Commit Graph

21 Commits

Author SHA1 Message Date
Larry Knox
17a1f1a597 [svn-r25017] Merge r24997 changes from trunk.
Added compiler versions for mpich to settings file and configure summary.
For make installcheck, compile and run installed examples using the installed scripts.  They
  were being compiled but not run.
Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled.
  Set flag to -O3 in production mode for Intel compilers other than those with specified other settings.
  Gentoo patches:
    Remove unnecessary setting of LD_LIBRARY_PATH from configure.
    Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c.

Tested with h5committest on jam, koala, ostrich and platypus.
2014-04-11 13:50:55 -05:00
Quincey Koziol
25147d5567 [svn-r24878] Description:
Bring r24864 from trunk to 1.8 branch:

    Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
    MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
    (daily tested on trunk)
2014-03-24 12:41:18 -05:00
Quincey Koziol
f2aa62ec76 [svn-r24810] Description:
Bring r24803 & r24804 from trunk to 1.8 branch:

r24804:
   Brought changes from Coverity branch back to trunk, and cleaned up misc.
   other warnings & formatting issues:

   r20833:
   Fixed Coverity 667 and 668 with real integer overflow tests this time.

   r20834:
   Use HDstrncpy and HDstrncat. --gh 

   r20835:
   Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159

   r20836:
   Fixed coverity 585 by casting output of fgetc() to a char.

   r20837:
   Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967.

r24803:
  Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from
  src/H5private.h to src/H5public.h.  Wrap typedef of hsize_t and hssize_t
  in DIAG_OFF(long-long) macros.

  Clean up a bunch of "macro '-' is unused" warnings.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-03-17 09:28:40 -05:00
Quincey Koziol
86d6651b44 [svn-r24728] Description:
Bring r24726 & r24727 from trunk to 1.8 branch:

Description:
   Revert some earlier usage of strncpy, which was incorrect.

   Bring Coverity changes from branch back to trunk:

r20821:
   Use HDstrncpy. --gh
   (Fixed already, with strdup)

r20822:
   (Not merged, incorrect use of HDstrncpy())

r20823:
   (Not merged, incorrect use of HDstrncpy())

r20824:
   Maintenance: Bug fix: addressed CID 666.
   Value stored at *expression_len should be used in the call to
       HD5packFstring to avoid overflow (and unnecessary arithmetic
       calculation and casting) 

r20825:
   Issue 642: Added check for error and handler with print to stderr and exit.

r20826:
   Undo revision 20818, as that issue has already been fixed in the 1.8 branch
       and trunk (but not coverity branch)

r20827:
   (Not merged, incorrect use of HDstrncpy())

r20828:
   Use HDstrncpy. --gh
   (Corrected use of strncpy())

r20829:
   Check return of H5Lget_val(print_udata->fid, path, targbuf,
       linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0.
       Check if  H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL,
       &filename, &objname) was successful and allow print. Otherwise filename
       and objname are not created. (init those to NULL)

r20830:
   resolved coverity issues 939, 940, 941, 944, and 947.

   all were complaints about use of sprintf, and in all cases, the
   buffers used were large enough for all eventualities.

   Resolved issue by replacing calls to sprintf with calls
   to snprintf.

r20831:
   Maintenance: Addressed CID 852
   Replaced sprintf with snprintf

r20832:
   Purpose: Fix valgrind issues with hl/examples/ex_image2

   Description:
   Modified hl/examples/ex_image2 to free global "gbuf" before exit.

Tested on:
   Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety
   (too minor to require h5committest)
2014-02-21 11:59:33 -05:00
Jonathan Kim
d283a83a49 [svn-r24039] Purpose:
Warning fixes (Jonathan and Peter) from coverity fix.
  merge from r23986 trunk.

Tested: 
    jam-pp (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
2013-08-20 16:52:41 -05:00
Quincey Koziol
6e58f671ec [svn-r24021] Description:
Bring r24020 from trunk to 1.8 branch:

    Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-17 19:31:01 -05:00
Mohamad Chaarawi
38bdc241ed [svn-r23868] bring r 23862 from trunk:
Change printfs in perform output and h5dump to prevent overflow.
This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450
2013-07-08 09:04:23 -05:00
Mohamad Chaarawi
5ee14b07b9 [svn-r23809] revert printf format changes to do a better solution. 2013-06-24 13:16:27 -05:00
Mohamad Chaarawi
afea64705b [svn-r23808] merge 23801 from trunk.
Change printfs in perform output for long long to use %lld instead of %Hd. The later is for shorts.
This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450

Tested on Jam.
2013-06-24 08:51:40 -05:00
Allen Byrne
68d93b7f4e [svn-r22013] HDFFV-7560:
Merge 1.8 and h5dump/tools and tests based on tools library from trunk.
Reduced warnings.

HDFFV-7949:
Remove duplicated functions in h5ls

Tested: local linux,h5committest
2012-03-02 09:21:13 -05:00
Quincey Koziol
fe7e78f2d9 [svn-r20049] Description:
Bring r20048 from trunk to 1.8 branch:

    Bring Coverity changes back to trunk:

r19733:
Fix memory leak in h5perf_serial.  Global buffer "buffer2" was allocated at the
beginning of do_sio() but never freed.  Added call to free() at end of do_sio().

r19734:
Fix memory leak in iopipe.  Buffer "the_data" was allocated at the beginning of
main() but never freed.  Added call to free() at end of main().


Tested on:
  Coverity branch in daily tests & Mac
2011-02-04 22:00:49 -05:00
Albert Cheng
5f87e53d04 [svn-r17717] Cosmetic change to use exit(EXIT_FAILURE) instead of exit(1).
Tested: jam-pp.
2009-10-21 13:59:17 -05:00
Quincey Koziol
981ba55190 [svn-r17266] Description:
Clean up various compiler warnings from IRIX64 build

Tested on:
    Mac OS X/32 (amazon) debug & production
    (yes, I know it's not an IRIX64 system :-)
    Too minor to require h5committest
2009-07-29 19:17:17 -05:00
Allen Byrne
fae180790e [svn-r17042] Updated perf_serial test to work on windows. Bring back from trunk.
Tested:
Windows
2009-06-12 08:30:16 -05:00
Quincey Koziol
828e7e2416 [svn-r16566] Description:
Bring r16560 back from trunk.

Tested on:
    Mac OS X/32 10.5.6 (amazon) debug & production
    (Following up with tests on more platforms)
2009-03-10 20:44:36 -05:00
Allen Byrne
c880943ce9 [svn-r16490] Fixed bug #1459 by eliminating the macro long_long and replacing all instances with long long.
Tested:
   h5comittest
   fedora 10 x64
   XP32, VNET
2009-02-18 15:05:49 -05:00
Quincey Koziol
b9be045596 [svn-r15629] Description:
Remove trailing whitespace from C/C++ source files, with the following
script:

   foreach f (*.[ch] *.cpp)
       sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
   end

Tested on:
   Mac OS X/32 10.5.5 (amazon)
   No need for h5committest, just whitespace changes...
2008-09-16 11:22:16 -05:00
Christian Chilan
c9af566e1d [svn-r15562] Added support for serial prefix HDF5_PREFIX.
Tested on kagiso, smirom, and linew.
2008-08-29 16:31:04 -05:00
Christian Chilan
0304c9a5fa [svn-r15180] Change copyright notice to THG only. 2008-06-09 12:19:55 -05:00
Christian Chilan
a9fa9a4a37 [svn-r15129] Revise man page and copyright notice.
Tested on smirom.
2008-06-03 00:29:41 -05:00
Elena Pourmal
4b2c3c5e07 [svn-r14949] Maintenance: brought serial h5perf tool from trunk; use
svn merge -r 14824:14945 http://svn.hdfgroup.uiuc.edu/hdf5/trunk/perform
             command to bring changes in.

Platforms tested: kagiso with Intel compilers, smirom with GNU compiler
2008-05-06 15:51:39 -05:00