Commit Graph

25 Commits

Author SHA1 Message Date
Larry Knox
11dfa25910 Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
Allen Byrne
ae414872f5 Develop clang 13 format (#1933)
* Update format source to clang 13

* More format changes
2022-07-26 14:45:46 -07:00
Dana Robinson
d433f0f7a6 Removes the STATIC flavor of FUNC_ENTER macros (#1622)
* Removes the STATIC flavor of FUNC_ENTER macros
2022-04-08 14:32:40 -05:00
Scot Breitenfeld
f859cb732b Fixed Spelling Errors (#1166)
* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-07 08:27:29 -06:00
Sean McBride
f6c49fe891 More clang tidy (#908)
* Pacify clang-analyzer-unix.cstring.NullArg

* Apply some bugprone-suspicious-string-compare

* Apply some readability-simplify-boolean-expr

* Apply some readability-make-member-function-const

* Apple some bugprone-macro-parentheses

* Changed an f suffix to L for `long double`

* Applied some readability-uppercase-literal-suffix automatically

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-08-23 16:14:53 -05:00
Larry Knox
4819f89d3f Update license url (#332)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
2021-02-17 08:52:04 -06:00
Allen Byrne
b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
Quincey Koziol
07e4ef9da4 Clean up private / package / static namespace issues (function naming, which
header file, FUNC_ENTER / LEAVE, etc).  Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
2020-08-06 15:56:04 -05:00
Quincey Koziol
9e5dbf6906 Trim trailing whitespace 2020-04-20 18:12:00 -05:00
Neil Fortner
1dbec40d46 Implement H5VLget_file_type() to return a copy of a datatype with the
location set to be in a file.  Only meant to be used by VOL connectors.
Implement H5VLpeek_connector_id() to support connectors querying their
own IDs.  Fix app_ref with connector IDs in a couple places (external
VOLs registered as default through ENV should be visible to the
application).  Modify vlen and reference interfaces to work with
arbitrary VOL connectors.  Implement file "post open" specific
callback, to enable connectors to update their file structs after a
wrap context has been set.
2019-11-08 15:14:33 -06:00
Quincey Koziol
c36d2eeae7 Switch shared file struct name from 'H5F_file_t' to 'H5F_shared_t', to match
naming convention for shared structs in rest of library data structures.
2019-08-22 13:28:20 -05:00
Quincey Koziol
92300f954f Corrected comment in src/H5VLint.c, fixed pass-through info size in
src/H5VLpassthru.c, switched to stashing VOL connector ID & info in
API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and
src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work
with 'check-vfd' (and 'check-vol' again).
2019-01-05 23:06:45 -06:00
Dana Robinson
680cf4d946 Removed 'VOL' versions of FUNC_ENTER macros as well as empty functions
orginally intended to support the full SWMR feature.
2018-09-18 14:10:14 -07:00
Dana Robinson
91089de53f Normalization with vol_integration branch. 2018-06-06 21:34:11 -07:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Dana Robinson
a8d1aff235 Tentative fix for valgrind issues related to EoC.
Adds /*out*/ parameters to H5O_close() and H5F_try_close() so
that H5D/G_close() will know when H5O_close() has triggered a
file close and thus the file struct is not reliable.

Also removes the H5F_CLOSING() macro and related which were
formerly used to check if the file was closing.
2016-11-26 10:47:32 -05:00
Quincey Koziol
ee7612be44 [svn-r27811] Description:
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly.  This
cleans up another batch of memory leaks, etc. within the library.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (h5committest forthcoming)
2015-09-16 17:27:49 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Quincey Koziol
61a411b02f [svn-r25450] Description:
Initial tweaks to align with VOL branch.

Tested on:
    Mac OSX/64 10.9.3 (amazon) w/gcc 4.9
    (h5committest not required, too small)
2014-07-21 11:05:04 -05:00
Quincey Koziol
9c9ee2008c [svn-r21919] Description:
Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.

Tested on:
    Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
2012-02-08 22:13:27 -05:00
Neil Fortner
395c1c7db5 [svn-r21603] Purpose: Add generic skip list implementation
Description:
Added new H5SL_TYPE_GENERIC skip list type, which uses void *'s as keys and a
client-supplied callback for key comparison.  This was added to support the
upcoming "merge named datatype" feature for H5Ocopy, but may be used in other
places as well.  Also added testing.

Also fixed a potential bug with the H5SL_TYPE_OBJ implementation, and added
testing for that.

Tested: jam, koala, heiwa (h5committest), durandal
2011-10-18 16:27:58 -05:00
Raymond Lu
4e5f011c34 [svn-r20778] I changed the macro definition of DIR_SEPC and DIR_SEPS to ']' for OpenVMS in H5private.h. Strictly speaking, it isn't
the directory seperator.  But it can simplify the code and make the H5L_build_name function cleaner.  

Tested on jam because the change only affects VMS.
2011-05-09 15:31:43 -05:00
Neil Fortner
0863d30372 [svn-r20064] Purpose: Implement external file cache
Description:
Implements a cache of files opened through external links.  Adds the public
functions H5Pset_elink_file_cache_size(), H5Pget_elink_file_cache_size(), and
H5Frelease_file_cache().

Tested: jam, amani, heiwa (h5committest), fedora 64.
2011-02-08 12:32:56 -05:00