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124 Commits

Author SHA1 Message Date
Dana Robinson
f86004dbde Normalization with develop (#704) 2021-05-28 08:48:51 -07:00
Dana Robinson
2ddf5fbd92 Much normalization with develop (#701) 
* Brings CMake updates from develop

* Brings reduction in pedantic casts from develop

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Formatted source

* Bring over some VOL registration changes

* VOL cleanup

* H5VL_request_status_t substitutions

* H5F.c cleanup

* Minor API tweaks from develop

* Moves H5G package init/teardown to H5Gint.c

* H5G cleanup

* H5M cleanup

* H5SM cleanup

* H5T cleanup

* H5R cleanup

* H5Lpublic.h cleanup

* H5L cleanup

* H5O cleanup

* H5A, H5CS, and H5AC cleanup

* Moved H5A init/teardown code to H5Aint.c

* Moves H5D I/O functions to H5D.c

* H5D cleanup

* Misc minor cleanup

* H5P close cleanup

* H5Tpublic.h cleanup

* Fixes err_compat test

* H5PLpublic.h cleanup

* Updates H5Ppublic.h

* H5Fpublic.h updates

* H5A.c cleanup

* Brings over H5Aexists and related changes

* Brings CMake shell testing changes from develop

* Close callback changes

* H5R and H5Tcommit normalization

* err_compat test works now

* H5O tweaks

* Updates VOL registration code

* Brings over H5VL_create_object

* H5Tconv.c reformatting

* H5T.c tweaks

* Brings datatype and reference updates from develop

* Brings VOL plugin loading changes from develop

* Brings event sets from develop

* Brings async functions over

* Tools changes

* Brings over many tools changes from develop

* Brings VOL flags from develop

* Fixes h5dump double/float tests

* Updates h5repack tests

* Brings h5diff test changes from develop

* Last h5dump changes

* Brings test changes from develop

* Committing clang-format changes

* Tidied h5_testing()

* Brings chunk iteration code + misc from develop

* Updates vds test

* Enables external link parallel test

* Brings updated property lists from develop

* H5G changes from develop

* H5MF cleanup

* Brings vfd_swmr test back into CMake

* Updates threadsafe test

* Updates plist test

* Brings recent changes from develop

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
 2021-05-28 07:10:51 -07:00
Dana Robinson
ce39d7501c Brings H5CX_pop() changes from develop 2021-04-07 17:35:30 -07:00
Dana Robinson
67cfa2396c Updates license url and history docs 2021-03-24 18:29:11 -07:00
Dana Robinson
feb20aac30 Formats the source and updates the gcc warning pragmas 2021-03-24 17:39:37 -07:00
David Young
9eb33fe812 Reduce diffs with develop, where H5C_move_entry takes an H5C_t * 
argument, first, not `H5F_t *`.
 2020-05-20 09:37:22 -05:00
Dana Robinson
3290803120 Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings."" 
This reverts commit 6486e06545.
 2020-05-20 09:31:52 -05:00
Dana Robinson
36647e79b9 Revert "Moved -Wunsuffixed-float-constants to the developer warnings." 
This reverts commit 12bc75c617.
 2020-05-20 09:31:52 -05:00
Dana Robinson
40c5e67e41 Moved -Wunsuffixed-float-constants to the developer warnings. 2020-05-20 09:31:52 -05:00
Allen Byrne
def01d7676 Adjust cache.c only variables. 2020-05-20 09:20:21 -05:00
Allen Byrne
2cff38d38e Fix include to correct memory calls - big-endian issue. 2020-05-20 09:20:21 -05:00
Allen Byrne
5b50f47f31 HDFFV-10979 cleanup globals 2020-05-20 09:20:20 -05:00
Allen Byrne
59d5321a33 HDFFV-10979 fix global name clash 2020-05-20 09:20:20 -05:00
David Young
77144641df Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2020-05-20 09:20:17 -05:00
David Young
2b863a8119 Change some GCC warnings to errors. Fix code to quiet some warnings. 2020-05-20 09:17:27 -05:00
David Young
3cb259c5a2 So that I can use PASSED(); anywhere a statement can go, #define PASSED() with 
a do-while wrapper.
 2020-02-28 16:44:16 -06:00
David Young
c8f533cfc3 Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1, 
including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and
I share.

Now I need to put this branch on a fork with a less confusing name than
vchoi_fork!
 2019-12-09 10:30:58 -06:00
mainzer
4f8917f908 Interim checkin to allow Vailin to address assertion failure in 
the memory manager -- details shown below.

Note that there are other issues as well -- this is not a
working version.

[mainzer@jelly test]$ ./vfd_swmr
Testing Configure VFD SWMR with fapl                                   PASSED
Testing VFD SWMR configuration for the file and fapl                   PASSED
Testing H5Fvfd_swmr_end_tick() for VFD SWMR                            PASSED
Testing Create/Open/Flush an HDF5 file for VFD SWMR                    PASSED
Testing Verify the metadata file for VFD SWMR writer                  vfd_swmr: H5MVsection.c:233: H5MV__sect_can_merge: Assertion `((sect1->sect_info.addr)!=((haddr_t)(long)(-1)) && (sect2->sect_info.addr)!=((haddr_t)(long)(-1)) && (sect1->sect_info.addr)<(sect2->sect_info.addr))' failed.
Abort (core dumped)
[mainzer@jelly test]$
 2019-01-03 13:50:53 -06:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Quincey Koziol
744b6b282f Better segregate clean & dirty LRU lists so that they are only defined when 
the H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS macro is defined.
 2017-09-30 09:50:58 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
 2017-04-25 16:05:36 -05:00
mainzer
4651eb738d Express test mods to test/cache.c 
Modified test/cache.c to skip the smoke checks with paged aggregation
for all express test levels other than 0

Change to src/H5PL.c seems to be the result of autogen.sh.  As it
seems to be correct, I am checking it in.

Tested serial and parallel (debug only) on jelly.
 2017-04-14 23:44:23 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Quincey Koziol
0b78740ff4 Merge in reentrency changes to "make space in cache" from page_buffering branch. 2017-03-13 07:45:42 -07:00
Quincey Koziol
c4a36e0bb3 Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from 
a cache image.
 2017-03-12 01:57:19 -08:00
Quincey Koziol
5df52404bc Misc. small cleanups to sync against incoming page buffering changes. 2017-03-02 06:24:46 -08:00
Quincey Koziol
4b5e05c084 Fix some more signed -> unsigned value issues with cache data structures, also 
misc. style cleanups.  All to align w/incoming page_buffering changes.
 2017-02-22 23:21:41 -08:00
Quincey Koziol
101fa7af8e Cleanups and normalizations against incoming page_buffering changes. 2017-02-19 18:28:52 -08:00
Allen Byrne
2b383bb8ff HDFFV-10124 Using cache_common.h contains other include files 2017-02-02 11:55:01 -06:00
Quincey Koziol
1949d5756d Cache image feature and testing 2017-01-28 23:19:37 -08:00
Quincey Koziol
5a776edb81 Bring change to use array of metadata cache entry classes for H5C_create 
instead of array of class names from cache image branch.
 2017-01-27 23:18:47 -08:00
Quincey Koziol
349f41d974 Switch list lengths to unsigned integers (to align better w/cache image merge) 2017-01-27 20:35:14 -08:00
Quincey Koziol
7568dcaf15 Add "image up to date" flag / parameter to metadata cache entry status calls. 2017-01-06 07:51:40 -08:00
Quincey Koziol
afd7e5b476 Bring file shutdown code from cache image branch 2017-01-04 21:36:14 -08:00
Quincey Koziol
0610c41c75 Bring support for doubly-linked list of all entries in cache from incoming 
cache image branch.
 2016-12-30 02:22:48 -08:00
Quincey Koziol
da2f1610d1 More normalizations against incoming cache image branch. 2016-12-29 02:40:26 -08:00
Quincey Koziol
feb9d1f676 Bring over changes from revise_chunks that cleanup recent SWMR changes from 
code review feedback.
 2016-12-11 00:28:05 -08:00
Quincey Koziol
3b0c2b24da Bring over support for retrying metadata cache entry loads, along with all the 
supporting metadata cache callback changes, etc.
 2016-11-20 04:24:57 -08:00
Quincey Koziol
bb6cb6adb0 Code style and warning cleanups, from revise_chunks branch. 2016-11-06 12:08:19 -08:00
Quincey Koziol
b8f809981b [svn-r30112] Description: 
Move updated flush dependency code in metadata cache from revise_chunks
branch to trunk.  Also many of the cleanups from r30111 in the revise_chunks
branch.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-28 16:39:09 -05:00
Quincey Koziol
7a9e13afdb [svn-r30068] Description: 
Bring metadata cache corking to trunk.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-13 12:49:39 -05:00
Dana Robinson
fcaf9c483a [svn-r30002] Fixed some minor warnings in H5AC.c and H5C.c, cleaned up warnings 
in the cache tests, and made some huge static arrays dynamic
in the cache tests.

Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1
           Autotools serial
 2016-06-01 12:02:30 -05:00
Allen Byrne
ca8465513d [svn-r29882] Convert cache source files to library compatible by CMake and Windows 2016-05-04 11:29:52 -05:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations. 
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
 2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
48bebcc39e [svn-r29057] added dxpl type checking when debug mode is enabled (H5_DEBUG_BUILD) 
tested on bb-8 with Serial and Parallel, debug and production builds.
 2016-02-07 10:37:33 -05:00
Quincey Koziol
ad37464819 [svn-r27296] Description: 
Correct error with braces around macro (in production builds), also clean
up a few warnings.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial, parallel & production
    Linux/32 2.6 (jam) w/serial & parallel
 2015-06-29 15:22:30 -05:00
Quincey Koziol
89115b11b0 [svn-r27294] Description: 
Clean up parameters to H5C__flush_single_entry: accept cache entry instead
of address, and make new flag for deleting entry from skiplist on destroy
instead of a separate parameter to the routine.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-29 10:19:34 -05:00
Quincey Koziol
8e94745298 [svn-r27293] Description: 
Split parallel metadata cache code into separate source code modules.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    (too minor for h5committest)
 2015-06-27 11:45:21 -05:00
Quincey Koziol
f30ab55f41 [svn-r27237] Description: 
Merge v3 metadata cache changes to trunk.  Yay! :-)

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (daily tested on branch)
 2015-06-17 19:58:49 -05:00
Quincey Koziol
adbb64c6cd [svn-r27204] Description: 
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-15 11:07:38 -05:00