Commit Graph

553 Commits

Author SHA1 Message Date
Dana Robinson
b9dbabc152 VFD SWMR: Sync with develop (#811)
* Normalization with develop

* Removes checks and work-arounds for strtoll and strtoull (#769)

* Removes checks for (v)snprintf, which are C99 (#772)

* Update missing release note info. (#776)

* Replaces the H5_OVERRIDE macro with override (#773)

The macro is no longer necessary now that we require C++11.

* Cleans up some POSIX header bits in H5private.h (#783)

* Removes outdated checks for ways inline might be defined (#781)

These are obsolete now that we require C99.

* Removes checks for system(), which is C89/90 (#782)

* Removes C++ dependency on H5private.h (#774)

* Removes C++ dependency on H5private.h

Most C API calls have been removed, aside from a few uses of free,
where we just dropped the 'HD'. A couple of H5_ATTR_UNUSED macros
were also replaced with (void) statements.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Further simplifies Autotools type size checks (#789)

Also fixes an issue where clock_gettime and difftime are not detected
due to earlier simplifications of this code.

* Release Note (#784)

* Normalization of CMake H5pubconf.h with Autotools (#791)

Mostly just moving things around and changing the comments to keep the
delta small. The only symbol change is that for curl/curl.h which I
changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol
is not used in the library and is just an artifact of the checks.

* Fix tools test (#794)

* Removes ancient Autotools cruft (#790)

* Reorganization of C and POSIX headers in H5public.h & H5private.h (#793)

* Reorganization of C and POSIX headers in H5public.h & H5private.h

Consolidated and removed duplicates

* It turns out Windows has sys/types.h

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Removes checks for signal and set/longjmp, which are C89 (#798)

Also removes checks for setjmp.h and stddef.h

* Assume frexpl/f and fabsl/f, which are C99 (#799)

* Assume the library has C99 types in C++ type code (#806)

* Assume the library has C99 types in C++ type code

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes obsolete equivalents of C99's __func__ (#800)

* Cleans up POSIX/C bits in H5private.h (#804)

* Cleans up POSIX/C bits in H5private.h

* Assume difftime exists (C89)
* Reorg AC_CHECK_HEADERS so headers are in alphabetical order
* Split off networking-related AC_CHECK_HEADERS
* Remove unused UNAME_CYGWIN from configure.ac
* Remove checks for unused sys/timeb.h
* Tidying pass over H5private.h HD prefix macros
* Tidy H5win32defs.h
* Add HD prefix to various scanf calls

* Committing clang-format changes

* Fixes to the alarm(2) code used in the tests to make Windows happy

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Brings the tools getopt(3) replacement into the main library (#803)

* Moves get_option from the tools library to the C library

* Adds H5 prefix to get_option call and variables

* Renames the H5_get_option long options struct and enum

* Removes type guesses when C99 types are missing (#807)

* Assume C99 types exist in H5detect.c (#808)

* Fixes parallel issues from recent C99 changes

* Adds MPE FUNC --> __func__ changes missed in earlier PRs

* Fix typo

* Fixes parallel issues from recent C99 changes (#809)

* Fixes parallel issues from recent C99 changes

* Adds MPE FUNC --> __func__ changes missed in earlier PRs

* Even more missed FUNC --> __func__ macros

* Removes remaining H5_TIME_WITH_SYS_TIME cruft (#810)

Mostly from CMake

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-06-30 11:02:42 -07:00
Dana Robinson
9a4b225cb0 VFD SWMR: sync with develop (#725)
* Brings CMake updates from develop

* Brings reduction in pedantic casts from develop

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Formatted source

* Bring over some VOL registration changes

* VOL cleanup

* H5VL_request_status_t substitutions

* H5F.c cleanup

* Minor API tweaks from develop

* Moves H5G package init/teardown to H5Gint.c

* H5G cleanup

* H5M cleanup

* H5SM cleanup

* H5T cleanup

* H5R cleanup

* H5Lpublic.h cleanup

* H5L cleanup

* H5O cleanup

* H5A, H5CS, and H5AC cleanup

* Moved H5A init/teardown code to H5Aint.c

* Moves H5D I/O functions to H5D.c

* H5D cleanup

* Misc minor cleanup

* H5P close cleanup

* H5Tpublic.h cleanup

* Fixes err_compat test

* H5PLpublic.h cleanup

* Updates H5Ppublic.h

* H5Fpublic.h updates

* H5A.c cleanup

* Brings over H5Aexists and related changes

* Brings CMake shell testing changes from develop

* Close callback changes

* H5R and H5Tcommit normalization

* err_compat test works now

* H5O tweaks

* Updates VOL registration code

* Brings over H5VL_create_object

* H5Tconv.c reformatting

* H5T.c tweaks

* Brings datatype and reference updates from develop

* Brings VOL plugin loading changes from develop

* Brings event sets from develop

* Brings async functions over

* Tools changes

* Brings over many tools changes from develop

* Brings VOL flags from develop

* Fixes h5dump double/float tests

* Updates h5repack tests

* Brings h5diff test changes from develop

* Last h5dump changes

* Brings test changes from develop

* Committing clang-format changes

* Tidied h5_testing()

* Brings chunk iteration code + misc from develop

* Updates vds test

* Enables external link parallel test

* Brings updated property lists from develop

* H5G changes from develop

* H5MF cleanup

* Brings vfd_swmr test back into CMake

* Updates threadsafe test

* Updates plist test

* Brings recent changes from develop

* Require a C++11 compiler to build the C++ wrappers (#693)

* Committing clang-format changes

* Requires a C++11 compiler to build the C++ wrappers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699)

* Removes pre-C99 build and header cruft (#700)

* Assumes ANSI C headers exist
* Assumes stdbool.h, stdint.h, and inttypes.h are present
* Assumes the C++ compiler can handle stdint.h
* Removes all work-arounds for missing functionality, especially stdbool.h

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Updates release documents

* Brings parallel changes from develop

* Adds a VFD/parallel check program for the VFD SWMR shell test

* Updates MANIFEST

* Disable building VFD SWMR acceptance tests on CMake

* Removes err.h from genall5.c

* Partial cleanup of H5Cpkg.h

* Fixes printf specifiers in H5Cdbg.c

* Java and fortran cmake changes (#694)

* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

* Fix perl and doxygen CMake code

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

* Add stamp files to BYPRODUCTS

* Only one copy of file exists

* Fix custom cmmand depends targets

* Fix fortran custom command DEPENDS

* Add LD_LIBRARY_PATH to tests

* Add custom target for DEPENDS

* Add h5detect conditionaly to generated target DEPENDS

* Correct DEPENDS targets

* Parallel builds need the mpi compiler for pkgconfig scripts.

* install only if MPI build

* Fortran target depends

* Remove incorrect source attribute

* doxygen adjustments

* doxygen build updates

* Correct version

* Correct function version - function has been merged to 1.12

* Correct version string for map functions

* Cleanup warnings for tools debug builds

* TRILAB-227 - fix indexing for h5diff selections

* Correct location of pos to index function call

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES because of AppleClang

* if blocks needed for build modes

* Update list of DT platforms

* VS2019 correctly displays float values

* revert VS2019 change

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

* Java reference functions updated

enabled fortran in cmake gcc action yaml file
java reference test changed to correctly test refs
jni reference functions that create ids changed to use jni id logging

* Correct BYPRODUCTS argument

* Correct more genereated files BYPRODUCTS

* BYPRODUCTS must have unique locations

* Fix typo

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Split H5L.c internal code to H5Lint.c (#691)

* Committing clang-format changes

* Splits internal parts of H5L.c to H5Lint.c

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Clean up type size checks in configure.ac (#702)

* Committing clang-format changes

* C++ warning and build fixes (#707)

* Committing clang-format changes

* C++ build and warning updates

* Fixes all warnings on C++ (with gcc 9.3)
* Updates CMake and Autotools C++ builds

* Undo warning clobber

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes some DEC Alpha cruft from H5detect and H5private.h (#708)

* Cleans up hsize_t and haddr_t size guessing (#709)

* Cleans up definitions of haddr_t and hsize_t + cruft removal

* Formatted source

* Updates PGI C/C++ configurations (#715)

* Updates PGI C/C++ configurations

Tweaks some settings and configures pgc++ to use C++11

* Updated copyright information

* Adds an Intel C++ configuration file (#716)

* Adds an Intel C++ configuration file

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Updates bin/trace script to correctly wrap H5TRACE macros near clang-format column limit (#719)

* Removes clang-format comments from H5O.c call

* Fixes bin/trace to correctly wrap lines near the clang-format limit

* Removed unused variable from bin/trace

* Fixes issue with ccmake that prevents building Fortran (#723)

ccmake runs iteratively, and the check_fortran_source_runs
macros were clobbering a single output file that did not
get updated on further configure iterations

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-06-04 07:29:02 -07:00
Dana Robinson
7dded355b8 VFD SWMR: Sync with develop (#711)
* Brings CMake updates from develop

* Brings reduction in pedantic casts from develop

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Formatted source

* Bring over some VOL registration changes

* VOL cleanup

* H5VL_request_status_t substitutions

* H5F.c cleanup

* Minor API tweaks from develop

* Moves H5G package init/teardown to H5Gint.c

* H5G cleanup

* H5M cleanup

* H5SM cleanup

* H5T cleanup

* H5R cleanup

* H5Lpublic.h cleanup

* H5L cleanup

* H5O cleanup

* H5A, H5CS, and H5AC cleanup

* Moved H5A init/teardown code to H5Aint.c

* Moves H5D I/O functions to H5D.c

* H5D cleanup

* Misc minor cleanup

* H5P close cleanup

* H5Tpublic.h cleanup

* Fixes err_compat test

* H5PLpublic.h cleanup

* Updates H5Ppublic.h

* H5Fpublic.h updates

* H5A.c cleanup

* Brings over H5Aexists and related changes

* Brings CMake shell testing changes from develop

* Close callback changes

* H5R and H5Tcommit normalization

* err_compat test works now

* H5O tweaks

* Updates VOL registration code

* Brings over H5VL_create_object

* H5Tconv.c reformatting

* H5T.c tweaks

* Brings datatype and reference updates from develop

* Brings VOL plugin loading changes from develop

* Brings event sets from develop

* Brings async functions over

* Tools changes

* Brings over many tools changes from develop

* Brings VOL flags from develop

* Fixes h5dump double/float tests

* Updates h5repack tests

* Brings h5diff test changes from develop

* Last h5dump changes

* Brings test changes from develop

* Committing clang-format changes

* Tidied h5_testing()

* Brings chunk iteration code + misc from develop

* Updates vds test

* Enables external link parallel test

* Brings updated property lists from develop

* H5G changes from develop

* H5MF cleanup

* Brings vfd_swmr test back into CMake

* Updates threadsafe test

* Updates plist test

* Brings recent changes from develop

* Require a C++11 compiler to build the C++ wrappers (#693)

* Committing clang-format changes

* Requires a C++11 compiler to build the C++ wrappers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699)

* Removes pre-C99 build and header cruft (#700)

* Assumes ANSI C headers exist
* Assumes stdbool.h, stdint.h, and inttypes.h are present
* Assumes the C++ compiler can handle stdint.h
* Removes all work-arounds for missing functionality, especially stdbool.h

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Updates release documents

* Brings parallel changes from develop

* Adds a VFD/parallel check program for the VFD SWMR shell test

* Updates MANIFEST

* Disable building VFD SWMR acceptance tests on CMake

* Removes err.h from genall5.c

* Partial cleanup of H5Cpkg.h

* Fixes printf specifiers in H5Cdbg.c

* Java and fortran cmake changes (#694)

* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

* Fix perl and doxygen CMake code

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

* Add stamp files to BYPRODUCTS

* Only one copy of file exists

* Fix custom cmmand depends targets

* Fix fortran custom command DEPENDS

* Add LD_LIBRARY_PATH to tests

* Add custom target for DEPENDS

* Add h5detect conditionaly to generated target DEPENDS

* Correct DEPENDS targets

* Parallel builds need the mpi compiler for pkgconfig scripts.

* install only if MPI build

* Fortran target depends

* Remove incorrect source attribute

* doxygen adjustments

* doxygen build updates

* Correct version

* Correct function version - function has been merged to 1.12

* Correct version string for map functions

* Cleanup warnings for tools debug builds

* TRILAB-227 - fix indexing for h5diff selections

* Correct location of pos to index function call

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES because of AppleClang

* if blocks needed for build modes

* Update list of DT platforms

* VS2019 correctly displays float values

* revert VS2019 change

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

* Java reference functions updated

enabled fortran in cmake gcc action yaml file
java reference test changed to correctly test refs
jni reference functions that create ids changed to use jni id logging

* Correct BYPRODUCTS argument

* Correct more genereated files BYPRODUCTS

* BYPRODUCTS must have unique locations

* Fix typo

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Split H5L.c internal code to H5Lint.c (#691)

* Committing clang-format changes

* Splits internal parts of H5L.c to H5Lint.c

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Clean up type size checks in configure.ac (#702)

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-06-01 09:05:56 -07:00
Dana Robinson
f86004dbde Normalization with develop (#704) 2021-05-28 08:48:51 -07:00
Dana Robinson
7f58a89578 Misc normalization from develop 2021-05-07 10:56:07 -07:00
Dana Robinson
0ab5dd5e8e Brings more develop code over, especially Doxygen 2021-05-03 14:55:26 -07:00
Dana Robinson
ed31eeacfa Many small changes from develop. Should allows running VFD SWMR
tests from CMake.
2021-05-03 12:54:30 -07:00
Dana Robinson
1dbb83aabd Brings file locking changes from develop 2021-03-25 00:32:40 -07:00
Dana Robinson
711d12bb58 Brings the 'warnings-as-errors' changes from develop 2021-03-24 19:11:34 -07:00
Dana Robinson
67cfa2396c Updates license url and history docs 2021-03-24 18:29:11 -07:00
Dana Robinson
bdac2ecdbf Brings some Autotools improvements over from develop
* configure.ac tidying
* helpful XCode comments
* FreeBSD improvements
* Fixes for finding Java on MacOS
* The improved warnhist script
2021-03-24 16:02:07 -07:00
Dana Robinson
ca3721e3d7 Merge remote-tracking branch 'canonical/feature/vfd_swmr' into vfd_swmr/thg_standards 2021-03-23 14:37:51 -07:00
Dana Robinson
915e36f1d2 Protects timespeccmp 2021-03-23 14:32:25 -07:00
Dana Robinson
b8c5c9f20d Removes libgen.h detection from Autotools and CMake 2021-03-09 06:52:26 -08:00
Dana Robinson
ae24b82f77 Brings MacOS fixes from main feature branch 2021-03-02 14:30:01 -08:00
Dana Robinson
f1bc0c97a9 Makes libgen.h functions ready for implementation on Windows 2021-03-02 03:22:50 -08:00
Dana Robinson
d7b277a22a Improves autotools and CMake support for sigtimedwait alternative 2021-03-01 13:54:27 -08:00
Dana Robinson
0e9f9a280a Adds MacOS work-around for sigtimedwait(2) in the VFD SWMR tests 2021-02-26 11:34:53 -08:00
David Young
dc97b9a165 Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmr 2020-08-04 10:22:47 -05:00
Dana Robinson
b801338079 Removed POSIX #defines from configure on Solaris. 2020-07-14 07:49:00 -05:00
Larry Knox
800f93f7c9 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2020-07-10 13:44:08 -05:00
Larry Knox
0f3fd8d53d Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails.
Fix for HDFFV-10830.
2020-07-10 13:39:59 -05:00
Dana Robinson
d9105b2fcf Fixes Autotools builds on Solaris after monotonic timer changes
clock_gettime() wasn't being found, so some configure changes
were needed to set an appropriate POSIX level and use a C99
compiler. This required several compiler flag changes.

Autotools only
2020-07-06 19:22:26 -05:00
Larry Knox
870e3ba3f4 Add missing '"'. 2020-07-02 18:20:36 -05:00
Larry Knox
fc69de0e8a Lib files needed are now copied to a subdirectory in the java/test
directory, and on Macs the loader path for libhdf5.xxxs.so is changed
in the temporary copy of libhdf5_java.dylib.
Fix for HDFFV-11063
2020-07-02 11:29:12 -05:00
Quincey Koziol
e767f44e95 Merge remote-tracking branch 'origin/develop' into monotonic_timer 2020-06-26 18:57:38 -05:00
buildbot
715055bfdd Add c++ to --enable-sanitize-checks option. 2020-06-10 16:52:46 -05:00
Larry Knox
de9491e365 Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers.
Switched from cut to awk in testcheck_version.sh.in to avoid dependence
on tab vs. " " in version definitions in H5public.h.
2020-06-06 14:36:44 -05:00
Larry Knox
f7bc306c19 Add files for adding warning flags for clang compilers in autotools
configure.
2020-06-02 15:53:58 -05:00
Larry Knox
8767748f87 Add C++ warnings treated as error for autotools builds. 2020-05-20 09:37:19 -05:00
Jacob Smith
094effdf0d Add enable-mirror-vfd flag to configure options. 2020-05-20 09:34:20 -05:00
Jacob Smith
b11015c4cc Add Splitter VFD to library.
* "Simultaneous and equivalent" Read-Write and Write-Only channels for
  file I/O.
* Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for
  now, preventing issues with multi-file drivers.

Add Mirror VFD to library.

* Write-only operations over a network.
* Uses TCP/IP sockets.
* Server and auxiliary server-shutdown programs provided in a new directory,
  `utils/mirror_vfd`.
* Automated testing via loopback ("remote" of localhost).
2020-05-20 09:34:20 -05:00
David Young
03a86e551d Incorporate the H5_ECFLAGS into the library CFLAGS. Now a bunch of errors will
occur.  Next commit will demote the warnings promoted to errors back to
warnings again.
2020-05-20 09:31:56 -05:00
David Young
77144641df Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2020-05-20 09:20:17 -05:00
David Young
2b863a8119 Change some GCC warnings to errors. Fix code to quiet some warnings. 2020-05-20 09:17:27 -05:00
David Young
8d3d457890 Let us override the examples directory using --with-examplesdir=DIR.
This is handy for NetBSD where HDF5 examples are installed
by convention in $prefix/share/examples/hdf5/ rather than in
${prefix}/share/hdf5_examples/, which is the HDF5 default.

Place hdf5_examples/ under ${datarootdir} which on most systems will be
${prefix}/share/, anyway.
2020-05-20 09:17:25 -05:00
Larry Knox
de51001fcd Add C++ warnings treated as error for autotools builds. 2020-04-23 13:14:56 -05:00
Jacob Smith
664fc6af47 Add enable-mirror-vfd flag to configure options. 2020-04-08 16:51:38 -05:00
Jacob Smith
075e74e9b2 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a 2020-04-07 10:29:00 -05:00
Jacob Smith
b65405439d Add Splitter VFD to library.
* "Simultaneous and equivalent" Read-Write and Write-Only channels for
  file I/O.
* Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for
  now, preventing issues with multi-file drivers.

Add Mirror VFD to library.

* Write-only operations over a network.
* Uses TCP/IP sockets.
* Server and auxiliary server-shutdown programs provided in a new directory,
  `utils/mirror_vfd`.
* Automated testing via loopback ("remote" of localhost).
2020-03-13 17:13:17 -05:00
David Young
626c60dec4 Incorporate the H5_ECFLAGS into the library CFLAGS. Now a bunch of errors will
occur.  Next commit will demote the warnings promoted to errors back to
warnings again.
2020-02-25 11:59:37 -06:00
David Young
c8f533cfc3 Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,
including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and
I share.

Now I need to put this branch on a fork with a less confusing name than
vchoi_fork!
2019-12-09 10:30:58 -06:00
David Young
0108072f7a Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2019-11-27 11:26:02 -06:00
David Young
4981e83740 Merge remote-tracking branch 'hdf5/develop' into add-werror-and-squash-some
to pick up the NetBSD-compatibility changes that I recently merged.
2019-11-08 12:19:31 -06:00
David Young
34eff2aae5 Change some GCC warnings to errors. Fix code to quiet some warnings. 2019-11-05 12:14:26 -06:00
David Young
82f647534c Make some NetBSD compatibility patches. 2019-10-03 17:30:46 -05:00
David Young
b8a93a7224 Let us override the examples directory using --with-examplesdir=DIR.
This is handy for NetBSD where HDF5 examples are installed
by convention in $prefix/share/examples/hdf5/ rather than in
${prefix}/share/hdf5_examples/, which is the HDF5 default.

Place hdf5_examples/ under ${datarootdir} which on most systems will be
${prefix}/share/, anyway.
2019-10-03 16:01:40 -05:00
David Young
6083b740ad Make the HDF5 configure script grok NetBSD. 2019-10-03 16:01:40 -05:00
Allen Byrne
d08db4f855 Remove file script 2019-09-25 17:35:52 -05:00
Allen Byrne
b2f52d0b07 Update versioning to next major version 2019-09-25 17:28:17 -05:00