Commit Graph

356 Commits

Author SHA1 Message Date
David Young
dc97b9a165 Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmr 2020-08-04 10:22:47 -05:00
Allen Byrne
bac0fc6309 Tools refactor
Move error_stack setup to tools library
Add structure for h5dump properties
Eliminate duplicated h5diff functions
Use properties structure in place of argument lists.
2020-07-15 11:20:16 -05:00
Binh-Minh Ribler
c12da4884f Fix HDFFV-10591
Description:
    h52gif produced a segfault when a buffer overflow occurred because
    the data size was corrupted and became very large.  This commit added
    a check on the data size against the buffer size to prevent the segfault.
    It also added error reporting to h52gif to display an error message
    instead of silently exiting when the failure occurred.
Platforms tested:
    Linux/64 (jelly)
    SunOS 5.11 (emu)
2020-06-19 10:53:32 -05:00
Quincey Koziol
d35daa45e9 Trim trailing whitespace 2020-05-20 09:37:19 -05:00
Allen Byrne
f5dc2a2f8d TRILAB-192 add c++ and fortran warnings build systems one file 2020-05-20 09:31:57 -05:00
Jordan Henderson
254388494a Update Tools library to be better compatible with VOL connectors
Modify h5repack to integrate with VOL connectors

Update tools library to accomodate VOL connectors

Update logic in h5tools_fopen for VOL connectors

Add command-line options to h5repack for specifying in/out VOL
connectors

Implement h5tools_set_vol_fapl

Fix library shutdown issue

Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme

Avoid H5Ocopy in h5repack when using different VOL connectors

Update h5tools_test_utils.c for ROS3 and HDFS integration
2020-05-20 09:31:56 -05:00
Allen Byrne
60a4987f97 TRILAB-142 Change minimum CMake version to 3.12 2020-05-20 09:31:55 -05:00
Dana Robinson
dea87efdf9 Cleaned up remaining warnings in high-level library. 2020-05-20 09:31:54 -05:00
Allen Byrne
b44b3d136d HDFFV-11011 correct issues with target file extension 2020-05-20 09:31:53 -05:00
Allen Byrne
6b106b2cab HDFFV-11001 need to qualify all by parallel or serial types 2020-05-20 09:20:26 -05:00
Allen Byrne
6682c717e2 HDFFV-11001 Add fine control over testing 2020-05-20 09:20:26 -05:00
kmu
271bce5b10 remove unnecessary check macro 2020-05-20 09:20:25 -05:00
kmu
1d46e82317 fix intel compile warnings 2020-05-20 09:20:25 -05:00
kmu
fb8f955a73 Revert "fix warnings from Intel compiler"
This reverts commit 8b9338ab57.
2020-05-20 09:20:24 -05:00
kmu
9d8fb46a2c Revert "fix issues from previous PR comments"
This reverts commit d242a900f4.
2020-05-20 09:20:24 -05:00
kmu
f2028c7568 Revert "using a different MACRO"
This reverts commit fc61b7a9f3.
2020-05-20 09:20:24 -05:00
kmu
9a3a13cacb using a different MACRO 2020-05-20 09:20:23 -05:00
kmu
bb53a566e8 fix issues from previous PR comments 2020-05-20 09:20:23 -05:00
kmu
6725222332 fix warnings from Intel compiler 2020-05-20 09:20:23 -05:00
David Young
2914c7baf8 In portable shell scripts (using #!/bin/sh) we have to use single square
brackets, [ ], instead of the bash-ism double square brackets, [[ ]].
2020-05-20 09:20:21 -05:00
Allen Byrne
85bf828d0c Correct assignment 2020-05-20 09:20:20 -05:00
Allen Byrne
64da9d289b Fix java include, h5watch and remove clang tool. 2020-05-20 09:20:20 -05:00
Allen Byrne
1401be4805 HDFFV-10974 Change defines to eliminate Windows conflict 2020-05-20 09:20:20 -05:00
Allen Byrne
82751ecbb9 Fix windows 10 compile error 2020-05-20 09:20:20 -05:00
Allen Byrne
1e7387a5f8 HDFFV-10876 Update h5dump and h5ls for new ref api. 2020-05-20 09:17:26 -05:00
Quincey Koziol
9e5dbf6906 Trim trailing whitespace 2020-04-20 18:12:00 -05:00
Allen Byrne
57f5d00a43 TRILAB-192 add c++ and fortran warnings build systems one file 2020-04-05 10:50:08 -05:00
Jordan Henderson
fa087c3919 Update Tools library to be better compatible with VOL connectors
Modify h5repack to integrate with VOL connectors

Update tools library to accomodate VOL connectors

Update logic in h5tools_fopen for VOL connectors

Add command-line options to h5repack for specifying in/out VOL
connectors

Implement h5tools_set_vol_fapl

Fix library shutdown issue

Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme

Avoid H5Ocopy in h5repack when using different VOL connectors

Update h5tools_test_utils.c for ROS3 and HDFS integration
2020-03-17 14:25:36 -05:00
Allen Byrne
666205a55f TRILAB-142 Change minimum CMake version to 3.12 2020-02-21 16:16:06 -06:00
Dana Robinson
d1f2eff231 Merge pull request #2328 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop
* commit 'a67c238feef1487814b02132bfd7961f22d9d6eb':
  Cleaned up remaining warnings in high-level library.
2020-01-30 10:43:40 -06:00
Dana Robinson
a67c238fee Cleaned up remaining warnings in high-level library. 2020-01-29 18:09:29 -08:00
Allen Byrne
527aaa32b2 HDFFV-11011 correct issues with target file extension 2020-01-28 13:14:59 -06:00
Allen Byrne
7022a3380c HDFFV-11001 need to qualify all by parallel or serial types 2020-01-15 12:28:53 -06:00
Allen Byrne
a0ae5e9b89 HDFFV-11001 Add fine control over testing 2020-01-15 11:38:06 -06:00
Kimmy Mu
127f07d64a Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop
* commit '0a2bb11b248df6841daabca3970df5d8504adfc7':
  address problems from comments
  fix and address comments
  change according to previous comments
  add missing piece
  remove unnecessary check macro
  fix intel compile warnings
  Revert "fix warnings from Intel compiler"
  Revert "fix warnings and some text alignment"
  Revert "let hdf5 pick up the right compiler in Intel environment"
  Revert "fix issues from previous PR comments"
  Revert "using a different MACRO"
  using a different MACRO
  fix issues from previous PR comments
  let hdf5 pick up the right compiler in Intel environment
  fix warnings and some text alignment
  fix warnings from Intel compiler
2020-01-06 12:17:10 -06:00
David Young
ec4418a757 In portable shell scripts (using #!/bin/sh) we have to use single square
brackets, [ ], instead of the bash-ism double square brackets, [[ ]].
2019-12-19 15:06:57 -06:00
Allen Byrne
51e7995513 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '6b670e353c1ea7f13ef72cc4297d9973102078bb':
  Correct assignment
  Fix java include, h5watch and remove clang tool.
  Add missing filenames
2019-12-11 08:29:33 -06:00
Allen Byrne
ad0a727c69 Correct assignment 2019-12-10 14:19:31 -06:00
Allen Byrne
7535f5a728 Fix java include, h5watch and remove clang tool. 2019-12-10 13:55:34 -06:00
Allen Byrne
e2d299225e HDFFV-10974 Change defines to eliminate Windows conflict 2019-12-10 07:43:28 -06:00
David Young
c8f533cfc3 Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,
including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and
I share.

Now I need to put this branch on a fork with a less confusing name than
vchoi_fork!
2019-12-09 10:30:58 -06:00
Allen Byrne
bc20a7e47a Fix windows 10 compile error 2019-12-07 10:26:30 -06:00
kmu
189935ff26 remove unnecessary check macro 2019-12-06 14:12:57 -06:00
kmu
132fa33dad fix intel compile warnings 2019-12-03 20:52:55 -06:00
kmu
e0262c8bed Revert "fix warnings from Intel compiler"
This reverts commit 8b9338ab57.
2019-11-26 17:24:48 -06:00
kmu
2bb0f52edf Revert "fix issues from previous PR comments"
This reverts commit d242a900f4.
2019-11-26 17:23:58 -06:00
kmu
4c8a2f726a Revert "using a different MACRO"
This reverts commit fc61b7a9f3.
2019-11-26 17:23:34 -06:00
kmu
fc61b7a9f3 using a different MACRO 2019-11-25 15:17:55 -06:00
kmu
d242a900f4 fix issues from previous PR comments 2019-11-25 12:48:51 -06:00
kmu
8b9338ab57 fix warnings from Intel compiler 2019-11-07 14:34:13 -06:00