----------------------
./INSTALL
Added warnings and a disclaimer about GNU, DEC, Irix64, and NT
compilers that generate incorrect machine code.
./configure.in
./src/H5private.h
Detects and includes <sys/param.h> which is needed on FreeBSD
before <sys/proc.h> even though we only really using anything
from <sys/proc.h> on the DEC Alpha.
./config/irix64
Turned off warnings for duplicate definitions from the linker
because -lnsl on irix has the same stuff in it as -lc.
./config/irix6.x
Split up the CC and CFLAGS settings like with irix64 so that
compilers besides `-n32' can be used.
./bin/snapshot
The snapshots are tagged with names like hdf5-1_1_52 which is
similar to the way the releases are tagged (cvs doesn't allow
dots in tags).
./test/dtypes.c
./src/H5private.h
./src/H5Tconv.c
Fixed some alignment violations on the DEC when using high
optimization levels. The DEC incorrectly optimizes certain
memcpy() and memmove() calls when the source argument is not
word aligned if the call looks like it's copying an atomic
data type.
./test/hyperslab
Worked around code generation bugs in the Irix64 Mongoose 7.00
compiler by casting some `unsigned long' values to `unsigned'
in an expression.
./src/H5Ocomp.c
Fixed a place where %d was used to print a size_t.
----------------------
./config/irix64
The old (-32) compiler is now supported by setting envrionment
CC='cc -32'. The -64 compiler is the default or you can set
CC='cc -64'.
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5G.c
./src/H5I.c
./src/H5Ocomp.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5Z.c
./src/H5detect.c
./test/big.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/enum.c
./test/mtime.c
./test/ohdr.c
./tools/h5ls.c
Fixed lots of warnings on Irix64. Mailed a few remaining
warnings in H5S to Quincey and a few in the dumper to
Ruey-Hsia.
----------------------
./configure.in
./acconfig.h
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5public.h
./src/H5Omtime.c
Check for <stddef.h>
Checks for `__tm_gmtoff' in `struct tm' because old versions
of GNU libc are different than recent versions. This fixes the
failing mtime test.
./bin/config.guess
./config/freebsd2.2.7 [REMOVED]
./config/freebsd [ADDED]
Changed the name so it works with all versions of FreeBSD.
./src/H5.c
Moved H5F after H5T and H5G in H5_term_library() to satisfy
dependencies.
./src/H5G.c
Fixed a bug that caused H5Gcreate() to fail if the group name
had trailing slashes.
./src/H5Gpublic.h
Changed `group_name' to `name' in a prototype.
./src/Makefile.in
Dynamic library on Linux, but needs for work to be generally
useful.
./src/H5HG.c
./src/H5HGprivate.h
Fixed alignment problems when using old GCC compilers (like
the one shipped with RedHad Linux).
./tools/h5ls.c
Fixed a bug where the contents of the root group could be
listed twice if there was a link back to the root
group. Similarly for groups that are mentioned on the command
line.
Fixed a bug where unknown types were printed with a random
type class number.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
Fixed O(log N) conversion bugs.
Bug fix
Problem:
Depending on how the string size changes, different buffers are used
when copying from one array of strings to another array of strings.
An ASSERTION() is set up to check the validity of the buffer being
used for each element of the string array being copied. This
ASSERTION() fails for a 10 element string array of string length 42
being copied to a 10 element string array of string length 50.
Solution:
The overlap variable (olap) is calculated slightly differently.
Also, since olap and nelmts are unsigned types, the conditional
assignment:
d = elmtno >= nelmts-olap ? dbuf : dp
should be rewitten as:
d = elmtno+olap >= nelmts ? dbuf : dp
This same problem/solution may exist in H5T_conv_i_i(), and
H5T_conv_f_f().
Platform tested:
Solaris2.5
----------------------
./src/H5.c
./src/H5private.h
Renamed `library_initialize_g' to `H5_libinit_g' to make it
conform to our naming scheme.
./src/H5I.c
Fixed a bug in H5I_dec_ref() that caused the return value to
always be zero instead of the new reference count.
./src/H5.c
./src/H5Odtype.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
Added support for enumeration data types.
./src/H5RA.c
Renamed H5T_insert() to H5T_struct_insert() and added
H5T_enum_insert().
./src/H5RA.c
./src/H5Shyper.c
Added casts to size_t for the third argument of memcpy() to
shut up a warning message from insure++.
./src/H5T.c
Changed "can't" to "unable to" in some error messages to be
more consistent.
./src/H5detect.c
If fork() or waitpid() are unavailable then we assume no
alignment constraints. Hopefully this is the case only on NT
and Intel CPU's don't have alignment constraints.
./src/H5public.h
Include <limits.h> because the H5T_NATIVE_CHAR macro needs the
definition for CHAR_MIN.
----------------------
./INSTALL
Added warning that enabling debugging code can adversely
affect performance even when the debugging isn't turned on at
run-time. Performance testing shows that under certain
circumstances (like data type conversions of compound types)
the H5_timer functions, although only a few lines each,
contribute a fairly large percent to the execution time.
./src/H5T.c
./src/H5Tpkg.h
./src/H5Tpublic.h
Improved the H5Tunregister() function to make unregistering
more flexible. It takes the same arguments as H5Tregister()
but also accepts wild cards. All conversion functions that
match the H5Tunregister() search criteria are removed from the
global type conversion table.
The H5Tregister_hard() and H5Tregister_soft() were combined
into a single function called H5Tregister() which is the
counterpart to H5Tunregister(). A new `persistence' argument
was added to differentiate between the two types of conversion
functions.
The application is allowed to register a hard conversion
function for the no-op conversion path although the library
isn't obligated to call it (it usually does). This is mostly
for completeness, but the application might use it to help
determine if the raw data pipeline was able to use the
optimized path for the case when no type conversion is
necessary. The library doesn't allow this path to be
unregistered although the application can redefine it as often
as it likes.
Fixed the type conversion tables in preparation for MT-safety
and to fix previosly-known design bugs wrt. unregistering
conversion functions or changing the C function associated
with a conversion path. The MT-safety stuff is documented in a
separate white paper.
Increased the conversion function debugging name from 9
characters to 31 characters so the output can be more
descriptive.
Moved conversion path statistics from the H5T_cdata_t member
into the conversion path itself. This makes H5T_cdata_t
contain only application-visible data structures.
./src/H5A.c
./src/H5D.c
./src/H5Ofill.c
./src/H5P.c
./src/H5T.c
Improved the way type conversion functions are called so the
caller doesn't have to check for data type debugging and
increment type conversion timers and statistics.
Changed check for no-op conversion since it is now
application-definable and there may even be more than one
definition at a time in a multi-threaded application (one
thread might be using the no-op conversion path when some
other thread changes its definition -- the first thread still
sees the original defintion until it's done with the
operation).
./doc/html/Datatypes.html
Updated the user guide to reflect the changes to data type
conversion registration functions.
./bin/trace
./src/H5.c
Added tracing support for the new H5T_pers_t data type.
./test/dtypes.c
Added printf to display alignment value if non-aligned data
types are being tested.
./test/h5test.c
Modified the H5Tunregister() calls to use the new
arguments. All 94 of those calls can be replaced by a single
call to the new H5Tunregister() function.
./src/H5.c
Added HAVE_GETTIMEOFDAY around an auto variable and
initialized the elapsed time to zero when gettimeofday() is
not available.
./src/H5F.c
./src/H5Fprivate.h
./src/H5P.c
Added an H5*_init() functions which do the same thing as
H5*_init_interface() but can be called from other packages and
don't do anything if the interface is already initialized.
This fixes a couple memory leaks in applications that
repeatedly close and open the library with H5close().
./src/H5Tconv.c
Optimized some data alignment code in the hardware conversion
functions.
Hardware conversions accumulate statistics about source and
destination data alignment and print that information when the
conversion function is unregistered (usually when the
application exits) if data type debugging is compiled into the
library and enabled at run-time.
The conversion caching was cleaned up for the compound data
type conversion function. It now caches conversion paths in a
manner that will be MT-safe and is much simpler than the old
method. Also cleaned up some array index maps.
./src/H5detect.c
Fixd mispelling of alingemnt.
./src/H5private.h
Changed `TRUE' to `1' in assignment to interface_initialize_g
in FUNC_ENTER macro definition.
./tools/testh5dump.sh
Completely rewritten to make it shorter, better documented,
and conforming to most of the other test outputs.
The comparison of the actual output with the expected output
is insensitive to differences in white space. The test now
passes for the first time on Linux where the output width
wasn't as expected but the output was otherwise correct.
./tools/testfiles/tall-1.ddl
./tools/testfiles/tall-2.ddl
./tools/testfiles/tall-3.ddl
./tools/testfiles/tattr-1.ddl
./tools/testfiles/tattr-2.ddl
./tools/testfiles/tattr-3.ddl
./tools/testfiles/tattr-4.ddl
./tools/testfiles/tcomp-1.ddl
./tools/testfiles/tcomp-2.ddl
./tools/testfiles/tcomp-3.ddl
./tools/testfiles/tcomp-4.ddl
./tools/testfiles/tdset-1.ddl
./tools/testfiles/tdset-2.ddl
./tools/testfiles/tdset-3.ddl
./tools/testfiles/tdset-4.ddl
./tools/testfiles/tgroup-1.ddl
./tools/testfiles/tgroup-2.ddl
./tools/testfiles/tgroup-3.ddl
./tools/testfiles/tlink-1.ddl
./tools/testfiles/tlink-2.ddl
./tools/testfiles/tlink-3.ddl
./tools/testfiles/tlink-4.ddl
./tools/testfiles/tlink-5.ddl
./tools/testfiles/tslink-1.ddl
./tools/testfiles/tslink-2.ddl
Changed `../h5dump' to just `h5dump'.
./config/alpha-dec-osf4.0
Added more warning and optimization switches to the native
compiler.
----------------------
./MANIFEST
Added tcompound2.{dmp,h5} and tdset2.{dmp,h5} used by the
h5toh4 testing.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
Added check for <sys/timeb.h> for Win32.
Determines sizeof(char) just so we have a complete list of
type sizes defined as preprocessor symbols.
./src/H5detect.c
./src/H5T.c
./src/H5Tpkg.h
Detects alignment constraints. In order for this to work the
operating system must not correct unaligned data (for
instance, on the DEC Alpha one might need to say `uac p
sigbus' before running H5detect).
./src/H5private.h
Includes <signal.h> because it's needed by H5detect.c to
detect alignment constraints.
./src/H5Tconv.c
Added extra checks to all hardware conversion functions so
they align data when necessary before the conversion. This
slows down the conversions somewhat but they're still much
faster than the software conversions.
./test/dtypes.c
By setting a constant at the top of the source you can test
conversions where the data is aligned on various byte
boundaries.
By setting a constant at the top of the source you can
simulate architectures that have alignment constraints on
architectures that don't.
Changed typo SIZEOF_LDOUBLE to SIZEOF_LONG_DOUBLE in a few
places.
----------------------
./doc/html/Datatypes.html
./src/H5.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./src/H5detect.c
./test/chunk.c
./test/dtypes.c
./test/h5test.c
./test/mtime.c
./test/tattr.c
./test/th5s.c
./tools/h5dump.c
./tools/h5dumputil.c
./tools/h5import.c
./tools/h5ls.c
./tools/h5toh4.c
./tools/h5tools.c
Renamed the old H5T_NATIVE_CHAR type to H5T_NATIVE_SCHAR to
denote that it is always signed.
Added a new H5T_NATIVE_CHAR type which has the same range,
representation, and behavior as either H5T_NATIVE_SCHAR or
H5T_NATIVE_UCHAR depending on the compiler and its
command-line switches for the application source file which
references H5T_NATIVE_CHAR. If source files are compiled with
different switches then each source file will resolve
H5T_NATIVE_CHAR appropriately so it matches the C type `char'
in that source file.
NOTE: THERE ARE OTHER DOCUMENTATION FILES THAT I DIDN'T CHANGE
BECAUSE I CAN'T MODIFY THE SOURCE.
./test/extend.c
Swapped two lines to prevent diagnostic messages from messing
up the formatted output.
----------------------
./src/H5Tconv.c
With my poor eyesight I missed the definitions of SCHAR_MIN
and SCHAR_MAX in <limits.h> and used CHAR_MIN and CHAR_MAX
incorrectly. I changed all occurrences of the latter to the
former and the new hardware integer type conversions now work
on Irix.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5private.h
./src/H5.c
./test/h5test.c
Added a wrapper for HDsnprintf() that just calls sprintf() if
snprintf() isn't available.
./MANIFEST
Added Paul's new h5toh4 files.
----------------------
./src/H5.c
./src/H5A.c
./src/H5AC.c
./src/H5B.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gstab.c
./src/H5HG.c
./src/H5HL.c
./src/H5I.c
./src/H5Iprivate.h
./src/H5MF.c
./src/H5MM.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Smpio.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sselect.c
./src/H5T.c
./src/H5TB.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5V.c
./src/H5Z.c
./src/H5detect.c
./src/H5private.h
Most of these changes are because the `interface_initialize_g'
variable change from hbool_t to int. It's a one line change.
Changed the way the library is closed so we have more control
over the order the interfaces are shut down. Instead of
registering an atexit() function for every interface in some
haphazard order we just register one: H5_term_library() which
then calls the H5*_term_interface() functions in a
well-defined order.
If the library is closed and then reopened repeatedly by
calling H5close() and H5open() in a loop we only add one copy
of the library termination functions with atexit().
Termination is a two-step process in order to help detect
programming errors that would cause an infinite loop caused by
the termination of one interface waking up some other
previously terminated interface. The first step terminates
the interface and *marks it as unusable*. After all
interfaces are terminated then we mark them all as usable
again. The FUNC_ENTER() macro has been modified to return
failure or to dump core (depending on whether NDEBUG is
defined) if we try to call an interface while it's shutting
down.
./src/H5.c
The H5dont_atexit() function returns failure if it's called
more than once or if it's called too late. However, the error
stack is not automatically printed on failure because the
library might not be initialized yet
./test/chunk.c
./test/flush1.c
./test/flush2.c
./test/iopipe.c
./test/overhead.c
./test/ragged.c
Changed the extra cast for Win32 so we do floating point
division again -- it was just confusion about precedence and
associativity of casting and the C coercion rules. Removed
extra carriage returns inserted by broken operating system.
./src/H5Ffamily.c
Fixed an bug where H5F_fam_write() lowered the EOF marker for
one of the family members causing H5F_fam_read() to read
zeros.
./test/h5test.h [NEW]
./test/h5test.c [NEW]
./test/Makefile.in
./test/bittests.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
Support library for test files. This isn't done yet but
Katie's contractions are ~10 minutes apart so I figured I
better back this stuff up just in case I'm not here next
week...
Eventually all test files will understand HDF5_DRIVER to name
the low level file driver and parameters so we can easily test
various drivers. They will also understand HDF5_PREFIX to
prepend to the beginning of file names which is necessary for
testing ROMIO with various drivers. Also, the cleanup function
will know how to use the file name prefix and will understand
different file driver naming schemes like file families. I'm
not sure they'll understand the `gsf:' type prefixes yet.
Note, the external test is completely commented out because
I'm in the middle of modifying it. It will still compile and
run but it doesn't test anything at the moment.
----------------------
./src/H5.c
./src/H5Smpio.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpublic.h
./src/H5detect.c
./src/H5private.h
./src/H5public.h
./test/big.c
The `long long' type isn't quite as prevalent as we had hoped;
there is at least one system that defines `__int64' but not
`long long'. Therefore, I've temporarily changed all
occurrences of `long long' to `long_long' and then #define
that in H5private.h based on the existence of `long long' or
`__int64'. This gets rid of some #ifdef's in other parts of the code.
The semantics of the hdf5 types are:
*int8_t Exactly one byte
*int16_t At least two bytes. We favor 32-bit integers over
16-bit integers if the 16-bit integer is 4-bytes wide
(Cray)
*int32_t At least four bytes.
*int64_t At least eight bytes
long_long The widest integral integer type
The H5Smpio.c contains debugging code which is non-portable.
./tools/h5ls.c
Changed the order native types are detected so we favor the name `int'
over `short' or `long' if two of them are the same.
./config/conclude.in
Added a rule to make test programs depend on the hdf5 library. This
fixes a minor bug where changing H5detect.c and then running `make
test' caused H5Tinit.c to not be recompiled and therefore the test
files are not relinked.
----------------------
./INSTALL.parallel [NEW]
We're beginning to unify some of the parallel installation
steps. This file will contain general information for
installing the parallel library. It's not complete yet.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
Check for xdr_int() in libnsl required on Solaris when linking
with hdf4. It's found on the Irix system I tested which
complains that `-lnsl' didn't resolve any symbols. Oh well.
Fixed the order of searching for libdf and libmfhdf for hdf4
linking.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5Z.c
Check for compress() in libz in order to find older versions
of the library that will still work for hdf4. Added a
separate check for compress2() that hdf5 will use.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5R.c
./src/H5RA.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Sselect.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./test/bittests.c
./test/gheap.c
./test/hyperslab.c
./test/istore.c
./test/tmeta.c
./test/trefer.c
./test/tselect.c
./tools/h5debug.c
./tools/h5tols.c
Added checks for Posix.1g types like `int8_t'. If not defined
then H5private.h defines them. Changed all `int8' etc. to
`int8_t'.
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5I.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5T.c
./src/H5TB.c
./src/H5Z.c
Calling H5*_term_interface() resets interface_initialize_g to
FALSE so a subsequent call to H5open() (implied or explicit)
reinitializes global variables properly.
./src/H5private.h
./src/H5Oefl.c
./src/H5S.c
Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to
SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they
match the Posix.1 constants in <limits.h>.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5detect.c
Added 36 more integer hardware conversion functions to the
type conversion table for conversions to/from `long long' and
`unsigned long long'. The `long long' names will be changed
shortly to make them portable to Win32.
Changed H5T_init() to H5T_native_open() and added an
H5T_native_close() to open and close the predefined native
data types.
Increased the initial size of the type conversion table from
64 to 128 entries.
Reordered the 90 new integer conversion functions so the names
that are printed favor `int' over `short' or `long' when two
of them are the same.
./test/dtypes.c
Added hardware and software integer conversion tests for the
56 functions I added recently but not the additional 36
checked in this time. That will come next.
Call H5close() after each test so type conversion statistics
are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes
Added more debugging output for when things go wrong.
./src/H5private.h
Removed trailing carriage-returns inserted by broken operating
system ;-)
----------------------
./config/conclude.in
./test/Makefile.in
./tools/Makefile.in
The Makefile $TESTS variable has finally been split into
$TEST_PROGS and $TEST_SCRIPTS with the latter being the names
of shell scripts that need to be run with `/bin/sh'. Now we
don't have to copy each shell script before we run it. NOTE:
THIS CHANGE DOES NOT AFFECT THE PABLO MAKEFILE SINCE THAT FILE
IS A COPY OF A PREVIOUSLY GENERATED MAKEFILE.
./src/Makefile.in
Added H5Snone.c to the source list.
./src/H5G.c
Plugged a memory leak by emptying the object type "isa" table
when the library is closed.
./src/H5Tconv.c
./src/H5Tpkg.h
Added 48 new type functions to take advantage of hardware for
integer type conversions. These functions are not registered
in the conversion table yet because I haven't fully tested
them.
./src/H5Tpkg.h
Removed __unused__ qualifiers from prototypes.
----------------------
./MANIFEST
Added new Pablo files HDF5record_RT.h and ProcIDs.h
./acconfig.h
./configure [REGENERATED]
./configure.in
./src/H5.c
./src/H5Vprivate.h
./src/H5config.h.in [REGENERATED]
./src/H5private.h
./src/H5public.h
./test/big.c
Added more configuration stuff for the Win32 environment. Removed all
the #ifdef WIN32 from the source and replaced them with OS-independent
stuff. Specifics follow:
Check for non-Posix.1 `st_blocks' field in `struct stat' which is used
by the big file test to decide if the file system supports holes. If
the st_blocks field isn't present then we just skip the test.
Configure checks for <io.h> <sys/resource.h> <sys/time.h> and
<winsock.h> and defines HAVE_IO_H, HAVE_SYS_RESOURCE_H,
HAVE_SYS_TIME_H and HAVE_WINSOCK_H when they're found.
Configure checks whether both <sys/time.h> and <time.h> can be
included and defines SYS_TIME_WITH_TIME if so. Otherwise include only
<sys/time.h> or <time.h> even if both exist.
Configure checks sizeof(__int64) and defines SIZEOF___INT64 to the
result or to zero if __int64 isn't defined. The source uses `long
long' in preference to `__int64'.
Removed null WIN32 definition for `inline' since such a definition
already exists in H5config.h
Protected gettimeofday() calls in debugging code with
HAVE_GETTIMEOFDAY instead of WIN32.
./src/H5F.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fstdio.h
./src/H5P.c
./src/H5Tconv.c
./src/H5private.h
Removed #include of system files from library source files and
consolodated them into H5private.h where they're protected by various
configuration macros (most of them were duplicated there already
anyway).
./test/big.c
./test/chunk.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
./test/fillval.c
./test/flush1.c
./test/flush2.c
./test/iopipe.c
./test/links.c
./test/mount.c
./test/mtime.c
./test/overhead.c
./test/ragged.c
./test/shtype.c
./test/unlink.c
Protected system #include's with #ifdef's from H5config.h.
Undefined NDEBUG since some of the tests rely on assert() to check
return values.
Removed WIN32 definitions for __unused__ since this can be controlled
by the definition of HAVE_ATTRIBUTE in H5config.h
./test/testhdf5.h
Removed the CLEAN_CMD definition because we no longer use it.
Albert's cleanup() functions replaced it.
./test/fillval.c
Initialized auto hid_t variables to fix warnings in error recovery
code when data flow analysis is turned on in compilers.
./test/h5tools.c
Initialized an auto variable to fix a compiler warning.
./test/chunk.c
./test/ragged.c
The WIN32 had some unsigned variables changed to signed because the
compiler generates warnings when coercing unsigned to double(?). I
changed them back to unsigned because they really are unsigned
quantities. If this the change was just to shut up extraneous warnings
then perhaps a compiler flag can do the same; otherwise if the
compiler generates bad code then we should supply a patch file instead
messing up source code with bug work-arounds.
./src/H5detect.c
Protected system #include's with #ifdef's from H5config.h thereby
removing a WIN32.
If getpwuid() doesn't exist (HAVE_GETPWUID) then we assume that
`struct passwd' doesn't exist either (we don't really need it in that
case).
The H5T_NATIVE_LLONG and H5T_NATIVE_ULLONG are defined in terms of
`long long' or else `__int64' or else `long' depending on what's
available.
./src/H5Flow.c
./src/H5Ofill.c
Added __unused__ to some function arguments that aren't used when
assertions are turned off.
./src/H5V.c
Changed an auto variable name in some hand-inlined code to get rid of
a warning about the variable shadowing a previous auto.
Changes since 19980930
----------------------
./MANIFEST
./doc/html/H5.format.html
./src/H5D.c
./src/H5Dprivate.h
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5O.c
./src/H5Ofill.c [NEW]
./src/H5Oprivate.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/Makefile.in
Added fill values as documented in previous e-mails. They only
work for chunked datasets so far.
./src/H5E.c
./src/H5Epublic.h
./src/H5P.c
Changed H5E_TEMPLATE to H5E_PLIST.
./src/H5Omtime.c
./src/H5V.c
Fixed a typo in a comment.
./src/H5Tconv.c
Fixed a bug in compound type conversions that caused an
assertion to fail.
----------------------
./COPYING
Reformatted as text instead of C. Removed zlib crew from the
list of contributors since no zlib code is actually in the
hdf5 library.
./INSTALL
./INSTALL.ascired
./MANIFEST
Minor updates for Beta release including version number
change.
./INSTALL_MAINT
Added information about making a release.
./RELEASE
Updated function list based on public header files.
./bin/checkposix
Got rid of complaints about some obvious things.
./doc/html/H5.api.html
./doc/html/RM_H5F.html
./src/H5F.c
./src/H5Fpublic.h
./test/tfile.c
Changed H5Fget_create_template() and H5Fget_access_template()
to H5Fget_create_plist() and H5Fget_access_plist() since that
conforms better to lots of other names.
./doc/html/Datatypes.html
./doc/html/ExternalFiles.html
./doc/html/Files.html
./doc/html/H5.api.html
./doc/html/H5.sample_code.html
./doc/html/RM_H5F.html
./doc/html/RM_H5Front.html
Changed `template' to `property list', etc.
./doc/html/Ragged.html [NEW]
Documentation for ragged arrays.
./src/H5Iprivate.h
./src/H5Ipublic.h
./src/H5I.c
Changed the scope of some symbols to be more local.
./src/H5.c
./src/H5AC.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5I.c
./src/H5O.c
./src/H5Ocomp.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5P.c
./src/H5S.c
./src/H5Shyper.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5V.c
./src/H5Z.c
./src/H5private.h
Fixed some violations of our naming scheme by adding HD to the
beginning of all Posix functions.
----------------------
./MANIFEST
./src/H5R.c [NEW]
./src/H5Rprivate.h [NEW]
./src/H5Rpublic.h [NEW]
./src/Makefile.in
./src/hdf5.h
./test/ragged.c [NEW]
Preliminary support for 2d ragged arrays for Mark Miller and
Jim Reus. Not fully implemented yet. The test is not actually
part of `make test' because we still have some memory problems.
./src/H5E.c
./src/H5Epublic.h
Added H5E_RAGGED as a major error number.
./bin/release
Checks the MANIFEST file against `svf ls' on systems that have
it.
./bin/trace
Fixed a bug that caused arguments of type `void *x[]' to not
be handled.
./src/H5.c
Removed unused variables and changed a couple types to
fix compiler warnings.
Added tracing support for ragged array object ID's and arrays
of pointers.
./src/H5D.c
H5Dcreate() will complain if either of the property lists are
invalid (instead of using the default).
./src/H5D.c
./src/H5Dprivate.h
Split H5Dget_space() into an API and internal function so it
can be called from the new ragged array layer.
./src/H5Fistore.c
Fixed warnings about unsigned vs. signed comparisons.
./src/H5Flow.c
Fixed a warning about a variable being shadowed in the MPI-IO
stuff.
./src/H5Iprivate.h
./src/H5Ipublic.h
Added the H5_RAGGED atom group.
./src/H5Shyper.c
Fixed some freeing-free-memory errors that resulted when
certain arrays were freed but the pointers were left in the
data structures. I simply set the pointers to null after they
were freed.
./src/H5Sprivate.h
./src/H5Sselect.c
Split the H5Sselect_hyperslab() function into an API and a
private function so it could be called from the ragged array
layer.
Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to
get rid or compiler warnings.
./src/H5Tconv.c
Removed a misleading comment.
./test/bittests.c
Fixed a warning about a printf().
./test/cmpd_dset.c
Fixed warnings about unused variables because of test #11
being commented out.
./bin/trace
Shortened the right margin for the output to allow room for
the `);' at the end of the TRACE() macros.
----------------------
./doc/html/Datatypes.html
./doc/html/H5.format.html
./src/H5.c
./src/H5Odtype.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./test/dtypes.c
Changed the values of the H5T_str_t type in order to make a
distinction between C's null terminated strings and strings
which are not null terminated.
The string character set and padding method are saved to the
hdf5 file instead of using defaults.
Added conversion function from one fixed-length string type
to another.
./test/chunk.c
Fixed to work with new filter API
----------------------
./src/H5Fistore.c
./src/H5S.c
Fixed places where `herr_t' functions returned NULL for
failure: H5F_istore_get_addr() and printf(?!?) (probably
because a printf() was in the first column :-/ so I don't know
what function it really was that I fixed), and H5S_extent_copy().
./src/H5Fprivate.h
Added declarations for H5F_istore_get_addr() and
H5F_istore_allocate().
./src/H5S.c
./src/H5Sprivate.h
Split H5Sset_extent_simple() into H5S_set_extent_simple() and
replaced calls to the API function with calls to the internal
function.
Changed calls to H5Screate() to H5S_create() and H5Sclose() to
H5S_close().
./src/H5Shyper.c
./src/H5Spoint.c
Removed unused labels and variable.
./src/H5T.c
./src/H5Tconv.c
Changed calls to H5Tfind() to H5T_find().
./src/H5TB.c
Split function return type onto a separate line for five
functions and added API tracing calls.
----------------------
./bin/trace
./src/H5.c
Added tracing support for H5S_seloper_t and H5S_class_t.
./src/H5Sselect.c
./src/H5S.c
Added tracing statements that weren't inserted previously
because of formatting problems.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
./test/cmpd_dset.c
Added H5Tinsert_array() for inserting an array member into a
compound data type. Added support to the struct conversion
function for member arrays. The index permutation is not
supported yet in the conversion (source and destination must
have the same permutations).
----------------------
./bin/trace
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5P.c
./src/H5Pprivate.h
./src/H5S.c
./src/H5T.c
Output-only arguments have their addresses printed during
tracing and added symbolic output for the H5F_driver_t
arguments. That's another reason that we should be careful to
add `/*out*/' after arguments that are output-only and
`/*in,out*/' after arguments that are used for both input and
output values.
No internal function calls H5Pget_class() anymore.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
Added H5Tget_overflow() and H5Tset_overflow() so the
application can query or set a function that will be called
whenever an overflow occurs. Implemented as documented in
previous e-mail except the overflow handler gets two buffers:
one that contains the source value and one to receive the
optional destination value.
./test/dtypes.c
Tests overflow handler.
./src/H5.c
We have to declare fdopen() because I'm getting errors when
compiling on Irix64 even though we include <stdio.h> as
documented in the fdopen() man page.
----------------------
./src/H5T.c
Prints statistics for no-op conversions also.
For now, hardware floating point conversions may or may not
raise SIGFPE depending on the hardware, operating system,
etc. Software conversions never raise SIGFPE and use +Inf or
-Inf for overflow.
./test/dtypes.c
Catches SIGFPE and causes the test to be skipped. Better test
for NaN.
./config/irix5.3
Removed the -U_POSIX_SOURCE because it was removed from the
main makefiles.
./bin/trace
./src/H5S.c
Fixed a typo that prevented tracing info from being added to
new API functions.
----------------------
./MANIFEST
Added new files from testpar directory.
./config/commence.in
Removed -D_POSIX_SOURCE because hdf5 uses a couple of
non-Posix things when certain debugging flags are switched on.
----------------------
./src/H5Tbit.c
./src/H5Tpkg.h
Fixed a bug in H5T_bit_copy(). Added H5T_bit_get_d() and
H5T_bit_set_d() which treat portions of a bit vector as an
unsigned integer. Added H5T_bit_inc() that increments part of
a bit vector and returns an indication of overflow.
./src/H5Tconv.c
./src/H5Tpkg.h
./test/dtypes.c
Added a slow general floating point conversion which works so
far on Intel, MIPS, and DEC but the test is turned off because
a cast from double to float will cause a SIGFPE on some
systems if an overflow occurs.
Added fast hardware conversions between native floating point
types. This function is also subject to the SIGFPE problem.
./src/H5detect.c
Removed the exponent bias adjustment when the significand
isn't normalized. This is now handled in the conversion
functions instead.
./src/H5T.c
Register new conversion functions.
Plugged a memory leak in the library termination code.
./RELEASE
Added a list of major changes since the first alpha.
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5AC.c
./src/H5D.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5G.c
./src/H5Gprivate.h
./src/H5HG.c
./src/H5O.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
Fixed various compiler warnings on Irix64.
./src/H5MM.c
Added PABLO_MASK to this file.
./test/chunk.c
Removed a warning about memcpy().
./INSTALL_MAINT
./README
./RELEASE
Partially updated for second alpha, but haven't updated
version numbers yet.
./src/H5.c
./src/H5A.c
./src/H5AC.c
./src/H5B.c
./src/H5D.c
./src/H5F.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5I.c
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5T.c
./src/H5Tconv.c
./src/H5detect.c
./test/hyperslab.c
./test/istore.c
Changed memory allocation functions so they fail instead of
dumping core. The `x' was removed from the name to remind us
of that: H5MM_xmalloc() -> H5MM_malloc(), etc.
H5MM_calloc() takes one argument like H5MM_malloc() instead of
two like calloc() because we almost always called it with `1'
for one of the arguments anyway. The only difference between
the two functions is that H5MM_calloc() returns memory which
is initialized to zero.
./src/H5Gent.c
./src/H5Gprivate.h
Removed H5G_ent_calloc() since it wasn't used.
./src/H5Fistore.c
Fixed a bug found by Albert. Thanks, Albert! This fix
combined with the changes to memory allocation prevent the
library from failing an assertion if the application uses an
unreasonable size for chunks (like Alberts 10000x10000x4).
./src/H5MF.c
./src/H5MFprivate.h
Changed H5MF_free() to H5MF_xfree() since calling it with an
undefined address is allowed.
----------------------
./html/Datatypes.html
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./src/H5detect.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/external.c
./test/tattr.c
./test/th5s.c
Organized the predefined data types.
./html/H5.intro.html
NO MODIFICATIONS! This file is a mess (obviously generated
from something else) so I skipped updating it!
./src/h5ls.c
./test/dsets.c
./test/tattr.c
./test/th5s.c
Added extra argument to H5Sget_dims() calls per Albert's last
update.
----------------------
./html/tracing.html NEW
This entire update is to make it possible for the library to
print the name, arguments, and return value of every API call
without requiring any extra work from developers or app
programmers. This file describes how this all works.
./configure.in
Added the `--enable-tracing' switch. If you use it then the
library will include code to print API function names,
argument names and values, and function return values.
However, you must then turn on the tracing by setting the
HDF5_TRACE environment variable to a file descriptor number.
The default is `--disable-tracing' since enabling it causes a
slight increase in library size and a slowdown resulting from
an extra function call for each API function call (I couldn't
even measure the slowdown :-)
./bin/trace NEW
A perl script that synchronizes the H5TRACE() macro calls in
the *.c files with the function return type and formal
argument names and types. If you use GNU make and gcc then
this will be done automatically, otherwise just invoke this
script with the names of one or more .c files. You could do
it by hand to, but encoding argument types is a little tricky
at first.
./config/commence.in
Added the $(TRACE) macro, which defaults to the no-op.
Added -D_POSIX_SOURCE to the compiler command line.
./src/Makefile.in
Override the default for $(TRACE).
./config/depend.in
Automatically calls $(TRACE) to synchronize the H5TRACE()
macros in any source file that changed. As with makefile
dependencies, one way to force synchronization of all files is
to remove the `.depend' file.
./MANIFEST
Added new files.
./src/H5Eprivate.h
Modified HRETURN_ERROR() and HRETURN() for tracing.
./src/H5.c
./src/H5private.h
This is where the real tracing work really happens, in
H5_trace().
./src/H5A.c
./src/H5D.c
./src/H5G.c
./src/H5P.c
./src/H5S.c
./src/H5Z.c
Added H5TRACE() calls to all API functions. You don't really
need these changes if you don't want to merge your stuff
because they can be generated automatically by going to the
hdf5/src directory and saying ../bin/trace *.c
./src/H5T.c
Added H5TRACE() calls. Other stuff below.
./src/H5E.c
./src/H5Epublic.h
Added H5TRACE() calls. Created a type H5E_auto_t for the
`func' argument of H5Eset_auto() and H5Eget_auto() to make
those arguments easier to parse for tracing. It should also
make it clearer for users that don't know how to read
complicated ANSI data types.
./src/H5F.c
Added H5TRACE() calls. Changed a couple `uintn' argument
types in API functions to `unsigned int' since `uintn' part of
the API. Changed a few "can't" and "cant" error messages to
"unable to".
./src/H5Ipublic.h
Removed H5_DIRECTORY from the H5I_group_t enum. It wasn't
used anywhere.
./src/H5Tconv.c
Removed an unused label.
./src/H5Fistore.c
./src/H5Oattr.c
./src/H5Odtype.c
./src/H5T.c
./test/dsets.c
./test/dtypes.c
Fixed a warning about a variable possibly used before it's
initialized. Added __unused__ to turn off some unused
argument warnings that pop up when debugging is turned off and
optimizations are turned on.
----------------------
./src/H5Tbit.c
./MANIFEST
./test/Makefile.in
./test/bittests.c NEW
Finished the bit vector operations and added test cases.
./src/H5Tconv.c
./test/dtypes.c
Finished integer->integer general conversion and added test
cases. Overflows and underflows are handled by substituting
the closest possible value. Examples:
(unsigned)0xffff -> (unsigned) 0xff
( signed)0xffff -> (unsigned)0x0000
(unsigned)0xffff -> ( signed)0x7fff
( signed)0x7fff -> ( signed) 0x7f
( signed)0xbfff -> ( signed) 0xbf
( signed)0x8000 -> ( signed) 0x80
./src/H5private.h
Added definitions for MIN and MAX that take 3 or 4 arguments:
MIN3(), MIN4(), MAX3(), MAX4(). Also added MIN2() and MAX2()
as aliases for MIN() and MAX().
./test/tattr.c
Removed some redundant `&' operators.
./configure.in
./src/H5config.h.in [regenerated]
./src/H5.c
Fixed warnings on DEC where long double is the same as
double.
----------------------
THIS CHECKIN IS FOR QUINCEY -- NOT EVERYTHING WORKS (but it compiles)
MOST OF THE CHANGES ARE FOR BETTER TYPE CONVERSION IN THE NEXT ALPHA
./MANIFEST
./src/H5Tbit.c NEW
./src/Makefile.in
Bit vector operations (not done yet)
./configure.in
Added -lm to the library list, needed by bit-vector operations
and conversion functions.
Removed vestiges of PARALLEL_SRC no longer used by the
makefiles. Albert came up with a better way (that actually
works :-)
./src/H5D.c
No code changes. Split a couple of long lines, refilled a
couple multi-line comments.
./src/H5T.c
./src/H5Tpublic.h
Fixed a bug reported by Jim Reus regarding conversion of
compound data types whose members require conversions which
are satisfied by as-yet unregistered soft conversion
functions.
Added H5T_IEEE architecture, but the funny-looking integer
types will be changed to H5T_BE_ and H5T_LE_ architectures
with the type names changed to match the H5T_NATIVE_ integers.
Added an H5Tconvert() but it hasn't been documented or tested
yet.
./src/H5Tconv.c
./src/H5Tpkg.h
Registered conversion functions integer->integer (a general
case) and integer->float (for a specific case). The
integer->integer conversion depends on the bitvector
operations which aren't finished yet and the int->float
conversion hasn't been retested since it was borrowed from
AIO. Don't look at them yet, they're ugly :-)
./src/H5detect.c
Fixed a typo which caused the msb_pad field of an atomic type
to not be initialized.
./test/dtypes.c
Added a test for number conversions but it's commented out
until the conversion stuff is truly working.
./src/H5D.c
./src/H5Tconv.c
./src/H5detect.c
Updated to work with new internal H5T functions. Fixed some
data type memory leaks during error recovery.
./src/H5Dprivate.h
Added H5D_typeof() similar to H5D_entof() that returns a
pointer directly to the dataset's type. This is used by
H5Tcopy() when invoked on a dataset (see below).
./src/H5Epublic.h
Fixed typos in H5E_BEGIN_TRY and H5E_END_TRY macros.
./src/H5F.c
Closing a file with objects still open reports the file name
in the warning message. Removed unnecessary invalidation of
shared data types.
./src/H5Gent.c
./src/H5Gpkg.h
./src/H5Gprivate.h
Added `const' to some arguments.
./src/H5O.c
./src/H5Oprivate.h
./src/H5Oshared.c
An object header message can now be a pointer to a message in
some other object header. The pointer is to the first message
of the appropriate type in the other object header and hard
link counts are maintained automatically to prevent dangling
pointers. The old global heap method of message sharing is
also supported although nothing actually uses it.
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshare.c
./src/H5Ostab.c
Changed the data type for the shared message info struct to
H5O_shared_t and added an extra initializer to the class
methods struct for the set_share method.
./src/H5Odtype.c
Added the ability to share data type messages by pointing to
other object headers.
./src/H5T.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
Added named data types and changed the functionality of some
API functions as follows:
* The term `read-only' means that a type handle cannot be
modified with functions like H5Tset_*() or H5Tinsert().
* The term `immutable' means the same as `read-only' with the
added restriction that H5Tclose() cannot be called for the
type. A transient type is made immutable by calling
H5Tlock().
* Handles to named types are always read-only.
* Handles to predefined types are immutable.
* A transient type can be converted to a named type by calling
H5Tcommit(). This function will fail if the type is already
named or is immutable.
* The API function H5Tcommitted() returns an indication of
whether a data type has been commited (or is named). If
H5Tcommitted() returns TRUE for a data type obtained by
calling H5Dget_type() on a dataset, then the dataset is
using a shared data type.
* H5Topen() returns a handle to a named type.
* H5Tcopy() always returns a handle to a modifiable transient
type even when invoked on a named type. Also, when invoked
on a dataset it returns a modifiable transient type which is
a copy of the dataset's data type.
* Using a named data type in the call to H5Dcreate() causes
the dataset object header to point to the named data type,
but using a transient type causes the type to be copied into
the dataset's object header.
* The data type returned from H5Dget_type() is a named data
type or a read-only transient data type depending on whether
the dataset points to a named data type. The old behavior,
to return a modifiable transient type, is accomplished by
overloading H5Tcopy() to operate on datasets (see above).
* H5Tshare(), H5Tunshare(), and H5Tis_shared() have been
removed from the API.
The following features were *not* implemented because they
need more discussion:
* A named data type can be opened by applying H5Topen() to a
dataset in which case the data type is the data type of the
dataset (or the data type to which the dataset points if the
dataset has a shared data type).
* A named data type can have attributes like groups or
datasets.
* The members of a compound data type can point to named data
types.
./src/h5ls.c
Reports `Data type' for named data type objects in the file.
./src/H5F.c
./src/H5G.c
./src/H5O.c
./src/H5Osdspace.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Z.c
./test/big.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/istore.c
Now that I have a home-grown version of Purify I fixed all the
leaks in all the test files.
----------------------
./html/Compression.html [NEW]
./html/Datasets.html
./html/H5.format.html
./html/H5.user.html
Documented compression. A couple of the H5P functions aren't
quite implemented yet but they're coming soon...
./src/H5Dprivate.h
./src/H5E.c
./src/H5Epublic.h
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocomp.c [NEW]
./src/H5Oprivate.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5Sprivate.h
./src/H5Ssimp.c
./src/H5Z.c [NEW]
./src/H5Zprivate.h [NEW]
./src/H5Zpublic.h [NEW]
./src/Makefile.in
./src/hdf5.h
./test/dsets.c
./test/istore.c
Compression is now mostly working. Don't try to open a
compressed dataset though because the compression message
won't be read.
./html/Datatypes.html
./html/H5.api.html
./src/H5.c
./src/H5private.h
./src/H5D.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
Added timing support. When compiled with H5T_DEBUG defined
the library will print conversion bandwidths when the library
closes. The H5Tregister functions take a string as the first
argument so the statistics output is meaningful.
./MANIFEST
Added new files.
./configure.in
./src/H5config.h.in
Check for getrusage(). Check for compress2() in libz.a and
the zlib.h header file. Added `z' to the debug list.
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
./src/debug.c
Cleaned up some indentation and added support to print istore
B-trees. From the debugger, give the B-tree address and the
dimensionality from the layout message of the object header.
./src/h5ls.c
The oid is printed as w:x:y:z where w and x are the file ID
and y and z are the OID within the file. You can give z or
y*2^32+z as an argument to the debugger to print the object
header for the object.
./src/H5AC.c
Cleaned up statistics and made them match those reported by
H5T and H5Z.
./src/H5MM.c
./src/H5MMprivate.h
./src/H5Fistore.c
Finally got rid of a couple of long-standing const cast
warnings.
----------------------
./src/H5B.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sprivate.h
./src/H5Spublic.h
./src/H5Ssimp.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5private.h
./src/H5public.h
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tfile.c
./test/th5s.c
Anything having to do with the size of a dataset now uses the
types `hsize_t' and `hssize_t' which must be the same size and
at least as large as `size_t'. This isn't fully tested yet,
so hsize_t and hssize_t are defined as size_t and ssize_t in
H5public.h. Setting them to larger values will trip up gcc
versions less than 2.8.1 on x86 platforms.
Documented unused function formals with `__unused__' before
the formal name. This also has the effect of supressing
warning messages for gcc since it's defined to be
`__attribute__((unused))' in the H5private.h file.
./src/debug.c
./src/h5ls.c
If the file name contains a `%' then the file is opened as a
file family with H5P_DEFAULT for the file member access
property list.
./src/h5ls.c
The group name is optional, defaulting to `/'.
./src/hdf5.h
Added some missing public header files.
----------------------
./configure.in
Moved setting of compiler warning switches earlier in the file.
Turned on more warning switches to gcc.
./config/linux
Prints a warning if the gcc version is less than 2.8.1 since
that version has problems with register allocation for `long
long'.
./html/Datatypes.html
Documented sharing of data types between datasets.
./src/H5G.c
./src/H5Gpublic.h
Implemented H5Gmove(), H5Glink() and H5Gunlink() for hard
links. Still have soft links to do.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5D.c
./src/H5E.c
./src/H5Eprivate.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5HLprivate.h
./src/H5I.c
./src/H5Iprivate.h
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5Ssimp.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5detect.c
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tstab.c
Fixed comparisons between signed and unsigned values. Fixed
warnings about unused function arguments.
----------------------
./MANIFEST
./src/Makefile.in
./test/Makefile.in
Added new files.
./config/linux
./src/H5HL.c
./src/H5HLprivate.h
./src/H5MF.c
./src/H5MFprivate.h
Added `-DH5HL_DEBUG -DH5MF_DEBUG' to the debug list.
./html/H5.format.html
Updated shared object message information.
./src/H5D.c
Datasets can now share data types.
./src/H5F.c
Updated a comment that referred to H5ACC_WRITE.
./src/H5HG.c
./src/H5HGprivate.h
Moved a few things around. Made debugging better so you can
now give a collection address to ./src/debug and it shows some
useful stuff.
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c [NEW]
./src/H5Ostab.c
Supports shared messages.
./src/H5T.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
The H5Tshare() function allows the user to give the library
hints about how a data type will be used.
./test/shtype.c
Tests the H5Tshare() function.
./test/gheap.c
Tests the global heap.
./configure.in
./config/BlankForm [NEW]
./config/alpha-dec
./config/freebsd2.2.1
./config/hpux10.20
./config/irix6.2
./config/irix64
./config/linux
./config/powerpc-ibm-aix4.2.1.0
./config/rs6000-ibm-aix4.1.4.0
./config/solaris2.5
Cleaned up lots of configuration stuff and made the site
configuration files lots easier and more uniform. To make a
new file grab the BlankForm and modify it.
By default, debugging is turned on for most packages. Within
a package one can use `#ifdef H5AC_DEBUG' to wrap debugging
code. Other options are:
--enable-debug
--enable-debug=yes
The default, most but not all packages.
--disable-debug
--enable-debug=no
--enable-debug=none
The symbol NDEBUG is defined and none of the package
debug symbols.
--enable-debug=all
Debugging is turned on for all packages. This might
produce lots of output.
--enable-debug=g,d
Debugging is turned on for H5G and H5D.
A compile mode is also now supported
--enable-production
--enable-production=yes
The library is compiled with optimizations turned on.
The compiler flags are augmented by adding PROD_CFLAGS
and PROD_CPPFLAGS which are defined in the site config
file.
--disable-production
--enable-production=no
The default. The library is compiled for development
by including DEBUG_CFLAGS and DEBUG_CPPFLAGS defined in
the site config file. This is usually just `-g'.
--enable-production=profile
--enable-production=pg
Builds a library for profiling by including the flags
from PROFILE_CFLAGS and PROFILE_CPPFLAGS defined in the
site config file. This is usullay just `-pg' but it
could include optimization flags as well depending on
the type of profile one wants.
In summary, configure by saying `./configure' and you'll get a
development version of the library. Configure by saying
`./configure --enable-production --disable-debug' and you'll
get a production version with no debugging code.
----------------------
./src/H5D.c
./src/H5T.c
./src/H5Tprivate.h
Fixed a bug found by Kevin Powell regarding preservation of
existing data during a read or write when the source and
destination data types are the same. Thanks Kevin!
Fixed a couple warnings on Irix64.
./src/H5D.c
./src/H5Dprivate.h
./src/H5P.c
./src/H5Ppublic.c
./src/H5Tconv.c
./src/H5Tpublic.h
./test/cmpd_dset.c
The application can now turn on/off the part of the I/O
pipeline that deals with preservation of initialized data.
The default is off since this will be the usual case and
turning it on slows down the pipe. Use H5Pset_preserve() and
H5Pget_preserve().
./src/H5Fistore.c
Added an optimization for reading/writing a single chunk of
chunked storage.
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Ostab.c
Fixed warnings reported by marek@iiasa.ac.at. Thanks Marek.
./src/H5Odtype.c
Fixed a failing assert() wrt reading compound types (not
present in hdf5-1.0.0a).
----------------------
./html/Files.html
./src/H5C.c
./src/H5Cpublic.h
./src/H5Ffamily.c
./src/H5Fprivate.h
./src/H5Fsplit.c
./test/tstab.c
Added file-access property functions.
The split driver takes file extensions as properties.
./src/H5A.c
./src/H5Aprivate.h
Added some comments. Changed H5A_destroy() to call the free
function on all the atoms that are destroyed. This fixes a bug
where the file boot block isn't updated if the file isn't
closed before calling exit().
Removed extra `*' and `&' from some places.
./src/H5AC.c
Replaced an occurrence of NO_ADDR with NULL.
./src/H5Odtype.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
Data types of compound members are pointers.
./H5private.h
Some changes to make lseek64() work on Irix 5.3 where header
files don't realize that `long long' works.
./acconfig.h
./configure.in
Removed definition for PHDF5 since it looks like everyone is
useing HAVE_PARALLEL now.
./configure.in
./src/H5detec.c
Added checks for gethostname() and getpwuid().
while he is visiting LLNL. I changed the default creation template
offset and length to 4. Will fix the problem later.
Changes since 19980205
----------------------
./src/H5H.c
./src/H5Hprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Odspace.c
./src/H5Ostab.c
./src/debug.c
./html/H5.format.html
Added an extra 4-byte field after the heap magic number for
alignment on the DEC alpha. Changed object header message
alignment to 8-bytes.
./src/H5F.c
./src/H5Farray.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5Gnode.c
./src/H5O.c
./src/H5Odtype.c
./src/H5P.c
./src/H5Pprivate.h
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5detect.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/hyperslab.c
./test/istore.c
./test/th5p.c
./test/theap.c
Fixed a few irix64 warnings regarding size_t vs. int,
variables set but not used, printf formats
./config/irix64
Added `-woff 1196' to get rid of errors about __vfork() being
implicitly defined in a system header file.
./src/H5B.c
Fixed a stack alignment problem.
----------------------
./config/freebds2.2.1
./config/irix64
./config/linux
Added -DH5T_DEBUG to the debugging flags. Also changed `true'
to `:' for the Irix64 ranlib program. This turns on printing
of data type conversion statistics when the program exits.
./html/Datatypes.html
Fixed documentation for data conversion functions and updated
examples.
./src/H5D.c
The I/O pipeline updates data type conversion statistics.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
Cleaned up data type conversion registration interface.
----------------------
./src/H5D.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
./test/cmpd_dset.c
Added support to turn background buffer on/off to help speed
up conversions. Currently, every type of conversion turns it
off except compound-->compound conversions which always turn
it on. In the future the compound-->compound conversions
might be more frugal.
----------------------
./MANIFEST
Added new files.
./src/H5D.c
Added support for partial datatype I/O which is needed when
merging struct members between file and disk. This isn't the
efficient version because the merge requires an extra gather
(step 1b in my pipeline diagram) that isn't turned off when it
isn't needed.
./src/H5T.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
Conversion functions take an extra argument which is a pointer
to a blob of private data that can be used by the conversion
function to save anything that's expensive to compute and
is constant for a particular conversion path.
./src/H5Tconv.c
Compound data type conversion is beginning to work! We can
handle conversions between compound types that have members
which are not arrays. It also supports partial conversion so
we can omit certain members of the source and not clobber
extra members in the destination.
./test/Makefile.in
./test/cmpd_dset.c [NEW]
Added a test case that demonstrates how to use compound data
types in a dataset. The output doesn't match the output of
the other test cases yet, the the entire example is more
readable and written entirely with the API.
----------------------
./src/H5.c
./src/H5B.c
./src/H5Bprivate.h
Changed `new' to something else in 6 places for Fabio.
./src/H5T.c
./src/H5Tconv.c
Beginning to work on compound data type conversion. Don't look
yet :-)
----------------------
./src/*.h
Fixed indentation where indent(1) screwed up. This isn't by
any means the final say, but it's better than it was.
./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5M.c
./src/H5P.c
./src/H5T.c
./src/H5Tconv.c
./src/debug.c
./test/dtypes.c
./test/istore.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
Removed some atom functions from the API and made them
library-scope. Also changed some names by removing the
redundant `atom' from the name and by adding a `_' after the
`H5A'.
