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508 Commits

Author SHA1 Message Date
Dana Robinson
039213d919 Brings file locking changes from develop 2020-08-14 12:35:07 -07:00
Dana Robinson
34323c289d Minor normalization with develop 2020-07-27 11:09:56 -07:00
Dana Robinson
252c57f8d0 H5F and H5FS normalization with develop. 2020-07-09 13:38:38 -07:00
Dana Robinson
47bf6a39be H5PB and H5Faccum normalization with develop. 2020-06-04 16:54:16 -07:00
Dana Robinson
dffe5efbb0 H5F normalizations with develop. 2020-06-04 12:52:31 -07:00
Dana Robinson
2477b60145 Removed trailing whitespace from source files. 2020-05-26 13:07:43 -07:00
Jacob Smith
8e5bdd64d9 Change FAIL_PUTS_ERROR to TEST_ERROR. 
Remove VOL-related merge cruft.
 2019-01-03 23:09:27 -06:00
Jacob Smith
734744df94 Remove unnecessary s 2019-01-02 12:40:30 -06:00
Jacob Smith
3c6944b684 Merge branch 'hdf5_1_10' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize_105 2018-12-31 15:05:57 -06:00
Jacob Smith
a8dc9793cb Incoporate minimized dataset headers code and tests. 2018-12-31 15:02:16 -06:00
Dana Robinson
029491e877 Merge of logging framework updates. 2018-12-30 19:11:41 -08:00
Dana Robinson
51edd286ac Removed 'VOL' versions of FUNC_ENTER macros as well as empty functions 
orginally intended to support the full SWMR feature (from develop).
 2018-12-30 16:55:10 -08:00
Dana Robinson
91089de53f Normalization with vol_integration branch. 2018-06-06 21:34:11 -07:00
Dana Robinson
02039e0a91 Minor warning cleanup while working on VOL issues. 2018-04-06 00:11:18 -07:00
Quincey Koziol
d834e9158c Merge remote-tracking branch 'origin/develop' into merge_func_enter_vol 2018-04-01 12:47:58 -05:00
Dana Robinson
b8f56d22df Created internal functions for a couple of H5F calls. 2018-03-30 01:11:19 -07:00
Quincey Koziol
eecf997bf5 Remove redundant 'is_collective' parameter from H5CX_set_loc. 2018-03-26 23:19:08 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
 2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Vailin Choi
f08b8fa10e Enhancement to the tool h5clear (HDFFV-10360) 2018-03-12 09:02:15 -05:00
Vailin Choi
37318f109a Changes made based on code reviews. 2018-01-12 14:36:03 -06:00
Vailin Choi
7af4786a9b Merge branch 'develop' into bugfix/version_bounds 
Merge from develop.
 2017-12-08 15:37:00 -06:00
Dana Robinson
c0021b348d Normalization with VOL integration branch. 2017-11-30 09:56:43 -08:00
Vailin Choi
96784c9873 (1) Merge branch 'develop' into bugfix/version_bounds 
(2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds.
(3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check.
(4) Add version bounds check for cache image feature.
 2017-11-25 02:22:24 -06:00
Allen Byrne
5717239a98 Remove tabs 2017-11-08 11:11:22 -06:00
Dana Robinson
1d3b4f6ac9 Moved the 'cache image + SWMR' check from H5Fcreate/open to H5F_open. 
Prep for the VOL merge.
 2017-10-19 15:30:57 -07:00
Vailin Choi
fe70476a22 Initial checkin for library version bounds 
Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
 2017-10-03 14:57:36 -05:00
Quincey Koziol
8880ec672e Style cleanups and misc. bugfixes discovered during full SWMR development. 2017-09-23 11:17:47 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
 2017-04-25 16:05:36 -05:00
Quincey Koziol
46c9ab600d Minor style cleanups 2017-03-22 10:54:25 -07:00
Quincey Koziol
9c606c3d90 Revert "Switch h5clear for cache images to use existing H5Pget_cache_image_config()" 
This reverts commit dd5105fc9912c77f6d6074700d83e5e8282e86c9.
 2017-03-22 09:58:40 -07:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Quincey Koziol
4fad103187 Bring changes to I/O parameters from page_buffering branch. 2017-03-13 08:21:28 -07:00
Quincey Koziol
0827105dda Review changes to closing files on error in H5Fcreate. 2017-01-30 21:26:03 -08:00
Quincey Koziol
1949d5756d Cache image feature and testing 2017-01-28 23:19:37 -08:00
Quincey Koziol
349f41d974 Switch list lengths to unsigned integers (to align better w/cache image merge) 2017-01-27 20:35:14 -08:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests 
and the tool and API wrappers will be coming in over the weekend.
 2016-12-02 08:07:04 -08:00
Dana Robinson
d3dbe9d90e Merge branch 'develop' into eoc_valgrind_bugfix 2016-11-29 15:06:37 -05:00
Quincey Koziol
b092dbcdfd Bring over another batch (hopefully the last) of non-SWMR "normalization" 
changes from the revise_chunks branch.
 2016-11-28 16:34:36 -08:00
Dana Robinson
a8d1aff235 Tentative fix for valgrind issues related to EoC. 
Adds /*out*/ parameters to H5O_close() and H5F_try_close() so
that H5D/G_close() will know when H5O_close() has triggered a
file close and thus the file struct is not reliable.

Also removes the H5F_CLOSING() macro and related which were
formerly used to check if the file was closing.
 2016-11-26 10:47:32 -05:00
Quincey Koziol
872d1666b4 Add public H5F* routines for cache logging. 2016-11-04 08:14:12 -07:00
Quincey Koziol
18ad868b23 [svn-r29924] Description: 
Bring h5format_convert tool from revise_chunks branch to trunk.

Tested on:
    MacoSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-05-12 15:47:03 -05:00
Quincey Koziol
bd33a9d6da [svn-r29842] Description: 
Bring [appropriate portions of] r29811, 29813, 29826, 29830, 29831 from
revise_chunks branch to the trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-04-30 01:10:38 -05:00
Dana Robinson
9333a2e39c [svn-r29548] Minor normalization w/ trunk in preparation for big merge. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           autotools parallel (MPICH 3.1.4)
 2016-03-23 22:58:43 -05:00
Dana Robinson
19a8216bd5 [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configure 
external dataset storage path behavior.

This check-in fixes a bug in the original check-in where the
external path stored in the file struct was not copied on reopen
causing subsequent dataset operations to fail.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ fortran and C++
           autotools parallel (MPICH 3.1.4) w/ fortran
 2016-02-22 16:40:03 -05:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations. 
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
 2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
91aeb766fa [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity checks from metadata dxpls 
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.

tested on BB-8 with serial and parallel.
 2016-01-21 17:31:15 -05:00
Quincey Koziol
8db3728779 [svn-r28916] Description: 
Normalize against incoming changes from the phdf5_metadata_opt branch.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-01-15 18:08:10 -05:00
Quincey Koziol
bd44db8a3c [svn-r28894] Description: 
Normalize against changes on phdf5_metadata_opt branch to trunk

Tested on:
    MacoSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-01-13 23:29:58 -05:00