Commit Graph

6730 Commits

Author SHA1 Message Date
Vailin Choi
81b1ed4e17 Fix issues when deserializing point/all/none selection with version beyond the library's supported version:
(1) Verify the decoded version before proceeding further with deserialization
(2) Close the dataspace if errors occurred after opening the dataspace
2020-03-13 11:22:22 -05:00
David Young
9abbdeaa66 Merge pull request #2351 in HDFFV/hdf5 from ~DYOUNG/werror:b-bye-HDpthread_self to develop
* commit '224cb4a03406ed72e02d026efeab47fdf7f6b33b':
  Use a naked pthread_self() call in the HDF5 thread wrappers.
2020-03-05 11:06:39 -06:00
Jacob Smith
2d9a81878d Fix incorrect FUNC_LEAVE macro (should match FUNC_ENTER_*_TAG). 2020-02-28 17:14:45 -06:00
Quincey Koziol
38af6ee3d5 Switch the 'get offset' operation from a dataset 'get' callback to a [native]
dataset 'optional' operation.
2020-02-28 14:06:28 -06:00
Allen Byrne
666205a55f TRILAB-142 Change minimum CMake version to 3.12 2020-02-21 16:16:06 -06:00
Jordan Henderson
51b8c63864 Merge develop 2020-02-21 14:30:34 -06:00
David Young
158ba17be0 Replace the old H5F_DECODE_LENGTH() implementation with one that
initializes the variable it's loading on every path.
2020-02-19 13:18:48 -06:00
David Young
7b4131c2ae Merge pull request #2367 in HDFFV/hdf5 from ~DYOUNG/werror:unused to develop
* commit '50aac126d7c4082c2aeb0f3a68cad26bd1cd9783':
  Start to document the function/parameter/variable attribute macros.
  Filter all of the new _USED / _UNUSED type modifiers.
  H5_HAVE_PARALLEL, _DEBUG_API, etc.  Add attributes to some variables and parameters that are unused under some configurations.
2020-02-19 09:38:02 -06:00
David Young
47b79b7422 Merge pull request #2369 in HDFFV/hdf5 from ~DYOUNG/vs2010:develop to develop
Merged per discussion with Elena.

* commit 'b4697f969295245840350e17d75d92a0fdd7e7a9':
  Use HD prefix.
  Delete unhelpful comment per Jordan's question.
  Make sure that H5TS_thread_id() is available as either a function or a macro in all configurations.
  Provide local copies of err(3)- and errx(3)-alike functions for Visual Studio compatibility.
  Provide C99/POSIX.1 format strings PRI[doux]{8,16,32,64,MAX,PTR} on systems that are missing <inttypes.h>.
2020-02-17 10:47:29 -06:00
David Young
fa2b89c6b0 Merge pull request #2325 in HDFFV/hdf5 from ~DYOUNG/werror:h5t_copy to develop
Merged per discussion with Elena.

* commit '3f903a441ad84001ea66589728bd8b036b6fdfca':
  Take out the temporary performance tests.
  Make calls through a function pointer.  Use the same number of arguments, always.
  Increase iterations, provide a baseline for no-op, simplify the overhead case a bit.
  Temporarily add some code that measures the time to run the simplest possible H5T__copy_all()-like routine 10 million times and then measures the version with FUNC_ENTER_STATIC/_LEAVE_NOAPI and a HGOTO_ERROR() statement.
  H5T_copy() constification plus Quincey's contributions.
2020-02-17 10:46:52 -06:00
David Young
4c7254b6ec Make sure that H5TS_thread_id() is available as either a function or a macro in
all configurations.

(Merge remote-tracking branch 'origin/thread_id_everywhere' into vs2010-develop)
2020-02-10 16:59:14 -06:00
David Young
f9a8fd5a4c H5_HAVE_PARALLEL, _DEBUG_API, etc. Add attributes to some variables and
parameters that are unused under some configurations.
2020-02-10 14:41:20 -06:00
David Young
3d2c0d7b0d Delete unhelpful comment per Jordan's question. 2020-02-10 13:31:56 -06:00
David Young
39fd512fe7 Make sure that H5TS_thread_id() is available as either a function or a macro in
all configurations.

Previously it was neither declared nor defined in --disable-threadsafety
builds.  The compiler's warning got lost in the noise---I first saw the issue
because my -Werror branch stopped compiling cold---and the tests still linked
and ran.
2020-02-07 14:57:46 -06:00
Jacob Smith
6a93d1f834 Fix improper S3 signing key null check (HDFFV-11015). 2020-02-07 13:47:15 -06:00
David Young
b2cb485268 Provide C99/POSIX.1 format strings PRI[doux]{8,16,32,64,MAX,PTR} on systems
that are missing <inttypes.h>.
2020-02-07 11:40:31 -06:00
David Young
224cb4a034 Use a naked pthread_self() call in the HDF5 thread wrappers. 2020-02-05 19:31:59 -06:00
David Young
a0a75e7b6e If H5_HAVE_THREADSAFE is not #defined, define nothing but a stub implementation
of H5TS_thread_id().
2020-02-05 16:47:55 -06:00
David Young
cefacee21b src/H5Eint.c: #include H5TSprivate.h for H5TS_thread_id() definitions.
test/thread_id.c: move threads_failure() inside #ifdefs.
2020-02-03 16:33:28 -06:00
David Young
a20b68b257 Change thread IDs to uint64_t from unsigned long, per Quincey's suggestion.
Fix a typo in the H5TS_thread_init() comment and reword some ID
properties.
2020-02-03 16:23:06 -06:00
David Young
986c7451a0 Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX Threads
implementation ought to be portable to any system that has POSIX
Threads.  On Windows, I use the same API call as before.
2020-02-03 11:59:14 -06:00
Dana Robinson
0147d2493e Merge pull request #2329 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:H5MM_const to develop
* commit '10301154215fb6a22590e80f7b5ed0005f3e1786':
  Minor refactoring to the VFD info free call.
  Updated the 'const memory free' changes based on PR feedback.
  Added a free wrapper that lets us free constant pointers without generating warnings.
2020-01-30 18:50:41 -06:00
Dana Robinson
1030115421 Minor refactoring to the VFD info free call. 2020-01-30 16:47:30 -08:00
Dana Robinson
88b4c915e8 Updated the 'const memory free' changes based on PR feedback. 2020-01-30 16:31:11 -08:00
Allen Byrne
099e681401 VS2010 needs an underscore 2020-01-30 13:23:54 -06:00
Dana Robinson
9da387342e Added a free wrapper that lets us free constant pointers without
generating warnings.

Also, brought the const-ness of the VOL connector info in line with
the VFD info (not visible externally).
2020-01-30 11:01:25 -08:00
David Young
4a4755d314 H5T_copy() constification plus Quincey's contributions. 2020-01-29 14:11:10 -06:00
David Young
43d41633a1 Merge pull request #2318 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-1 to develop
* commit 'fa1b2f6ef35c459c9f74ead885c119ae7f61c056':
  Reduce differences between my -Werror branch and `develop`:
2020-01-29 13:51:52 -06:00
David Young
0d6e025888 Merge pull request #2320 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-2 to develop
* commit 'a5f236e83bdd29e660a55c5577a69a3809605cda':
  Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
2020-01-29 13:51:27 -06:00
David Young
1b49ccd7fa Merge pull request #2321 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-3 to develop
* commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a':
  testpar/t_2Gio.c: Fix a typo that I think was introduced by a         previous warnings PR.  An array element was assigned to         itself---shape[2]Â =Â shape[2];---instead of being assigned to         chunk[2].
2020-01-29 13:51:10 -06:00
David Young
f19e06b59e testpar/t_2Gio.c: Fix a typo that I think was introduced by a
previous warnings PR.  An array element was assigned to
        itself---shape[2]Â =Â shape[2];---instead of being assigned to
        chunk[2].

fortran/src/H5Pf.c: move conditional compilation controlled by
        H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

fortran/src/H5match_types.c: put a variable's declaration under the same
        conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
        use.

For now, skip compilation of some unused debug dump routines in the JNI.
While I'm in the JNI, delete a set-but-unused variable.

src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
        so that it's not declared but unused or vice versa.

test/cache_common.h: add an #include in to get some symbols we need to
        avoid implicit declaration warnings.

test/dsets.c: use a more conventional conditional-compilation syntax.

test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
        variables before use.

test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
        instead of `int **`.

testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
        "equal to 0?" is the question not "is false?"  Repair some
        indentation while I'm here.

testpar/testpar.h: repair misaligned line-continuation backslashes in a
        macro that probably should be a function so that we don't have
        to fiddle with the line continuation to begin with.

tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
        enums.

tools/test/perform/pio_engine.c: the compiler fusses if you cast a
        function call returning double directly to off_t.  It's ok if
        you cast a variable that's a double to off_t, however.  Write
        and use a new function, sqrto(), to avoid the cast warnings.
2020-01-29 11:44:39 -06:00
David Young
a5f236e83b Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
Reduce gratuitous casts---e.g., (size_t)1.

Use the right format string for a pointer.

In the H5C sanity checks, change a "size increase" variable from ssize_t
(too narrow) to int64_t (wide enough).

Parenthesize every appearance of `storage` in the macro
`H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an
expression like &sc and it works properly.

Disallow re-assignment of the `dset` parameter to H5D__chunk_init()
because it helped assure me that it's safe to replace the repeating
expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout.

Replace lengthy expressions such as
`&dset->shared->layout.storage.u.chunk` with `sc` throughout several
functions in H5Dchunk.c ISTR that the compiler warned that `sc` was
declared but unused in a couple of functions, and then I found that `sc`
could be used in many places.  Maybe the disused `sc` appeared because a
bunch of code was copied and pasted, I don't know.  Anyway, it's a lot
tighter code now that I use `sc`.

In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete()
I actually expand `sc` and another temporary variable, `pline`,
because they're used only in !defined(NDEBUG) code.  This squashes
unused-variable warnings in the defined(NDEBUG) configuration.

Don't drop the `volatile` qualification with a cast in
tools/src/h5import/h5import.c.
2020-01-29 10:47:30 -06:00
David Young
fa1b2f6ef3 Reduce differences between my -Werror branch and develop:
Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
shadowed declaration warnings about index(3).

Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
2020-01-28 20:35:28 -06:00
Jordan Henderson
e41f671d2f Introduce new H5VL _by_value routines 2020-01-28 18:18:38 -06:00
Kimmy Mu
71c050f837 Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
* commit '406330addf45529ecdd088f4d22e9aab9a03661d':
  rename macro
  change condition
  pick up from Dave's fix
  leave Wswitch-default for later fix
  fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
2020-01-28 13:28:26 -06:00
kmu
5163a7e1cf fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow 2020-01-27 09:01:32 -06:00
Dana Robinson
8b4d774eb9 Replaced my_isnan with C99 isnan in h5diff. 2020-01-23 20:12:16 -08:00
Dana Robinson
601752e76e Removed H5_DEC_ENUM 2020-01-23 14:43:59 -08:00
Dana Robinson
492d186a5c Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""
This reverts commit 6486e06545.
2020-01-23 14:40:47 -08:00
kmu
af5c33afab remove unnecessary stuff 2020-01-23 16:15:52 -06:00
kmu
838d4ec56b squash cast warning fix 2020-01-23 15:12:00 -06:00
kmu
2de0ce0d8b merge and fix conflict 2020-01-22 21:30:36 -06:00
Kimmy Mu
720ba8624a Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop
* commit '9f80ffa1f1908975b3100814b2529bf779521e13':
  fix missing prototype warning
2020-01-22 20:58:42 -06:00
Kimmy Mu
8ce59829e4 Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop
* commit '145ef3ceee20c28a443bd11507c58858bea3f889':
  more cleanup
  change it back
  pick up missing piece
  fix unused related warnings
  removed unused parameter
  more fix and address comments
  remove unsed var,function,macro, etc
2020-01-22 19:46:53 -06:00
kmu
145ef3ceee more cleanup 2020-01-22 19:46:12 -06:00
Larry Knox
a92cfed71e Remove irrelevant sentence from comment. 2020-01-22 08:30:14 -06:00
Larry Knox
30ccab0fb3 Add v111 version for H5O functions to enable version1 default for HDF5
1.8-1.10 and version 3 default for HDF5 1.12.  Version 2 functions are
available (deprecated) but will not be the default for any version.
2020-01-21 15:08:17 -06:00
kmu
9f80ffa1f1 fix missing prototype warning 2020-01-21 12:30:40 -06:00
kmu
408b9b1f3b fix uninitizlized warning 2020-01-21 12:29:48 -06:00
kmu
9be5b2842e merge and fix 2020-01-20 21:11:32 -06:00