Commit Graph

284 Commits

Author SHA1 Message Date
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Binh-Minh Ribler
39e3da7563 Improving tests
Description:
    - Added test for version bounds with nested datatypes
    - Added script for additional version bound test in h5repack
    - Cleaned up tests for consistency
    - Removed extra included header files
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (moohan)
    Darwin (osx1010test)
2018-02-17 16:18:37 -06:00
Allen Byrne
41d541f1c2 More includes cleanup 2018-02-14 11:14:26 -06:00
Binh-Minh Ribler
0a61befddc Additional tests
Description:
    - Revised and add more variety to version bound tests per review
    - Revised gen_bounds.c per review
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-02-13 11:05:08 -06:00
Allen Byrne
637a8f7562 Correct linkage of filters and other libs 2017-11-16 09:04:51 -06:00
Allen Byrne
c577a5e995 HDFFV-10297 update calls to H5Zfilter_avail 2017-10-09 17:00:15 -05:00
Vailin Choi
8935c921f7 Fix for HDFFV-10217 infinite loop in H5VM_power2up().
The function H5VM_power2up() returns the next power of 2 for n.
When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping.
The fix ensures that the function checks for n >= 2^63 and returns 0.
2017-07-10 03:22:48 -05:00
Dana Robinson
1e9354bcf5 Merge branch 'develop' into windows_open 2017-05-31 15:07:49 -07:00
Dana Robinson
18ae45027c Fixed additional minor warnings. 2017-05-25 08:42:18 -04:00
lrknox
c8a5520d3a Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -
changed to H5Dopen2 to fix failure with --with-default-api-version=v16
configure option.
2017-05-10 14:44:58 -05:00
Vailin Choi
d436db6c6e Fix for the two issues reported in HDFFV-10051
Modifications made based on the review comments from pull request #494
Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-08 22:14:20 -05:00
Vailin Choi
6a4f1187cc Fix for the two issues reported in HDFFV-10051:
(1) Repeated open/close of a compact dataset fails due to the
increment of ndims in the dataset structure for every open.
--This is done only for chunked dataset via H5D__chunk_set_sizes().
(2) layout "dirty" flag for a compact dataset is not reset
properly after flushing the data at dataset close.
--Reset the "dirty" flag before flushing the message to the object header
via H5O_msg_write().
Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-06 23:40:44 -05:00
Dana Robinson
734aebc395 Rework of the POSIX file open permissions and macros to clean up
HDopen() calls.

Also fixed a minor const warning in the core VFD.
2017-04-28 18:13:22 -04:00
Dana Robinson
d3b664b6a7 Changed the Windows POSIX open() file permissions to be correct
according to MSDN. Partial fix for HDFFV-9630.
2017-04-28 08:11:29 -07:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Quincey Koziol
5df52404bc Misc. small cleanups to sync against incoming page buffering changes. 2017-03-02 06:24:46 -08:00
Quincey Koziol
fc482f126f Bring over tweak for missing environment variable. 2016-12-18 00:59:36 -08:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests
and the tool and API wrappers will be coming in over the weekend.
2016-12-02 08:07:04 -08:00
Frank.Willmore
526bcc242d Changes to be committed:
modified:   bittests.c
	modified:   cmpd_dset.c
	modified:   dsets.c
	modified:   dt_arith.c
	modified:   dtypes.c
	modified:   extend.c
	modified:   fillval.c
	modified:   filter_fail.c
	modified:   flush1.c
	modified:   gen_cross.c
	modified:   hyperslab.c
	modified:   istore.c
	modified:   links.c
	modified:   links_env.c
	modified:   objcopy.c
	modified:   plugin.c
	modified:   tcheck_version.c
	modified:   unlink.c
	modified:   unregister.c

Minor fixes to replace numeric exit codes with MACRO declarations. Not all codes found were boolean, and those cases were not changed.
2016-10-25 09:53:44 -05:00
Dana Robinson
5309971949 Fixed Windows dsets.c test failure.
A 'static' keyword was removed from an array that needs it on Windows
during a warning removal overhaul. Replacing it fixes the error.

Tested on: 64-bit Windows 7 w/ VS 2015
2016-10-14 15:45:38 -04:00
Dana Robinson
9d4cbecb2f Revert "Fixed Windows test failures."
This reverts commit f1dcda5c8e.
2016-10-14 15:42:55 -04:00
derobins
f1dcda5c8e Fixed Windows test failures.
Replaced a static keyword that was deleted during a warnings overhaul.

Tested on 64-bit Visual Studio 2015
2016-10-14 15:32:27 -04:00
Quincey Koziol
5a78801830 Clean up hardcoded constants and check return values better. (Comments from
group code review)
2016-09-29 13:17:55 -07:00
Quincey Koziol
fa66428a6d Description:
Further warning cleanups: from 667 warnings to 503.
2016-09-27 10:29:16 -07:00
Quincey Koziol
bb19817c9f [svn-r30189] Description:
Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-07-17 19:18:42 -05:00
Quincey Koziol
b8f809981b [svn-r30112] Description:
Move updated flush dependency code in metadata cache from revise_chunks
branch to trunk.  Also many of the cleanups from r30111 in the revise_chunks
branch.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-06-28 16:39:09 -05:00
Quincey Koziol
b2d6d68d5d [svn-r29770] Description:
Bring 'none' chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-23 00:03:00 -05:00
Quincey Koziol
5108468482 [svn-r29743] Description:
Close another FAPL in the test_missing_chunk() routine.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-19 09:25:49 -05:00
Quincey Koziol
f7aff7d5cf [svn-r29738] Description:
Bring "single" chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-18 23:21:12 -05:00
Quincey Koziol
6ce67650fb [svn-r29736] Description:
Close FAPL that was leaked in zero_dims test.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production, including check-vfd
    (h5committest forthcoming)
2016-04-18 21:42:30 -05:00
Quincey Koziol
36062736a5 [svn-r29722] Description:
Bring over more dataset tests from the revise_chunks branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-17 02:26:51 -05:00
Quincey Koziol
81ef260f6b [svn-r29717] Description:
Correct chunk index computation for earrays and farrays, particularly when
copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size)
that require iterating over all chunks.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-04-16 03:42:48 -05:00
Dana Robinson
e5c94192d7 [svn-r29659] Added fixed array chunk indexing from revise_chunks.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           Autotools serial w/ Java, Fortran, & C++
2016-04-07 13:21:47 -05:00
Quincey Koziol
5d46ad9b39 [svn-r29635] Description:
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-05 02:12:56 -05:00
Quincey Koziol
9d2178ab88 [svn-r29607] Description:
Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
    (h5committest forthcoming)
2016-04-02 04:39:32 -05:00
Dana Robinson
9333a2e39c [svn-r29548] Minor normalization w/ trunk in preparation for big merge.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           autotools parallel (MPICH 3.1.4)
2016-03-23 22:58:43 -05:00
Quincey Koziol
9ceca0f89a [svn-r28710] Description:
Bring r28708 from revise_chunks branch:

    Fix earray, farray and btree2 use of incorrect file pointer when two files
are opened and used to access the data structure.  Misc. minor code cleanups
as well.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    h5committest forthcoming
2015-12-19 09:42:15 -05:00
Jerome Soumagne
2094d86461 [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly and fix misuse of hbool_t in various places

Fix initialization of H5Pgcpl/ocpl structs in property decoding routines

Tested on:
    Linux/32 (jam)
    Linux/64 (platypus)
    Linux/PPC64 (ostrich)
    MacOSX/64 10.11
2015-10-20 01:28:17 -05:00
Quincey Koziol
222e7186ea [svn-r27810] Description:
Clean up resources on failure

Tested on:
    Linux/32 2.6.x (jam) w/Purify
2015-09-16 16:57:01 -05:00
Quincey Koziol
81b5e1c51f [svn-r27807] Description:
Close memory leak on failure.

Tested on:
    Linux/32 2.6.x (jam) w/purify
2015-09-16 15:30:26 -05:00
Dana Robinson
2385b2b0ad [svn-r27800] Minor warning fixes in the library tests.
Tested on: jam (too minor for h5committest)
2015-09-16 08:54:23 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
2015-08-31 14:04:23 -05:00
Jerome Soumagne
ab7d724ffd [svn-r27548] Revert r27545 2015-08-21 17:44:22 -05:00
Jerome Soumagne
7ce2d52cf6 [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly
2015-08-21 13:52:30 -05:00