Description:
- Added class DSetAccPropList for the dataset access property list.
- Added wrapper for H5Dget_access_plist to class DataSet
// Gets the access property list of this dataset.
DSetAccPropList getAccessPlist() const;
- Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class
DSetAccPropList
// Sets the raw data chunk cache parameters.
void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0)
// Retrieves the raw data chunk cache parameters.
void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0)
- Added two more arguments to H5Location::createDataSet:
const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT
- Added one more argument to H5Location::openDataSet:
const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
Platforms tested:
Linux/64 (jelly)
Linux/32 (jam)
Darwin (osx1010test)
Description:
- Removed two inadvertently-added Group constructors in the header file.
There was no implementation.
- Removed deprecated H5Location and H5Object constructors that take an
existing ID.
- Miscellaneous improvements in comments, including updating URLs.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
Removed obsolet macros from C++ API:
H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
until further checking is done.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Jelly
Description:
Revised class brief description and other comments for up-to-date info.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Description:
Removed deprecated functions in previous releases due to missing const.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Description:
When copy constructor or constructor that takes an existing id is invoked,
the C ref counter stays the same but there is an extra C++ object which
later is destroyed and may cause the HDF5 id to be closed prematurely. The
C++ library needs to increment the ref counter in these situations, so that
the C library will not close the id when it is still being referenced.
However, the incrementing of ref count left some objects opened at the end
of the program, perhaps, due to compiler's optimization on cons/destructors. The constructor, that takes an existing id, needs to increment the counter
but it seems that the matching destructor wasn't invoked. The workaround
is to have a function for each class that has "id" that only sets the id
and not increment the ref count for the library to use in these situations.
These functions are "friend" and not public.
The friend functions are:
void f_Attribute_setId(Attribute *, hid_t)
void f_DataSet_setId(DataSet *, hid_t)
void f_DataSpace_setId(DataSpace *, hid_t)
void f_DataType_setId(DataType *, hid_t)
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam gnu and Intel 15.0)
SunOS 5.11 (emu)
Put back overloaded functions for backward compatibility:
- were replaced by better prototyped versions, such as Attribute::getName.
- were modified to add const to constant arguments.
Added notes for future removal in documentation.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
- Added a lot of documentation to classes for Reference Manual.
- Fixed some format inconsistencies
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)/PGI compilers
Description:
Changed header guards from single underscore to double underscore.
Platforms tested:
Linux/32 2.6 (jam) - very minor
Linux/64 2.6 (koala)/PGI compilers
Description:
- The failure in daily test was caused by missing initialization of member
"id" in a few constructors. This is now fixed.
- Added two overloaded H5Location::setComment
- Improved some error reporting in H5Location
- Improved error reporting in tests
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/64 2.6 (koala)/PGI compilers
Description:
- Improved the changes in revisions r22836 and r23438, mainly on the
wrappers of reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
Description:
- Completed the changes in revisions r22836 and r23438 with improvement
on wrappers such as reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
Description:
Fixed miscellaneous inconsistencies and typos, which also took
care of the failure in Packet Table test on daily test today.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
Mac Lion (duck)
Description:
In this bug, H5File doesn't have the ability to create attribute. The
following changes will provide that functionality and several others that
were also missing:
- Added an abstract class H5Location in between IdComponent and H5Object.
- New class structure of IdComponent, H5Location, H5Object, H5File
IdComponent
|
H5Location
/ \
H5Object H5File
- Wrappers in H5Object were moved to H5Location because the related C
functions take either file, group, dataset, or named datatype ID.
- Added wrapper for H5Rget_obj_type2
- Added tests for file attributes and H5Rget_obj_type2 wrapper
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
SunOS 5.10 (linew)
Description:
- Revised DataSet::write to pass in correct string buffer
- Added member function DataSet::getInMemDataSize() to simplify
getting the dataset's data size in memory.
- Added private functions for reading fixed- and variable-length
string data: p_read_fixed_len and p_read_variable_len.
- Added tests to write/read array of strings to datasets.
Platforms tested:
Linux/32 2.6 (jam)
FreeBSD/64 6.3 (liberty)
SunOS 5.10 (linew)
Added missing wrappers for H5Rdereference.
Also, for these wrappers, improved exception handlings to report specific
overloaded functions, where failure occurs. Will do the same for more
functions later...
Platforms tested:
Linux 2.6 (kagiso)
SunOS 5.10 (linew)
FreeBSD (duty)
Description:
Changed all subclasses' setId to protected p_setId and put back setId
in IdComponent. p_setId is used in the library where the id provided
by a C API passed on to user's application in the form of a C++ API
object, which will be destroyed properly, and so p_setId does not
call incRefCount. On the other hand, the public version setId is
used by other applications, in which the id passed to setId needs
to be closed properly by the application, so setId must call incRefCount
for the new object to prevent prematurely closing of the id.
Platforms tested:
Linux 2.6 (kagiso)
SunOS 5.10 (linew)
FreeBSD (duty)
Description:
The class hierarchy was revised to address the problem reported in
bugzilla #1068. Classes AbstractDS and Attribute are moved out of
H5Object. Class Attribute now multiply inherits from IdComponent and
AbstractDs and class DataSet from H5Object and AbstractDs.
In addition, data member IdComponent::id was moved into subclasses:
Attribute, DataSet, DataSpace, DataType, H5File, Group, and PropList.
Platforms tested:
SunOS 5.10 (linew)
Linux 2.6 (kagiso)
FreeBSD (duty)
Add H5Rget_obj_type() to the API versioning and switch internal
routines to use H5Rget_obj_type2()
Misc. other code cleanups, etc.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 2.10 (linew)
Mac OS X/32 10.4.10 (amazon)
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
Description:
Changed to alias string instead of std, i.e. H5std_string instead
of H5std, because the old way wasn't working when std didn't exist.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't
able to test before.
Description:
Added alias H5_std so either the global or std namespace can be
used, depending on H5_NO_STD.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
Description:
There was a workaround for predefined types, in the C++ library,
implemented when the C++ library was handling the reference
counting of the object ids on its own. Currently, the C++ library
is using the available APIs from the C library for that purpose,
and there were bugs reported involving that part of the C++ library.
So, I decided to remove the workaround completely.
Also, improved the use of std members.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
Linux 2.4 w/PGI (colonelk)
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Description:
Added wrapper for H5Iget_type.
Added try/catch to many APIs that call private functions so that more
specific information can be provided at failure.
Added IdComponent::inMemFunc to help providing specific info.
Added const to parameters of several functions that missed that.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
IRIX64 with -n32 (modi4)
HPUX 11.00 (kelgia)
Description:
Added the following to the C++ library
+ overloaded functions:
string CommonFG::getObjnameByIdx(hsize_t idx)
H5T_order_t AtomType::getOrder()
+ wrappers for H5*close
+ wrappers for H5Arename, H5Aget_storage_size, and H5Dget_storage_size
Platforms tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol)
Description:
Updated various function headers for the RM as reviewing progresses.
Rearranged functions in header files for more sensible look of the RM.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Description:
Removed private functions p_close, that were left over from the
removal of the reference counting mechanism.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
release_docs/RELEASE will be updated soon.
Add more C++ wrapper and documentation - incrementally check-in
Description
Added another overloaded constructor to StrType.
Added doxygen documentation to H5IdComponent.cpp.
Corrected some comments.
This is an incremental check-in to preserve the code, corresponding
tests will follow in a few weeks.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add C++ wrappers - incrementally check-in
Description
Added wrapper for these C APIs:
H5Rcreate
H5Rget_obj_type
H5Rget_region
This is an incremental check-in to preserve the code, corresponding
tests will follow in a few weeks.
Platforms:
Linux 2.4 (eirene)
I'm checking the code out and test on arabica too.
Misc. update:
Add C++ wrappers - incrementally check-in
Description
Added wrapper for these C APIs:
H5Dget_offset
H5Dget_space_status
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Bug fix and minor code enhancement
Description:
Missing methods to read/write C++ String for an attribute and
a dataset.
Solution:
Added overloaded functions read and write to H5::Attribute and
H5::DataSet.
Also, added another constructor StrType so the need to separately
set the length of the string type can be eliminated. It's minor
but convenient.
Made some minor changes to make error messages more readable.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
IRIX 6.5.11 (modi4)
HPUX 11.00 (kelgia)
Purpose:
use H5_DLLCPP to replacer __DLLCPP__ for c++ interfaces.
Description:
Solution:
Platforms tested:
linux 2.2.18smp, IRIX64, solaris 2.7, windows 2000
New Feature - per library change
Description:
Added new member function DataSet::fillMemBuf for the new
C API H5Dfill. Quincey's description of H5Dfill is as followed:
Added new H5Dfill() routine to fill the elements in a selection for a
memory buffer with a fill value. This is a user API wrapper around some
internal routines which were needed for the fill-value modifications
from Raymond as well as Pedro's code for reducing the size of a chunked
dataset.
Platforms:
SunOS 5.7 (arabica)
Linux 6.2 (eirene)
Purpose:
Adding support for dll
Description:
Added __DLLCPP__ to all public classes and templates.
Added #include "H5Include.h" to H5RefCounter.cpp because of the
use of DLLCPP in .h file and it needs the following chain:
H5Include.h/hdf5.h/H5public.h/H5api_adpt.h
Added #pragma warning(disable: 4251) to H5Exception.h to eliminate
this warning on private data members of type 'string.' This
occurs because 'string' is not yet instantiated at compilation
time; however, since the class is exported, the warning is
harmless.
Changed this member function's parameter to be passed as reference.
from:
void CompType::insertMember( const string name,...
to:
void CompType::insertMember( const string& name,...
Platforms tested:
Linux 6.2 (eirene)
Windows 2000
Feasibility improvement
Description:
- Some member functions in class Exception can be called without
an Exception instance exits, but because they are not static, they
cannot.
- Many exception throwings don't provide any information to callers.
Solution:
- Add 'static' to several member functions in class Exception.
- Added <class name::function name> to some exceptions thrown
in H5File.cpp and H5FcreatProp.cpp. I'm trying this for users'
comments. More information may be added later and to all
exceptions.
- Changed the comment line for emacs editor to:
// C++ informative line for the emacs editor: -*- C++ -*-
because... I'd rather not say that the code "may look like C" :-)
Platforms tested:
Linux (gcc version egcs-2.91.66)
Bug Fix
Description:
Added comments to the top of C++ files to indicate that it's a C++
file and not a C source code file. Also added a macro which makes
emacs automagically enter c++-mode. (Recommended by Frank Schimmel
fschimme@monsoon.CAPS.ou.edu)
