Commit Graph

500 Commits

Author SHA1 Message Date
Larry Knox
3b3228a398 Revert "Merge pull request #2840 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_7 to hdf5_1_10_7"
This reverts commit c6916356c2, reversing
changes made to 6abf2770b3.
2020-08-25 15:46:52 -05:00
Larry Knox
c2bdb265f6 Updated version to 1.10.7.1. bin/h5vers changed to accomodate the
format change.
2020-08-25 12:45:07 -05:00
Dana Robinson
00388c4e0f Disables memory sanity checks in Autotools debug builds
** ONLY FOR THIS RELEASE BRANCH **
2020-08-19 12:04:34 -07:00
Larry Knox
aee3fb3d87 Commit changes for release branch: maintainer mode, default to production, set HDFF5_GENERATE_HEADERS to OFF, and add file generated by autogen.sh. 2020-08-19 11:28:45 -05:00
Larry Knox
8b75cd714b 1. HDFFV-10830 part 2, move AC_CHECK_HEADERS([szlib.h] after
AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress] to avoid compiling
            H5Z.c with szlib.h after its path is removed from AM_CPPFLAGS.
2. Remove unnecessary links to ${HDF5_TOOLS_LIB_TARGET} in
utils/mirror_vfd/CMakeLists.txt that prevent building HDF5 with tools
disabled.
2020-08-17 07:03:28 -05:00
Dana Robinson
5a61eb24af Brings Mirror VFD to 1.10 from develop 2020-08-14 16:15:44 -07:00
Dana Robinson
039213d919 Brings file locking changes from develop 2020-08-14 12:35:07 -07:00
Dana Robinson
a3aedfff18 Brought over thread-safety changes from develop. 2020-07-20 14:06:54 -07:00
Larry Knox
fe18e4fd13 Merge pull request #2686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '800f93f7c994f88dfa716746153ded4b1e690e3a':
  Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830.
2020-07-13 12:24:59 -05:00
Larry Knox
c6f2205abe Merge pull request #2670 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'fc69de0e8ae30e80c1c3c542b156226a75444525':
  Lib files needed are now copied to a subdirectory in the java/test directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
2020-07-06 14:21:53 -05:00
Larry Knox
e64ed323db Merge pull request #2656 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:changes_1_12_merge to hdf5_1_12
* commit '538b1317646f52658c2a896bbde4dce4246a9761':
  Squashed commit of the following:
  Addition of clang-warnings flags
  Update examples/teth5cc.sh.in for version 1.10.
2020-06-21 17:42:59 -05:00
Dana Robinson
63b538ab78 Misc fixes and changes from develop. 2020-05-15 22:10:45 -07:00
Dana Robinson
730d6cc53f Normalization of high-level library with develop. Also brings the
warnhist script over.
2020-05-15 05:02:37 -07:00
hdftest
489f46b5be Snapshot version 1.10 release 7 (snap0)
Update version to 1.10.7-1
2020-04-26 18:08:58 -05:00
Allen Byrne
944cbb9400 TRILAB-192 merging warnings changes from develop 2020-03-30 13:10:36 -05:00
Larry Knox
b85582098c Update version for HDF5_1_10 2019-12-11 13:15:44 -06:00
Larry Knox
e7ef8cd945 Snapshot version 1.10 release 6 (snap3)
Update version to 1.10.6-snap4
2019-11-12 09:32:59 -06:00
Allen Byrne
2a6053435c Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '2ca63e3890ebdaee7dc835e5d995ff03a182940f':
  Snapshot version 1.10 release 6 (snap2)     Update version to 1.10.6-snap3
2019-09-18 08:45:47 -05:00
hdftest
ab45fbc81b Snapshot version 1.10 release 6 (snap2)
Update version to 1.10.6-snap3
2019-09-17 15:16:24 -05:00
Allen Byrne
3457362c92 Merge S3 code from develop to 1.10 2019-09-13 12:18:36 -05:00
hdftest
a0e9f457eb Snapshot version 1.10 release 6 (snap1)
Update version to 1.10.6-snap2
2019-08-26 08:34:37 -05:00
M. Scot Breitenfeld
31ea5ab6c7 Removed FORTRAN_SIZEOF_LONG_DOUBLE from public .h files 2019-08-05 11:28:23 -05:00
Songyu Lu
59d7db40a7 HDFFV-10658: setting and getting properties in API context. Porting the changes to the develop branch into the 1.10 branch: mainly the external file prefix and VDS prefix. 2019-07-26 15:01:40 -05:00
Dhvanil Popat
5d954a0214 Squash commit of options to build tools and tests 2019-06-25 01:40:07 +00:00
hdftest
5894e19ad5 Snapshot version 1.10 release 6 (snap0)\nUpdate version to 1.10.6-snap1) 2019-04-01 17:02:17 -05:00
Larry Knox
afc010179c Update version on hdf5_1_10 branch to 1.10.6-snap0. 2019-02-18 15:14:43 -06:00
Dana Robinson
12fc6bf955 Merge of changes from develop for 1.10.5.
Added RELEASE.txt entries for new features.
2019-02-03 23:47:51 -08:00
Ray Lu
2bd5c6d529 Merge pull request #1450 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop
* commit 'b02de315b93ac29d2483a91d526b110a25073505':
  NNSA Tri-LabsTRILAB-98: Another two test cases out.
  NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.
  NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu).  All failing cases involve long double data type.
2019-01-18 16:30:25 -06:00
M. Scot Breitenfeld
6e489435e9 merged:
HDFFV-10652
HDFFV-10443
2019-01-10 17:10:05 -06:00
Vailin Choi
98b2d7d8bb Merge pull request #1442 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit '1a50622733c14d89b3fd8c6bab684af9205a3b96':
  Fix for daily test failure: too many arguments to function 'H5Gopen1'.
  Fix the git merge leftover in RELEASE.txt.
  Fix the git merge leftovers in RELEASE.txt.
  Fix for HDFFV-10659: The library aborts with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
2019-01-07 17:13:37 -06:00
Dana Robinson
257e05e1b2 Merged the rest of the parallel flush test code. 2019-01-07 11:16:39 -08:00
Vailin Choi
489f6fb697 Fix for HDFFV-10659: The library aborts with "infinite loop closing library"
after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
2019-01-06 09:25:48 -06:00
Dana Robinson
029491e877 Merge of logging framework updates. 2018-12-30 19:11:41 -08:00
hdftest
cd15e7eaa2 Snapshot version 1.10 release 5 (snap1) 2018-11-08 07:38:06 -06:00
Allen Byrne
b6e61e8310 Merge CMake changes from develop
Improved cross-compiling and toolchains
2018-10-23 11:00:36 -05:00
Larry Knox
20712bef86 Update version 2018-09-05 15:11:44 -05:00
Allen Byrne
aab40090f0 HDFFV-10552 Add missing HDF5_USE_110_API_DEFAULT option 2018-08-17 15:01:23 -05:00
Jordan Henderson
da698a0720 Rearrange issues by date order
Update version.
Update .so versions to match 1.10.3.
2018-08-09 13:48:52 -05:00
Jordan Henderson
bccf6e38a4 Add Autotools and CMake checks for big I/O MPI-3 functions 2018-08-02 09:47:35 -05:00
Jordan Henderson
0623b06b15 Add configure check for MPI_Mprobe and MPI_Imrecv functions
Add line to libhdf5settings file for status of Parallel writes to
filtered datasets status

Surround Parallel Compression code in MPI_VERSION >= 3 checks

Add disabled message for Parallel Compression built w/ MPI-2

Modify Parallel Compression tests to only run the parallel filtered read
tests when parallel filtered writes are disabled

Update big I/O code to handle being built with MPI-2

Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
2018-08-02 09:46:34 -05:00
Larry Knox
35542e9de8 Apply Cygwin pathches from Marco Atzeri.
Commit Joe Lee's typo corrections for src/H5MF.c.
2018-07-26 17:22:09 -05:00
Binh-Minh Ribler
e57234b027 Fixed HDFFV-10404
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
2018-07-26 17:19:03 -05:00
hdftest
25f80cbbec Snapshot version 1.10 release 3 (snap3) 2018-06-24 17:35:05 -05:00
hdftest
67d6f8d405 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-16 17:47:39 -05:00
Scot Breitenfeld
87829e0618 Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-15 13:53:36 -05:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
hdftest
afe28b7607 Snapshot version 1.10 release 3 (snap2) 2018-06-03 21:53:30 -05:00
Dana Robinson
890203482a Changed 'deprecated' to indicate 'no longer supported' in the
--enable-debug/production configure flags.
2018-05-31 13:17:18 -07:00
hdftest
f8690c40b9 Updated version to 1.10.3-snap2 2018-05-29 15:16:31 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00