Commit Graph

15 Commits

Author SHA1 Message Date
Dana Robinson
13d852d89e 1.12: Brings C++ wrappers in line with develop, minus C++11 bits (#1604) 2022-04-07 09:23:35 -05:00
Larry Knox
bddd148fd2 Misc fixes from develop nov21 - feb22 (#1580)
* Make default to build high-level tools the same as default for (#1234)

high-level library.

* Updated README.txt to README.md (#1375)

* H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289

* H5Oget_info_by_name, name can be any object, not just a group

* Converted README.txt to README.md and updated files referring to README.txt to README.md.

* removed references to README.txt

* updated MANIFEST

* Snprintf2 (#1399)

* Replaced many uses of sprintf with safer snprintf

Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable.

* Removed unnecessary use of static on small buffers

This improves thread safety.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Replaced several uses of sprintf with safer snprintf (#1383)

* Replaced several uses of sprintf with safer snprintf

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Used clang-tidy to change all floating point f suffixes to F (#1359)

* Added another missing override keyword on a dtor (#1384)

* Creating FUNDING.yml (#1427)

* Creating FUNDING.yml

Will add sponsor this project widget to the repo's page.

* Correct file name

Add sponsor widget; filename typo fixed.

* Update MANIFEST

* Fixed AbstractDs::getVarLenType documentation (#1441)

* Committing clang-format changes

* Open bsd fixes (#1195)

* Fix end of line alignment.

Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: loricooperhdf <lori.cooper@hdfgroup.org>
Co-authored-by: myd7349 <myd7349@gmail.com>
2022-04-05 08:20:19 -05:00
Allen Byrne
b3e02f8e9a Implemented suggestion in #1381 for dtransform test (#1490) 2022-03-11 17:02:38 -06:00
Larry Knox
a09e1ea219 Hdf5 merge issue #458 to hdf5_1_12 (#463)
* Snapshot version 1.12 release 1-3.  Update  version to 1.12.1-4.

* First cut of the H5 public API documentation. (#80)

* First cut of the H5 public API documentation.

* Added H5Z "bonus track."

* Applied Quincey's patch.

* Added the missing patches from Quincey's original patch.

* H5PL (complete) and basic H5VL API documentation.

* Added H5I API docs.

* Added H5L API docs.

* First installment from Elena's H5T batch.

* Second installment of Elena's H5T batch.

* Final installment of Elena's H5T batch.

* Full set of current H5F documentation. (#105)

* First cut of the H5 public API documentation.

* Added H5Z "bonus track."

* Applied Quincey's patch.

* Added the missing patches from Quincey's original patch.

* H5PL (complete) and basic H5VL API documentation.

* Added H5I API docs.

* Added H5L API docs.

* First installment from Elena's H5T batch.

* Second installment of Elena's H5T batch.

* Final installment of Elena's H5T batch.

* Migrated documentation for SWMR functions.

* Catching up on MDC functions.

* Integrated the H5F MDC function documentation.

* Added MDC and parallel H5F functions.

* Slightly updated main page.

* Added doxygen/dox/H5AC_cache_config_t.dox to MANIFEST.

* Doxygen - added (mostly) beginner functions (#112)

* Doxygen - added (mostly) beginner functions

* Removed duplicate H5Pset_szip function

* Add src/H5module.h to MANIFEST.

* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Avoid aligned access for references by decoding into temporary buffer and then copying the result into the actual buffer.   Update test to be more thorough with using compound datatype fields everywhere. (#206)

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Fixes various warnings noticed on Windows (#425)

* Fixes various warnings noticed on Windows

- Adds a prototype for our implementation of vasprintf
- Return type of H5_get_utf16_str() is now non-const
- Fixes possible uninitialized return type in Wremove_utf8
- Better isolation of fork() code in accum.c:test_swmr_write_big()
- Better isolation of non-zlib code in dsets.c:test_filter_delete()
- Removed unused variable in trefer.c:test_reference_cmpnd_obj()

* Fixes clang-format issues

* Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429)

* Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes

Removes useless const declarations.

* Fixed most readability-non-const-parameter warnings

These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature.

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Added C++11 override keyword where appropriate (#433)

Added H5_OVERRIDE macro for compatibility with both C++11 and older.

* Various clang tidy warning fixes (#448)

* Fixed clang-tidy bugprone-reserved-identifier warnings

* Fixed clang-tidy bugprone-assert-side-effect warnings

* Fixed clang-tidy bugprone-copy-constructor-init warning

* Fixed clang-tidy readability-redundant-preprocessor warning

For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block.

Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing.  Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS.

* Fixed clang-tidy readability-redundant-string-init warnings

* Fixed some clang-tidy performance-type-promotion-in-math-fn warnings

* Fixed clang-tidy performance-unnecessary-value-param warnings

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Removed checks/workarounds for pre-C++89 compatibility (#449)

After 30+ years, just assume that the following exist:
- extension-less includes
- namespaces
- std::
- static_cast
- bool

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings

This change was generated entirely by clang-tidy itself.

* Reformat code with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Remove 2 functions incorrectly merged from develop in a cherry-pick merge of PR #451.

Co-authored-by: Gerd Heber <gheber@hdfgroup.org>
Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com>
Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Quincey Koziol <quincey@koziol.cc>
Co-authored-by: Sean McBride <sean@rogue-research.com>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
2021-03-12 12:00:15 -06:00
Larry Knox
8d4a9d589b Update URL in source file Copyright headers for web copy of COPYING
file - files not in src or test.
2021-02-20 08:08:39 -06:00
Allen Byrne
f1ba03cea5 Source formatted 2020-10-01 09:04:36 -05:00
Allen Byrne
dc9774a642 Whitespace cleanup compared to develop 2020-05-09 12:20:05 -05:00
Dana Robinson
2b1709f6ff Squashed commit of the token_refactoring branch: 2020-01-18 20:02:16 -08:00
Binh-Minh Ribler
e33d677636 Various code cleanup
Description:
    - Replaced H5Location::exists with H5Location::nameExists and marked
      H5Location::exists as deprecated.
    - Miscellaneous test cleanup for consistency.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (jelly)
    Darwin (osx1010test)
2017-12-04 12:21:12 -06:00
Binh-Minh Ribler
c7b27a7674 New overloaded functions and tests
Description:
    - Added VarLenType::VarLenType(const DataType& base_type)
    - Marked VarLenType::VarLenType(const DataType* base_type) deprecated
    - Added a static wrapper for H5Tdetect_class for PredType
        static bool DataType::detectClass(const PredType& pred_type, ...)
    - Removed the deprecated function Exception::printError() from code
    - Miscellaneous improvements in comments
    - Added test functions test_detect_type_class() and test_vltype()
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (jelly)
    Darwin (osx1010test)
2017-09-12 14:46:06 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Binh-Minh Ribler
50ac3cd6ec Description:
Miscellaneous clean-up: format and comments
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2017-03-17 11:03:18 -05:00
Binh-Minh Ribler
861a849530 Description:
Only format changes: mostly tabs vs. spaces
Platforms tested:
    Linux/64 (jelly) - very minor
2017-03-03 08:45:57 -06:00
Binh-Minh Ribler
a903cbafa8 Description:
Removed obsolet macros from C++ API:
	H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
    Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
    until further checking is done.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
    Jelly
2016-10-19 15:50:17 -05:00
Binh-Minh Ribler
7ef33fa7b3 Purpose: Fix bug HDFFR-9920 cont.
Description:
    Adding user's test revealed a flaw in the fix.
    Moved CommonFG's functions in Group to H5Location, so that they
    could be called by objects that can be used to specify a location
    Also, rearranged many "#include" header files to resolve conflicts.

Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-09-21 14:53:17 -05:00