Commit Graph

138 Commits

Author SHA1 Message Date
Larry Knox
11dfa25910 Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
luzpaz
174505ca3c Fix typos found in the rest of the hdf5 code-base (#1985)
* Fix typos found in the rest of the hdf5 code-base

* Typo in tool.cmake

* Revert "Typo in tool.cmake"

This reverts commit 06b8403d99.

* Fix clang-format styling
2022-08-10 13:57:26 -07:00
Allen Byrne
ae414872f5 Develop clang 13 format (#1933)
* Update format source to clang 13

* More format changes
2022-07-26 14:45:46 -07:00
Dana Robinson
838d050a63 h5test.h testing macros get enclosed in do..while loops (#1721)
* h5test.h testing macros get enclosed in do..while loops

* Adds missed macro in hl C++ code

* Fixes macro in Windows code
2022-05-04 08:49:01 -07:00
jhendersonHDF
5eba258d90 Fix object size warnings in cache.c test (#1701) 2022-05-01 15:54:22 -05:00
Scot Breitenfeld
f859cb732b Fixed Spelling Errors (#1166)
* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-07 08:27:29 -06:00
jhendersonHDF
3da0802c40 VFD plugins (#602)
* Implement support for loading of Virtual File Drivers as plugins

Fix plugin caching for VOL connector and VFD plugins

Fix plugin iteration to skip paths that can't be opened

* Enable dynamic loading of VFDs with HDF5_DRIVER environment variable

* Temporarily disable error reporting during H5F_open double file open

* Default to using HDstat in h5_get_file_size for unknown VFDs

* Use macros for some environment variables that HDF5 interprets

* Update "null" and "ctl testing" VFDs
2021-09-29 13:28:12 -05:00
H. Joe Lee
6b94bf50a0 OESS-168:Remove implicit conversion warnings. (#829)
* OESS-168:Remove implicit conversion increases floating-point precision warnings.

* OESS-168:Remove clang warnings.
2021-07-12 09:00:48 -05:00
Dana Robinson
734d317da9 Removes obsolete equivalents of C99's __func__ (#800) 2021-06-28 23:58:38 -05:00
Dana Robinson
e60ac6ec2d Removes pre-C99 build and header cruft (#700)
* Committing clang-format changes

* Removes pre-C99 build and header cruft

* Assumes ANSI C headers exist
* Assumes stdbool.h, stdint.h, and inttypes.h are present
* Assumes the C++ compiler can handle stdint.h
* Removes all work-arounds for missing functionality, especially stdbool.h

* Formats source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-05-28 07:48:29 -05:00
Dana Robinson
9023e98940 Removes gratuitous (double)x.yF casts (#632)
* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-05-07 11:45:05 -05:00
Sean McBride
6794428d23 Fixed clang-tidy readability-redundant-control-flow warnings (#428)
* Fixed clang-tidy readability-redundant-control-flow warnings

Just removed useless trailing return statements.

* Removed blank lines from h5diffgentest.c with clang-format v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-03-05 08:51:01 -06:00
Sean McBride
580008d5bb More warning fixes (#400)
* Fixed -Wunused-local-typedef warning

* Fixed -Wformat warnings

In one case also removed a `z` character. There was a `z%d` that I think was supposed to be `%zd`

* Fixed -Wshorten-64-to-32 warnings

* Fixed -Wself-assign warnings

* Fixed -Wreserved-id-macro warnings

* Commit format changes from clang-format, clang version 10.0.1.

* Fixed -Wself-assign warnings

* Fixed -Wunused-local-typedef warning

* Fixed -Wformat warnings

In two cases also removed a `z` character. There was a `z%d` that was supposed to be `%zd`.

* Fixed -Wshorten-64-to-32 warnings

* Fixed -Wreserved-id-macro warnings

* Fixed -Wself-assign warnings

* Format source.

* Remove blank lines to pass format check.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-03-04 15:06:30 -06:00
Larry Knox
4819f89d3f Update license url (#332)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
2021-02-17 08:52:04 -06:00
Allen Byrne
6db183590f develop revert source to clang-format version 11 (#293)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction
2021-01-29 06:55:18 -06:00
Quincey Koziol
adf7b1d4cf Add flag to H5CX_pop that allow setting the properties to return to application to be skipped. (#134) 2020-12-01 10:15:34 -06:00
Quincey Koziol
5ff09ae971 Basic alignment with async branch (#115)
* Basic alignment with async branch - trivial changes to reduce clutter in overall diff.

* Update minor error code to reflect change within library

* Update the error output to match library
2020-11-23 10:18:26 -06:00
Allen Byrne
b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
Allen Byrne
d8d17d2328 File changes to affect formatting 2020-09-04 16:51:30 -05:00
mainzer
12bb6d7665 Tab to space conversions.
Re-applied tab to space conversions accidentally reverted in the
commit of the metadata cache skip list optimization, and performed
some additional tab to space conversions in passing.

Tested parallel / debug on Jelly.
2020-08-14 12:16:47 -05:00
mainzer
3202416936 Merge branch 'develop' into mdc_sl_opt 2020-08-13 11:31:16 -05:00
Dana Robinson
5ce2a17804 Removes staff email addresses from the repository
Removes redundant C library headers from hl library
2020-08-06 17:58:07 -07:00
mainzer
33f35183cb When flushing, the metadata cache attempts to flush entries in increasing
address order.  To facilitate this, the metadata cache needs a list of
of dirty entries in increasing address order.  This is implemented via a
skip list of all dirty entries in the cache.

To date this skip list has been maintained at all times.

However, profiling indicates that we can avoid significant overhead by
constructing the skip list of dirty entries just before a flush, taking
it down afterwareds, and not maintaining it during normal operation.

This commit implements this optimization for both serial and parallel.

Tested serial and parallel, debug and production on charis and jelly.
2020-08-05 15:39:49 -05:00
David Young
3e93aa9514 So that I can use PASSED(); anywhere a statement can go, #define PASSED() with
a do-while wrapper.
2020-02-28 16:51:55 -06:00
Dana Robinson
492d186a5c Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""
This reverts commit 6486e06545.
2020-01-23 14:40:47 -08:00
Allen Byrne
b89d428087 Adjust cache.c only variables. 2019-12-18 14:29:46 -06:00
Allen Byrne
527105012b Fix include to correct memory calls - big-endian issue. 2019-12-18 12:44:27 -06:00
Allen Byrne
3ab183ba99 HDFFV-10979 cleanup globals 2019-12-12 12:20:49 -06:00
Allen Byrne
8ef8f5fda9 HDFFV-10979 fix global name clash 2019-12-11 15:58:59 -06:00
David Young
0108072f7a Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2019-11-27 11:26:02 -06:00
David Young
34eff2aae5 Change some GCC warnings to errors. Fix code to quiet some warnings. 2019-11-05 12:14:26 -06:00
Allen Byrne
64e6665b54 Add HD prefix to tests 2019-08-15 16:46:15 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Quincey Koziol
744b6b282f Better segregate clean & dirty LRU lists so that they are only defined when
the H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS macro is defined.
2017-09-30 09:50:58 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
mainzer
4651eb738d Express test mods to test/cache.c
Modified test/cache.c to skip the smoke checks with paged aggregation
for all express test levels other than 0

Change to src/H5PL.c seems to be the result of autogen.sh.  As it
seems to be correct, I am checking it in.

Tested serial and parallel (debug only) on jelly.
2017-04-14 23:44:23 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Quincey Koziol
0b78740ff4 Merge in reentrency changes to "make space in cache" from page_buffering branch. 2017-03-13 07:45:42 -07:00
Quincey Koziol
c4a36e0bb3 Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from
a cache image.
2017-03-12 01:57:19 -08:00
Quincey Koziol
5df52404bc Misc. small cleanups to sync against incoming page buffering changes. 2017-03-02 06:24:46 -08:00
Quincey Koziol
4b5e05c084 Fix some more signed -> unsigned value issues with cache data structures, also
misc. style cleanups.  All to align w/incoming page_buffering changes.
2017-02-22 23:21:41 -08:00
Quincey Koziol
101fa7af8e Cleanups and normalizations against incoming page_buffering changes. 2017-02-19 18:28:52 -08:00
Allen Byrne
2b383bb8ff HDFFV-10124 Using cache_common.h contains other include files 2017-02-02 11:55:01 -06:00
Quincey Koziol
1949d5756d Cache image feature and testing 2017-01-28 23:19:37 -08:00
Quincey Koziol
5a776edb81 Bring change to use array of metadata cache entry classes for H5C_create
instead of array of class names from cache image branch.
2017-01-27 23:18:47 -08:00
Quincey Koziol
349f41d974 Switch list lengths to unsigned integers (to align better w/cache image merge) 2017-01-27 20:35:14 -08:00
Quincey Koziol
7568dcaf15 Add "image up to date" flag / parameter to metadata cache entry status calls. 2017-01-06 07:51:40 -08:00
Quincey Koziol
afd7e5b476 Bring file shutdown code from cache image branch 2017-01-04 21:36:14 -08:00
Quincey Koziol
0610c41c75 Bring support for doubly-linked list of all entries in cache from incoming
cache image branch.
2016-12-30 02:22:48 -08:00
Quincey Koziol
da2f1610d1 More normalizations against incoming cache image branch. 2016-12-29 02:40:26 -08:00