The parallel test ran out of memory because 32bit binary default to use
less memory. Changed RUNPARALLEL to use larger memory (LDR_CNTRL=MAXDATA=0x2000
0000@DSA).
Tested: BP parallel.
RUNSERIAL=${RUNSERIAL="env LDR_CNTRL=MAXDATA=0x20000000@DSA"}
kind of mess things up for the parallel HDF5 configure.
Changed it to
RUNSERIAL=${RUNSERIAL="env LDR_CNTRL=MAXDATA=0x20000000@DSA MP_PROCS=1 MP_TASKS_PER_NODE=1 poe"}
if --enable-parallel.
Also merge powerpc-ibm-aix5.x with ibm-aix by making powerpc-ibm-aix5.x to
source ibm-aix just like ibm-aix6.x. This is in preparation that all AIX
platforms will eventually just use ibm-aix directly.
Fixed a small problme in ibm-flags: some older xlc (e.g. v7.1) prints the
version information with a leading blank. So, accommodate this pattern by
removing the "^".
Tested: LLNL uP, 32/64bits, serial/parallel. (parallel has tests failed
but this change is mainily for configure issues.)
Also tested BP, 32/64bits but serial only.
unknown versions of the C Intel compilers.
Modified apple config file to display Intel compiler information.
Updated RELEASE.txt notes accordingly.
Platfroms tested: jam, amani and dubna (Mac 64-bit) with Intel C, Fortran and C++ compilers.
Description:
In an AIX 6.1 system, configure --enable-shared could not build a shared
HDF5 library. The problem was because the version of config.guess was too
old to recongnize AIX 6.X and also configure.in had a local fix which did
not recognize AIX 6.X.
Solution:
1. Mike McGreevy updated bin/config.guess to handle AIX 6.X.
2 Albert fixed configure.in to recognize AIX 6.X.
Note that though HDF5 can build shared lib for AIX 6.X systems
but it still could not install the proper library as in AIX 5.X
systems. Also, bin/config.sub should be updated too.
Tested: BP which is the AIX 6.1 system that exposed this problem.
has been removed. According to the official description of DESTDIR by Gnu at
http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
prepended to the normal and complete install path that it precedes for the
purpose of installing in a temporary directory which is useful for building
rpms and other packages. The '/' after ${DESTDIR} will be followed by another
'/' at the beginning of the normal install path. When DESTDIR is empty the
path then begins with '//', which is incorrect and causes problems at least for
Cygwin.
The change made in config/commence.am affects many Makefile.*s when bin/reconfigure
is run. EXAMPLEDIRs had to be corrected individually.
Also the scripts to run examples after they are installed have checks added to see
that the fortran and c++ directories are present before trying to run the scripts
in them.
Tested with h5committest on amani, heiwa and jam.
Tested with h5committest on amani, jam, and heiwa, and on linew.
-This line, and those below, will be ignored--
M hdf5_1_8/test/Makefile.in
A hdf5_1_8/m4
AM hdf5_1_8/m4/ltsugar.m4
AM hdf5_1_8/m4/libtool.m4
AM hdf5_1_8/m4/ltversion.m4
AM hdf5_1_8/m4/lt~obsolete.m4
AM hdf5_1_8/m4/ltoptions.m4
M hdf5_1_8/configure
M hdf5_1_8/Makefile.in
M hdf5_1_8/testpar/Makefile.in
M hdf5_1_8/configure.in
M hdf5_1_8/src/Makefile.in
M hdf5_1_8/tools/Makefile.in
M hdf5_1_8/tools/misc/Makefile.in
M hdf5_1_8/tools/h5dump/Makefile.in
M hdf5_1_8/tools/h5repack/Makefile.in
M hdf5_1_8/tools/h5jam/Makefile.in
M hdf5_1_8/tools/h5diff/Makefile.in
M hdf5_1_8/tools/lib/Makefile.in
M hdf5_1_8/tools/h5copy/Makefile.in
M hdf5_1_8/tools/h5import/Makefile.in
M hdf5_1_8/tools/h5stat/Makefile.in
M hdf5_1_8/tools/h5ls/Makefile.in
M hdf5_1_8/hl/test/Makefile.in
M hdf5_1_8/hl/tools/Makefile.in
M hdf5_1_8/hl/tools/gif2h5/Makefile.in
M hdf5_1_8/hl/Makefile.in
M hdf5_1_8/hl/src/Makefile.in
M hdf5_1_8/hl/c++/test/Makefile.in
M hdf5_1_8/hl/c++/Makefile.in
M hdf5_1_8/hl/c++/src/Makefile.in
M hdf5_1_8/hl/c++/examples/Makefile.in
M hdf5_1_8/hl/fortran/test/Makefile.in
M hdf5_1_8/hl/fortran/Makefile.in
M hdf5_1_8/hl/fortran/src/Makefile.in
M hdf5_1_8/hl/fortran/examples/Makefile.in
M hdf5_1_8/hl/examples/Makefile.in
M hdf5_1_8/config/commence.am
M hdf5_1_8/MANIFEST
M hdf5_1_8/c++/test/Makefile.in
M hdf5_1_8/c++/Makefile.in
M hdf5_1_8/c++/src/Makefile.in
M hdf5_1_8/c++/examples/Makefile.in
M hdf5_1_8/bin/ltmain.sh
M hdf5_1_8/bin/reconfigure
M hdf5_1_8/perform/Makefile.in
M hdf5_1_8/fortran/test/Makefile.in
M hdf5_1_8/fortran/testpar/Makefile.in
M hdf5_1_8/fortran/Makefile.in
M hdf5_1_8/fortran/src/Makefile.in
M hdf5_1_8/fortran/examples/Makefile.in
M hdf5_1_8/aclocal.m4
M hdf5_1_8/examples/Makefile.in
Description:
The development (--disable-production) mode ran a long time, especially on the
testhdf5 (select) that exceeded the wall clock 10 minutes limits and was
terminated. It turned out the development had DEBUG_CFLAG set to "-g -xildoff".\
The -xildoff was added back when h5detect had errors when -g only was used. But
that bug does not exist any more since when only -g is used to build, h5detect
did not fail and all tests passed. Therefore -xildoff is removed.
Furthermore, when "-g -O" is used to build the library, debuggers such as
dbx can still use the executable, though some debugging ability like displaying
local variables is not available in optimized code. But overall execution time
shorten.
Therefore, the C, Fortran aand CXX DEBUG flags are all set to "-g -O" by
default.
Tested: in Linew using the default development mode because the changes affect
only the Sun platform.
Description:
testhdf5/select runs very slow when in --disable-production mode using
pgcc compiler. This was caused by the -Mchkfpstk compiler switch added
to the DEBUG_FLAGS in config/pgi-flags file.
Solution:
Removed -Mchkfpstk from both pgi-flags and pgi-fflags.
See Bug 2026 for dettails.
Tested: (no h5committest test since they don't use PGI compilers.)
Jam (linux32): using pgcc/pgf90/pgCC using default and --enable-production.
Amani (linux64):
using pgcc/pgf90/pgCC (32 bits mode by "-tp k8-32"), using default and --enable-production.
Added CMake commands to allow the install of the extlibs on windows.
Updated ctest warning exception regex for VS2010
Bring r19343 from trunk
Tested: windows
Corrected use/name of source folder aliases.
Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work).
Bring r19325 from trunk
Tested: local linux with mpich
Bump optimization down for Intel 10.* compilers, due to apparent bad code generation.
Tested on:
Linux/64 2.6 (cobalt) w/debug & production & Intel 11.1 compilers
(h5committest not appropriate)
Description: aix -q32 default to a memory limit that some HDF5 tests would
fail in malloc.
Solution:
Temporary hardset
RUNSERIAL=${RUNSERIAL="env LDR_CNTRL=MAXDATA=0x20000000@DSA"}
to bypass this problem until the test programs are fixed. Though -q64 binary
has a higher default memory limit and does not need this patch, it is applied
the same for the sake of simplicity since it is a temporary fix.
Tested:
in uP, tested 32 and -q64 modes. No h5committest since this applies to the
AIX platform only.
Description: aix -q32 default to a memory limit that some HDF5 tests would
fail in malloc.
Solution:
Temporary hardset
RUNSERIAL=${RUNSERIAL="env LDR_CNTRL=MAXDATA=0x20000000@DSA"}
to bypass this problem until the test programs are fixed. Though -q64 binary
has a higher default memory limit and does not need this patch, it is applied
the same for the sake of simplicity since it is a temporary fix.
Tested:
in BP, both -q32 and -q64 modes. No h5committest since this applies to the
AIX platform only.
Corrected use of "SKIP" message in cmake.
Corrections to cmake configuration files (for cmake external projects).
Community suggested changes.
Tested: local linux
