Commit Graph

96 Commits

Author SHA1 Message Date
github-actions
443187860a Committing clang-format changes 2021-08-04 22:33:57 +00:00
Dana Robinson
93fbbf8fd9 Removes obsolete equivalents of C99's __func__ (#800)
Conflicts:
	bin/trace
	src/H5A.c
	src/H5D.c
	src/H5F.c
	src/H5G.c
	src/H5L.c
	src/H5M.c
	src/H5O.c
	src/H5R.c
	src/H5T.c
	src/H5Tcommit.c
	src/H5VLcallback.c
	src/H5private.h
	tools/test/h5repack/h5repacktst.c
2021-08-04 16:22:13 -05:00
Allen Byrne
490e966dd9 Hdf5 1 10 merges from dev (#662)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source

* Change windows TS to use older VS.

* Mostly all javadoc fixes, one argument rename.

* synch file

* Merge of long double fix and compiler flags

* HDFFV-11229 merge changes from develop

* HDFFV-11229 correct test script

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* minor whitespace

* remove unneeded macro

* Committing clang-format changes

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Fortran target depends

* Remove incorrect source attribute

* Revert define removal

* printf specifiers and VS2015 min changes

* Committing clang-format changes

* Add time struct

* TRILAB-227 and tools debug merges from develop

* Merge various changes from dev

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-05-25 10:03:14 -05:00
Allen Byrne
27198d814a Hdf5 1 10 merge of printf specifiers and VS2015 min changes (#612)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source

* Change windows TS to use older VS.

* Mostly all javadoc fixes, one argument rename.

* synch file

* Merge of long double fix and compiler flags

* HDFFV-11229 merge changes from develop

* HDFFV-11229 correct test script

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* minor whitespace

* remove unneeded macro

* Committing clang-format changes

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Fortran target depends

* Remove incorrect source attribute

* Revert define removal

* printf specifiers and VS2015 min changes

* Committing clang-format changes

* Add time struct

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-04-30 11:07:50 -05:00
Allen Byrne
c9caf426a8 1 10 Merge of long double fix and compiler flags (#531)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source

* Change windows TS to use older VS.

* Mostly all javadoc fixes, one argument rename.

* synch file

* Merge of long double fix and compiler flags

* HDFFV-11229 merge changes from develop

* HDFFV-11229 correct test script

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* minor whitespace

* remove unneeded macro

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-04-19 17:19:58 -05:00
Larry Knox
b42635ad88 Hdf5 merge issue 458 v110 (#465)
* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Update license url (#332)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.

* Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429)

* Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes

Removes useless const declarations.

* Fixed most readability-non-const-parameter warnings

These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature.

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Added C++11 override keyword where appropriate (#433)

Added H5_OVERRIDE macro for compatibility with both C++11 and older.

* Various clang tidy warning fixes (#448)

* Fixed clang-tidy bugprone-reserved-identifier warnings

* Fixed clang-tidy bugprone-assert-side-effect warnings

* Fixed clang-tidy bugprone-copy-constructor-init warning

* Fixed clang-tidy readability-redundant-preprocessor warning

For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block.

Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing.  Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS.

* Fixed clang-tidy readability-redundant-string-init warnings

* Fixed some clang-tidy performance-type-promotion-in-math-fn warnings

* Fixed clang-tidy performance-unnecessary-value-param warnings

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Removed checks/workarounds for pre-C++89 compatibility (#449)

After 30+ years, just assume that the following exist:
- extension-less includes
- namespaces
- std::
- static_cast
- bool

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings

This change was generated entirely by clang-tidy itself.

* Reformat code with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Fix clang-tidy suspicious string compare in H5A.c missed in merge.

Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
2021-03-12 11:58:10 -06:00
Allen Byrne
e65814bf8e 1 10 merges from develop (#419)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev
2021-03-03 14:15:55 -06:00
Larry Knox
dea591a353 Hdf5 1 10 update license url part2 (#404)
* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Update license url (#332)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.

* Update license url part2 (#333)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.

* Update URL in source file Copyright headers for web.

Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
2021-03-01 10:35:51 -06:00
Allen Byrne
7cf4913baf 1 10 merge recent changes from develop (#345)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop
2021-02-17 08:55:42 -06:00
Allen Byrne
ec8ad09125 Source formatted 2020-10-01 10:29:53 -05:00
Allen Byrne
732a1a35f3 Additional warnings removed 2020-07-30 14:58:34 -05:00
Allen Byrne
617d269ceb Warnings reduction in tools 2020-07-30 14:21:26 -05:00
Allen Byrne
099c7242fb Merge from dev of tools changes 2020-07-22 15:03:22 -05:00
Allen Byrne
049ade7a31 Check sizeof type to use correct ref_type 2020-03-09 13:55:40 -05:00
Allen Byrne
eae9f6b209 Fixed region refs 2020-03-01 11:01:31 -06:00
Allen Byrne
d9774f3852 h5dump object reference fixed 2020-02-29 20:17:20 -06:00
Allen Byrne
7fa510520b Updated reference code 2020-02-29 13:59:37 -06:00
Allen Byrne
467b5d565c Merge CMake and tools changes from develop 2020-02-27 16:54:52 -06:00
Allen Byrne
922d10ff8e small syntax addition 2019-09-23 12:17:29 -05:00
Allen Byrne
161501e1c0 Whitespace updates 2019-09-23 11:52:35 -05:00
Allen Byrne
3fed3735db HDFFV-10903 merge updated changes 2019-09-17 14:41:00 -05:00
Allen Byrne
1fab09b1d2 HDFFV-10876 link fix and compile issue 2019-08-27 15:16:24 -05:00
Allen Byrne
3b9e13a1b8 TRILAB-82 fix coverity high-impact issues 2018-11-08 11:27:22 -06:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
f0b0c35afb HDFFV-10396 Eliminate overuse of h5tools_simple_prefix function 2018-01-25 09:58:24 -06:00
Allen Byrne
8e2cedd066 HDFFV-10297 Cleanup, Initialize variables 2017-10-23 09:26:15 -05:00
Allen Byrne
448217e7e3 HDFFV-10297 Fix compiler compaliants 2017-10-16 09:19:41 -05:00
Allen Byrne
d5c073d406 HDFFV-10296 Update tools lib to use the error handling macros. 2017-10-13 16:34:01 -05:00
Dana Robinson
ee7816bbfb Stripped C standard library headers (and a couple of macros)
from the tools code. This is all handled in H5private.h, which
should be included in all tools source files.
2017-07-17 13:24:01 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol
101fa7af8e Cleanups and normalizations against incoming page_buffering changes. 2017-02-19 18:28:52 -08:00
Quincey Koziol
57afb68e46 Bring SWMR-related tools changes from revise_chunks to develop. 2016-12-11 11:25:08 -08:00
Quincey Koziol
83724bd787 [svn-r30113] Description:
Clean up warnings (from 2774 -> 1560, with my standard debug build)

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-06-28 16:53:48 -05:00
Allen Byrne
40cdbe0b8d [svn-r29274] HDFFV-9698: fix subsetting issues with h5dump 2016-03-04 15:41:12 -05:00
Allen Byrne
d0444d4f2b [svn-r29261] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0 2016-03-03 10:27:48 -05:00
Allen Byrne
f0a7f5978e [svn-r29257] HDFFV-9705: h5dump should not print filters or allocation time info for VDS files 2016-03-03 08:56:44 -05:00
Larry Knox
b3426914a8 [svn-r28669] Changes to correct errors found with -ansi flag.
h5tools_dump.c
    Removed 3 lines commented out with //.
h5_vds-percival-unlim.c
    Changed C++-style comment to C-style comment.

Tested with h5committest.new.
2015-12-15 15:52:12 -05:00
Quincey Koziol
d3c6b4ad72 [svn-r27848] Description:
Clean up warnings and some normalization against trunk.

Tested:
    McaOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-21 19:21:18 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description:
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-20 21:18:45 -05:00
Dana Robinson
d90e4acfa7 [svn-r27801] Minor warning fixes in the tools.
Tested on: jam (too minor for h5committest)
2015-09-16 10:23:16 -05:00
Quincey Koziol
db8e289abe [svn-r27632] Description:
Revert changes to pass file pointer to selection serialize/deserialize
routines.  Also patch back in some changes that were merged out in the
previous merge w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 16:58:15 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description:
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 15:14:57 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
2015-08-31 14:04:23 -05:00
Allen Byrne
78e128c544 [svn-r27195] Add h5dump cmake tests and files.
Add tools gen cmake files
move testfiles for pbits to subdir as well as vds

Tested: local linux
2015-06-12 16:29:20 -05:00
Allen Byrne
11efaf4ff7 [svn-r26798] Fix other storage layout whitespace 2015-04-13 15:47:03 -05:00
Allen Byrne
26e709edc6 [svn-r26794] Fix formatting for selection. Irregular reuses blocks and points for datasets however indentation after line breaks are an issue. 2015-04-13 15:15:00 -05:00
Neil Fortner
6a27582a44 [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch.
Tested: ummon
2015-04-10 18:00:48 -05:00
Allen Byrne
e270981617 [svn-r26611] Remove complete section of VIRTUAL output. 2015-03-27 09:23:24 -05:00