Commit Graph

298 Commits

Author SHA1 Message Date
Allen Byrne
02a5508e50 Reinstate java API removed in 1.10.8 (#1697)
* Revert java API removal with JNI private function

* Fix name typo

* Correct format
2022-04-28 22:46:21 -05:00
Allen Byrne
41a36efde1 Add java to format source (#1690) 2022-04-25 20:32:50 -05:00
jhendersonHDF
3961f6500d Hdf5 1 10 merges (#1633) 2022-04-14 09:05:40 -05:00
Allen Byrne
407c52f397 Merge various cleanup java test, test files, comments (#1364)
Plus some spelling corrections
2022-01-19 17:30:19 -06:00
Allen Byrne
240108c2d7 Merge Update the java slf4j logging jars to latest 1.7.33 (#1371) 2022-01-14 17:27:45 -06:00
Allen Byrne
e7f11d487c 1.10 Merge Add javadoc to packages - HDFFV-11285 (#1199)
* Merge Add javadoc to packages - HDFFV-11285

* Correct list
2021-11-20 08:34:03 -06:00
Allen Byrne
a931934fa7 Merge Correct java exception declarations #1121 (#1123) 2021-10-25 09:28:18 -05:00
Allen Byrne
8299373d41 1.10 Merge Add missing dataset reference text #1081 (#1083)
* Merge Add missing dataset reference text #1081

* Only print name if not printing data
2021-10-09 09:23:49 -05:00
Larry Knox
0e9960a401 Update version to 1.10.9-1. (#1069)
Clear 1.10.8 entries out of RELEASE.txt.
2021-10-03 13:24:21 -05:00
Allen Byrne
3d085ed2db Fix javadoc and java warnings (#1011) 2021-09-16 08:48:12 -05:00
Larry Knox
440cb48268 Update copyright headers with reproduction notice in 5 files (#993) (#1002)
* Update copyright headers with reproduction notice in 5 files that did
not match terms in COPYING file
.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-09-09 13:59:28 -05:00
Allen Byrne
e367c80b39 1.10 merge clang tidy of examples and hl (#966)
* Merge of clang tidy of examples and hl from 1.12

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-08-25 18:21:03 -05:00
Allen Byrne
cde9951d8e Correct dataset close in java test #919 (#921) 2021-08-19 13:19:41 -05:00
Allen Byrne
27198d814a Hdf5 1 10 merge of printf specifiers and VS2015 min changes (#612)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source

* Change windows TS to use older VS.

* Mostly all javadoc fixes, one argument rename.

* synch file

* Merge of long double fix and compiler flags

* HDFFV-11229 merge changes from develop

* HDFFV-11229 correct test script

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* minor whitespace

* remove unneeded macro

* Committing clang-format changes

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Fortran target depends

* Remove incorrect source attribute

* Revert define removal

* printf specifiers and VS2015 min changes

* Committing clang-format changes

* Add time struct

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-04-30 11:07:50 -05:00
Larry Knox
d29e11cdb6 110 copying update (#564)
* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Update license url (#332)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.

* Cleans up a couple of MSVC warnings in testhdf5 (#475)
* Fixes a few testhdf5 warnings raised in Visual Studio

Visual Studio is grumpier about treating pointers like integers than
gcc.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix typos and grammar errors. (#476)

* Suppresses the tcheck_version test's abort dialog on Windows (#477)

* Suppresses the tcheck_version test's abort dialog on Windows

Windows raises a modal abort/retry/ignore dialog box when CRT
calls abort(). This change installs a report hook that suppresses
the dialog so that the CMake tests don't time out waiting for a
nonexistent user to click a dialog box.

* Committing clang-format changes

* Removes __cdecl from callback

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Update top-level COPYING file and remove COPYING files from
subdirectories.

* Update top-level COPYING file and remove COPYING files from subdirectories (#561)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING (license) file.

* Add release_docs/code-conventions.md file.

* Add script to test h5py.

* Fix script error.

* Add file h5pytest.yml.

* Test declaration of counter variables in for loops.

* Committing clang-format changes

* Committing clang-format changes

* Added [] to line 126 of H5LTanalyze.l.
Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly.

* Revert "Added [] to line 126 of H5LTanalyze.l."

This reverts commit e4a9cee441.

* Revert extra commits to match canonical develop.

* Update top-level COPYING file and remove COPYING files from
subdirectories.

* Remove subdirectory COPYING files from MANIFEST.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-04-26 14:08:31 -05:00
Allen Byrne
c9caf426a8 1 10 Merge of long double fix and compiler flags (#531)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source

* Change windows TS to use older VS.

* Mostly all javadoc fixes, one argument rename.

* synch file

* Merge of long double fix and compiler flags

* HDFFV-11229 merge changes from develop

* HDFFV-11229 correct test script

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* minor whitespace

* remove unneeded macro

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-04-19 17:19:58 -05:00
Larry Knox
87d18137ce Hdf5 merge issue 487 v110 (#533)
* Cleans up a couple of MSVC warnings in testhdf5 (#475)
* Fixes a few testhdf5 warnings raised in Visual Studio

Visual Studio is grumpier about treating pointers like integers than
gcc.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix typos and grammar errors. (#476)

* Suppresses the tcheck_version test's abort dialog on Windows (#477)

* Suppresses the tcheck_version test's abort dialog on Windows

Windows raises a modal abort/retry/ignore dialog box when CRT
calls abort(). This change installs a report hook that suppresses
the dialog so that the CMake tests don't time out waiting for a
nonexistent user to click a dialog box.

* Committing clang-format changes

* Removes __cdecl from callback

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
2021-04-01 15:14:21 -05:00
Allen Byrne
05b0f6745c 1 10 - Mostly all javadoc warning fixes (#508)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source

* Change windows TS to use older VS.

* Mostly all javadoc fixes, one argument rename.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-03-25 07:35:24 -05:00
Allen Byrne
dd5b8a8747 1 10 Fix java data export functions (#450)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source
2021-03-10 07:41:14 -06:00
Allen Byrne
583e9d5c32 1 10 Merges from develop (#424)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file
2021-03-04 16:06:47 -06:00
Allen Byrne
c14fa9cebf 1 10 merge java copyright header changes (#392)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder
2021-03-01 12:33:35 -06:00
Larry Knox
dea591a353 Hdf5 1 10 update license url part2 (#404)
* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Update license url (#332)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.

* Update license url part2 (#333)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.

* Update URL in source file Copyright headers for web.

Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
2021-03-01 10:35:51 -06:00
Allen Byrne
8cfcf0e394 1 10 merges from develop (#298)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms
2021-02-04 08:20:25 -06:00
Allen Byrne
674e1f02a3 1 10 Whitespace changes after clang-format run (#287)
* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes
2021-01-29 06:59:33 -06:00
Larry Knox
0a7296663b Hdf5 1 10 - Modify temporary rpath for testing in java example scripts (#243)
* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Modify temporary rpath for testing in java example scripts. (#230)

Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
2021-01-06 08:13:59 -06:00
Allen Byrne
be511b5b6d HDFFV-10865 - merge from dev, HDFArray perf fix. (#234) 2020-12-29 15:37:54 -06:00
Allen Byrne
14bfa9a991 Correct TARGET variable and CMake config file location 2020-11-12 10:50:50 -06:00
Allen Byrne
bfae464875 HDFFV-10868 merge java changes from develop 2020-11-03 16:56:16 -06:00
Allen Byrne
ec13e5f872 OESS-98 add CMake option to build plugins project within hdf5 2020-10-16 12:15:29 -05:00
Allen Byrne
b7991773cd Convert testEquals to test contains 2020-10-05 09:15:28 -05:00
Allen Byrne
ec8ad09125 Source formatted 2020-10-01 10:29:53 -05:00
Allen Byrne
ca0c0c3dc8 Merge of clang-format changes from develop 2020-09-30 09:28:21 -05:00
Larry Knox
0315478a9b Updated HDF5 1.10 support branch version number to 1.10.8-0 2020-08-19 09:05:36 -05:00
Allen Byrne
7d02a1769f Fix javadoc warning 2020-08-16 13:33:07 -05:00
Dana Robinson
039213d919 Brings file locking changes from develop 2020-08-14 12:35:07 -07:00
Dana Robinson
98ca520f55 Brings HDFFV-11027 H5S_NO_CLASS fix to 1.10 from develop 2020-08-11 09:48:47 -07:00
Larry Knox
c0702f601e Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for junit tests on Macs. 2020-07-07 10:48:08 -05:00
Larry Knox
713b575c24 Merge pull request #2667 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '32c483cb86031962a09ecdb49dcb331d28dddee9':
  Copy lib files for junit.sh to temporary subdirectory of <build directory>/java/test instead of to the prefix/lib directory.  Fix for HDFFV-11063.
2020-07-06 15:17:54 -05:00
Larry Knox
c6f2205abe Merge pull request #2670 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'fc69de0e8ae30e80c1c3c542b156226a75444525':
  Lib files needed are now copied to a subdirectory in the java/test directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
2020-07-06 14:21:53 -05:00
Allen Byrne
61d2183926 Correct arg references 2020-06-22 08:49:18 -05:00
Allen Byrne
e4e86174dc HDFFV-11111 correct ifdef logic 2020-06-18 14:41:03 -05:00
Allen Byrne
00f39b23c1 HDFFV-11111 add unimplemented errors in JNI 2020-06-18 13:20:47 -05:00
Dana Robinson
2477b60145 Removed trailing whitespace from source files. 2020-05-26 13:07:43 -07:00
Allen Byrne
2b9874609f Correct spelling 2020-05-18 06:41:23 -05:00
Allen Byrne
17461c57b8 Add github actions file and cleanup java 2020-05-06 12:33:04 -05:00
Allen Byrne
f502d9f7fb TRILAB-192 - merge changes from develop
Single source, config files, for warnings for both autotools and CMake.
Update CMake libraries, tools, tests to use correct flags.
2020-04-07 09:52:09 -05:00
Allen Byrne
7b56e78cd1 Correct cb object name 2020-03-30 15:37:35 -05:00
Allen Byrne
944cbb9400 TRILAB-192 merging warnings changes from develop 2020-03-30 13:10:36 -05:00
Allen Byrne
467b5d565c Merge CMake and tools changes from develop 2020-02-27 16:54:52 -06:00
Allen Byrne
4ef9c81048 Added new CMake options for tests 2020-01-19 07:56:14 -06:00