Commit Graph

52 Commits

Author SHA1 Message Date
Scot Breitenfeld
f859cb732b Fixed Spelling Errors (#1166)
* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-07 08:27:29 -06:00
Allen Byrne
74f1590d47 Only test h5diff_830 in serial (#858) 2021-07-27 13:59:05 -05:00
Allen Byrne
47c7bd9834 Rework Fortran configure to allow multiple CMake reruns (#721)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

* Fix perl and doxygen CMake code

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

* Add stamp files to BYPRODUCTS

* Only one copy of file exists

* Fix custom cmmand depends targets

* Fix fortran custom command DEPENDS

* Add LD_LIBRARY_PATH to tests

* Add custom target for DEPENDS

* Add h5detect conditionaly to generated target DEPENDS

* Correct DEPENDS targets

* Parallel builds need the mpi compiler for pkgconfig scripts.

* install only if MPI build

* Fortran target depends

* Remove incorrect source attribute

* doxygen adjustments

* doxygen build updates

* Correct version

* Correct function version - function has been merged to 1.12

* Correct version string for map functions

* Cleanup warnings for tools debug builds

* TRILAB-227 - fix indexing for h5diff selections

* Correct location of pos to index function call

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES because of AppleClang

* if blocks needed for build modes

* Update list of DT platforms

* VS2019 correctly displays float values

* revert VS2019 change

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

* Java reference functions updated

enabled fortran in cmake gcc action yaml file
java reference test changed to correctly test refs
jni reference functions that create ids changed to use jni id logging

* Correct BYPRODUCTS argument

* Correct more genereated files BYPRODUCTS

* BYPRODUCTS must have unique locations

* Fix typo

* Fix fortran configure checks

* Rework H5_PAC_C_MAX_REAL_PRECISION setting logic

* Add note about fortran configure change

* Adds a quick for for some egregious chunk_info badness (#722)

* Fixes issue with ccmake that prevents building Fortran (#723)

ccmake runs iteratively, and the check_fortran_source_runs
macros were clobbering a single output file that did not
get updated on further configure iterations

* Fix conflicts with merge

* Move MAX_PRECISION back to HDF5UseFortran.cmake

* Use STREQUAL to test macro argument

* Move C language test to ConfigureChecks from HDF5UseFortran

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
2021-06-07 17:59:47 -05:00
Allen Byrne
6955329054 h5diff subset indexing (#628)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

* Fix perl and doxygen CMake code

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

* Add stamp files to BYPRODUCTS

* Only one copy of file exists

* Fix custom cmmand depends targets

* Fix fortran custom command DEPENDS

* Add LD_LIBRARY_PATH to tests

* Add custom target for DEPENDS

* Add h5detect conditionaly to generated target DEPENDS

* Correct DEPENDS targets

* Parallel builds need the mpi compiler for pkgconfig scripts.

* install only if MPI build

* Fortran target depends

* Remove incorrect source attribute

* doxygen adjustments

* doxygen build updates

* Correct version

* Correct function version - function has been merged to 1.12

* Correct version string for map functions

* Cleanup warnings for tools debug builds

* TRILAB-227 - fix indexing for h5diff selections

* Correct location of pos to index function call

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-05-07 11:43:12 -05:00
Larry Knox
2ea165efd0 Update license url part2 (#333)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.
2021-02-17 08:52:36 -06:00
Allen Byrne
3f15fb3522 Fix jni with %Lg instead of %Lf
Fix warnings due to improper formed define tag in h5diff
2020-09-29 11:42:17 -05:00
Allen Byrne
57c4aeb0cc TRILABS-277 Use JIRA number as #ifdef 2020-08-15 17:25:22 -05:00
Allen Byrne
fc57490e02 Mingw copy disabled 2020-07-31 07:50:11 -05:00
Allen Byrne
1f7fa50137 Correct h5diff filenames 2020-07-29 08:24:30 -05:00
Allen Byrne
bac0fc6309 Tools refactor
Move error_stack setup to tools library
Add structure for h5dump properties
Eliminate duplicated h5diff functions
Use properties structure in place of argument lists.
2020-07-15 11:20:16 -05:00
Allen Byrne
527aaa32b2 HDFFV-11011 correct issues with target file extension 2020-01-28 13:14:59 -06:00
Allen Byrne
7022a3380c HDFFV-11001 need to qualify all by parallel or serial types 2020-01-15 12:28:53 -06:00
Allen Byrne
a0ae5e9b89 HDFFV-11001 Add fine control over testing 2020-01-15 11:38:06 -06:00
Allen Byrne
9ff8fe6477 h5diff test script files 2019-12-21 14:45:12 -06:00
Allen Byrne
628c63f125 HDFFV-10980 - h5diff uses new ref APIs 2019-12-19 16:29:43 -06:00
Allen Byrne
9affb7f12e Fix MPI test depends 2019-10-23 14:49:05 -05:00
Allen Byrne
6a932198aa HDFFV-10529 Update CMake tests to use test fixtures 2019-07-23 16:24:56 -05:00
Allen Byrne
95d3b41af0 HDFFV-10845 separate test used by copy windows files 2019-07-17 11:58:04 -05:00
Allen Byrne
0eb050d481 HDFFV-10845 mingw needs special windows reference files 2019-07-17 11:58:04 -05:00
Allen Byrne
f724e86727 HDFFV-10845 use of TARGETFILE disables auto emulator 2019-07-17 11:58:04 -05:00
Allen Byrne
468b130be3 Add lib dir for testing plugins 2019-06-21 13:46:46 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00
Allen Byrne
6f71b2cdcf Refactor mpi test names 2019-02-11 12:42:46 -06:00
Allen Byrne
d98faf5703 Rename parallel tests to start with PAR_ 2019-02-11 11:09:43 -06:00
Allen Byrne
eb1b3f42c4 HDFFV=10632 test cleanup 2018-12-06 07:54:19 -06:00
Allen Byrne
e3e24a2989 HDFFV-10632 - split stderr and stdout in cmake 2018-12-03 09:35:59 -06:00
Allen Byrne
7d13e53294 HDFFV-9745 Create test and files to verify fixes 2018-01-04 10:09:03 -06:00
Allen Byrne
0ec1e5eeee HDFFV-8745 remove files from test scripts 2018-01-02 15:08:43 -06:00
Allen Byrne
5f4676f3c8 HDFFV-8745 - fix implementation of 8625 2018-01-02 14:39:45 -06:00
Allen Byrne
f8fd6d0b41 Correct usage of MPI vars 2017-11-01 13:41:44 -05:00
Allen Byrne
c577a5e995 HDFFV-10297 update calls to H5Zfilter_avail 2017-10-09 17:00:15 -05:00
Allen Byrne
467f30c410 Cleanup cmake clean macros 2017-10-03 14:14:53 -05:00
Allen Byrne
4f9e47650a Fix STREQUAL if commands. 2017-10-02 12:39:15 -05:00
Allen Byrne
e271abfb36 HDFFV-10276 Add filter mask for standard err 2017-09-06 10:18:18 -05:00
Allen Byrne
89f65fc97e HDFFV-9774 Add enable-error-stack argument to h5diff 2017-08-31 15:58:37 -05:00
Allen Byrne
04d6a3ec3c if PARALLEL copy seconf file to PAR folder 2017-07-27 11:18:52 -05:00
Allen Byrne
e790a0b42d HDFFV-10246 Add check for string not null before use 2017-07-25 15:15:20 -05:00
Allen Byrne
23d9fe2649 HDFFV-9055 add test files 2017-05-17 10:06:17 -05:00
Allen Byrne
4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Allen Byrne
56c3ec9820 HDFFV-10128 add test to check null term
Test is another dataset
2017-05-15 12:33:58 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Allen Byrne
cceddc6b4f Correct result code for strings test 2017-03-03 15:26:06 -06:00
Allen Byrne
9e75847d67 HDFFV-10128 fix string compare and add tests 2017-03-03 14:47:59 -06:00
Allen Byrne
2562ec3a4b Update CMake files and formatting 2017-03-01 14:47:53 -06:00
Allen Byrne
08b5edca0b Fix parallel h5diff test comapare 2017-02-14 14:59:57 -06:00
Allen Byrne
5e87ada674 Set depends test dependency for parallel h5diff 2017-02-14 13:51:34 -06:00
Allen Byrne
406db26f51 HDFFV-9994 add UD tests for tools 2017-01-17 13:46:11 -06:00
Allen Byrne
244faaa0d0 HDFFV-10094: upgrade cmake command conventions
Also converted tests to use macros
2017-01-11 14:02:34 -06:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00