:00 -05:00
Larry Knox
ac5871c39c Update HDF5 examples to correct version. 2018-07-24 16:10:33 -05:00
Larry Knox
208ff1410d Correct a few typos. 2018-07-24 15:48:29 -05:00
Larry Knox
076ae17a5d Update bine/release to create batch scripts and build-unix-sh, and to
put files in a subdirectory.
2018-07-24 14:47:07 -05:00
Larry Knox
77fa93e07b Add cmakehdf5 command line option to turn on shell script testing.
Option is on by default but can be disabled with --disable-shell-testing.
2018-07-19 09:49:32 -05:00
Allen Byrne
47780cb4e0 TRILAB-31 Working locally 2018-07-16 13:01:53 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
lrknox
725d6cbbf0 Clear RELEASE.txt after HDF5 1.10.2 release
Bring README.txt and INSTALL* updates from hdf5_1_10_2 branch to
hdf5_1_10 branch.
Bring bin/release changes to hdff5_1_10 branch.
2018-04-03 11:54:18 -05:00
M. Scot Breitenfeld
59e7c7703e Merge branch 'develop' into hdf5_1_10 2017-10-26 10:13:33 -05:00
Larry Knox
34a31e7e13 Merge pull request #686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'fded10f0815f593301ac88d08d05343c8077746a':
  Add note to bin/release script with hint for situations where files generated by autogen.sh are missing, causing chkmanifest to fail.
2017-10-05 16:47:46 -05:00
lrknox
fded10f081 Add note to bin/release script with hint for situations where files
generated by autogen.sh are missing, causing chkmanifest to fail.
2017-09-26 09:37:43 -05:00
Allen Byrne
c1afe1c21a Correct VS2017 references 2017-09-05 13:29:59 -05:00
Allen Byrne
073f524247 HDFFV-10284 Add VS2017 support 2017-08-31 13:37:50 -05:00
Dana Robinson
d4234d0a98 Major rework of H5PL package code before bringing VOL changes
over.

Brings coding standards in line with the rest of the library,
enforces better software engineering principles, and makes
everything more maintainable.
2017-07-14 09:18:33 -07:00
Dana Robinson
14bc39bcb5 Updated bin/trace to emit errors and reordered autogen.sh processing
so that script failures leave the library in a non-compilable state,
making it harder to ignore errors.
2017-04-25 17:10:11 -04:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Dana Robinson
b1a5ba4053 Updated bin/trace to emit errors and reordered autogen.sh processing
so that script failures leave the library in a non-compilable state,
making it harder to ignore errors.
2017-04-25 02:09:55 -04:00
lrknox
49cded79ce Add new files in release_docs to MANIFEST.
Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running
autogen.sh.

Conflicts:
	README.txt
	c++/src/Makefile.in
	fortran/src/Makefile.in
	hl/c++/src/Makefile.in
	hl/fortran/src/Makefile.in
	hl/src/Makefile.in
	java/src/jni/Makefile.in
	release_docs/RELEASE.txt
	src/Makefile.in
2017-04-15 08:17:10 -05:00
lrknox
25ec07450a Change copyright headers to replace url referring to file to be removed
and replace it with new url for COPYING file.

Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
2017-04-14 11:54:16 -05:00
lrknox
00a19eebf0 Update RELEASE.txt Remove "currently under development" from h5vers for
HDF5Config.cmake that causes cmake not to find HDF5.
2017-03-24 13:42:30 -05:00
lrknox
972344e231 Merge bin/h5vers changes from develop.
Pull version from configure for version test in h5repack_plugin.sh.in
Update version to 1.10.2-snap0 for hdf5_1_10 branch.
2017-03-23 20:03:27 -05:00
lrknox
fa5ca5272d Remove extra space added by h5vers to version string in H5.java, which
then failed to match the pattern after the first run.
2017-03-21 11:40:11 -05:00
lrknox
7e7121fec6 Remove incorrect " marks added to java files by bin/h5vers.
Pull version from configure for version test in h5repack_plugin.sh.in
2017-03-21 10:57:40 -05:00
lrknox
cd8ec2cc44 Extend h5vers to update version strings in java files and h5repack
version test expected output file.

Update version on develop branch to 1.11.0.

 Please enter the commit message for your changes. Lines starting
2017-03-20 17:14:16 -05:00
lrknox
98567db192 output_filter.sh:
Comment added to address HDFFV-8270.  The sample ontput in the
        file's comments are not up-to-date with the scripts in the file
        that remove output unique to certain systems when running test
        scripts.  This output doesn't match expected output files for
        the tests, causing them to fail.  Ther output_filter.sh file
        removes such output.  Currently we don't have access to these
        systems to update the comments.

testflushrefresh.sh.in:
        flushrefresh and other SWMR tests have been failing
        occasionally but regularly since bringing them to the develop
        branch.  The logs and debugging point to unexpected deletion of
        signal files as the point of failure, and John Mainzer suggests
        that two such tests running simultaneously in the same directory
        may lead to the operating system deleting the other test's
        signal file. Running the flushrefresh test in its own directory
        seems to solve the problem.
2017-03-15 12:49:19 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00