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876 Commits

Author SHA1 Message Date
Allen Byrne
d97fb1b109 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12) 
* commit '29efed58a861346be122b1ff0c50741206742322':
  Squashed commit of the token_refactoring branch:
  Add test for reference shutdown issue
  H5R: set app ref when incrementing ref_count on location held by reference (fix HDFFV-10992)
 2020-01-19 07:45:08 -06:00
Dana Robinson
2b1709f6ff Squashed commit of the token_refactoring branch: 2020-01-18 20:02:16 -08:00
Allen Byrne
c355ed9cf9 Merge perform standalone changes from develop 2020-01-17 13:56:40 -06:00
Allen Byrne
06f3c95c6e Merge tools changes from develop 2020-01-13 11:35:40 -06:00
Allen Byrne
281de962f5 Update file with changes from develop 2020-01-12 09:39:38 -06:00
Allen Byrne
6b6afd7a94 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12) 
* commit '7116d82f6b685261b5b4e64fada1a0a031cd7341':
  Remove mismerged code
  Cherry pick of 0225e6d596
  Cleanups from PR reviews
  Remove unnecessary H5CX call
  Refactor H5Dvlen_get_buf_size to use optional dataset operation, with generic fallback for VOL connectors that don't implement operation
  Refactor all the 'H5VL_*_optional' callbacks to move the type of operation out of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not.
  Update h5debug to retrieve file pointer through VOL framework
 2020-01-07 16:33:43 -06:00
Quincey Koziol
9a155a538b Cherry pick of 0225e6d596 2020-01-04 10:05:22 -06:00
Allen Byrne
16aa64aa72 Fix compile statement order 2019-12-20 14:19:05 -06:00
Allen Byrne
37529db25c HDFFV-10976,-10980 h5dump, h5ls, h5diff use new ref APIs 2019-12-20 13:40:08 -06:00
Allen Byrne
44e4f16e1d Revert and move declaration 2019-12-13 12:44:05 -06:00
Allen Byrne
bc288cb5b0 Correct compile and test Windows errors 2019-12-13 12:03:24 -06:00
Allen Byrne
e967d54ce3 Change defines to not conflict with windows 2019-12-11 09:05:36 -06:00
Allen Byrne
310b42e35a HDFFV-10876 Merge from develop 2019-12-09 15:44:38 -06:00
Jerome Soumagne
49fe497201 Revert "Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" 
This reverts commit 9f9336a5bd, reversing
changes made to 437a1919e7.
 2019-12-09 12:16:52 -06:00
Richard Warren
0c06cfc6ef Merged HDFFV-10929_2GB_testing to hdf5_1_12 2019-12-06 16:42:36 -05:00
Jerome Soumagne
b18e4b0f1a Fix reference type comparison in h5dump 2019-10-08 15:19:35 -05:00
Jerome Soumagne
383e7f7871 Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim() 2019-10-08 15:19:28 -05:00
Allen Byrne
b7fcb63746 More whitespace changes 2019-10-03 12:16:01 -05:00
Allen Byrne
6ae314a698 Whitespace and macro semi-colon 2019-10-02 12:42:31 -05:00
Dana Robinson
a6930a2bcf Renamed get/set_time() calls in the tools library to avoid name 
clash when building static parallel HDF5 w/ static linking to OpenMPI.
 2019-09-19 13:50:49 -07:00
Allen Byrne
369d17c05c HDFFV-10876 h5dump OPAQUE size should be optional 2019-08-27 15:10:37 -05:00
Dana Robinson
8c40dab59e Untangle #ifdef mess in ROS3 code. 2019-08-19 18:02:47 -07:00
Allen Byrne
64e6665b54 Add HD prefix to tests 2019-08-15 16:46:15 -05:00
Dana Robinson
d95745235a Updated h5trav.c to emit output that doesn't require ddl changes for map 
support.
 2019-08-13 10:55:34 -07:00
Dana Robinson
5b6bd7c922 Added the map (H5M) API 2019-08-13 01:36:42 -07:00
Larry Knox
8008294578 Squashed commit of the following: 
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
 2019-07-25 11:47:12 -05:00
Quincey Koziol
73df02f13c Merge branch 'develop' into feature/update_gcc_flags 2019-07-09 22:17:22 -05:00
Quincey Koziol
db7c43d375 Updates to warnhist script, along with a few cleanups, and add some comments 
to warning cleanups that are a bit obscure.
 2019-07-09 22:15:36 -05:00
Allen Byrne
ae0c16d1f2 HDFFV-10581 fix locations for static pdb files 2019-07-08 12:21:11 -05:00
Quincey Koziol
3b594992d6 Add support for GCC9, update warnhist script, and clean up warnings. 2019-07-02 23:43:45 -05:00
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding 
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
 2019-06-28 09:10:43 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them, 
clean up warnings.
 2019-06-21 10:05:34 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets 
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
 2019-06-18 07:46:25 -05:00
Binh-Minh Ribler
90d13bef33 Fixed typo 
Platforms tested:
    Darwin (osx1010test)
 2019-01-07 20:46:55 -06:00
Binh-Minh Ribler
78d0564c2a Refixed HDFFV-10578 
Description:
    Applied Neil's fix for this issue after removing previous
    attempt.  The resources are now released in init_objs() when
    failure occurs there.
    Neil will fix HDFFV-10676 separately.
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1010test)
 2019-01-07 20:36:34 -06:00
Allen Byrne
2c48f6bd00 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '7db3ea76da5d3b5c237a707b09d1618d3206ba83':
  Makes the installed header files the same between the autotools and CMake.
 2018-10-29 11:10:27 -05:00
Dana Robinson
62b92ddf40 Makes the installed header files the same between the autotools 
and CMake.

* CMake will no longer install private generated headers and tools
  library headers.
* Several empty public header files (which represent internal packages)
  were removed. These were only installed by CMake.
* Autotools installs will install H5FDwindows.h.

Fixes HDFFV-10614.
 2018-10-26 20:44:29 -07:00
Allen Byrne
cce1727525 TRILAB-81 check for func success before using value 2018-10-19 14:45:04 -05:00
Allen Byrne
633b7f93ce TRILAB-81 coverity fixes 2018-10-17 10:57:56 -05:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Jordan Henderson
d075c0854d Add quotes to places where MPI_C_LIBRARIES are linked against 2018-07-27 14:58:01 -05:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
 2018-05-14 11:20:03 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00