Commit Graph

3207 Commits

Author SHA1 Message Date
Muqun Yang
9c3fe9fe7c HDFFV-11014, fix the h5repack issue that misses a few attributes during the repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt. 2020-05-20 09:31:54 -05:00
Allen Byrne
e0e020eb6b Small fixes for tools and skip autotools tests for no filter 2020-05-20 09:31:54 -05:00
David Young
13bb3afdc6 Reduce differences between my -Werror branch and develop:
Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
shadowed declaration warnings about index(3).

Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
2020-05-20 09:31:54 -05:00
David Young
2badc1bf32 Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
Reduce gratuitous casts---e.g., (size_t)1.

Use the right format string for a pointer.

In the H5C sanity checks, change a "size increase" variable from ssize_t
(too narrow) to int64_t (wide enough).

Parenthesize every appearance of `storage` in the macro
`H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an
expression like &sc and it works properly.

Disallow re-assignment of the `dset` parameter to H5D__chunk_init()
because it helped assure me that it's safe to replace the repeating
expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout.

Replace lengthy expressions such as
`&dset->shared->layout.storage.u.chunk` with `sc` throughout several
functions in H5Dchunk.c ISTR that the compiler warned that `sc` was
declared but unused in a couple of functions, and then I found that `sc`
could be used in many places.  Maybe the disused `sc` appeared because a
bunch of code was copied and pasted, I don't know.  Anyway, it's a lot
tighter code now that I use `sc`.

In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete()
I actually expand `sc` and another temporary variable, `pline`,
because they're used only in !defined(NDEBUG) code.  This squashes
unused-variable warnings in the defined(NDEBUG) configuration.

Don't drop the `volatile` qualification with a cast in
tools/src/h5import/h5import.c.
2020-05-20 09:31:53 -05:00
David Young
2360f6e644 testpar/t_2Gio.c: Fix a typo that I think was introduced by a
previous warnings PR.  An array element was assigned to
        itself---shape[2]Â =Â shape[2];---instead of being assigned to
        chunk[2].

fortran/src/H5Pf.c: move conditional compilation controlled by
        H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

fortran/src/H5match_types.c: put a variable's declaration under the same
        conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
        use.

For now, skip compilation of some unused debug dump routines in the JNI.
While I'm in the JNI, delete a set-but-unused variable.

src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
        so that it's not declared but unused or vice versa.

test/cache_common.h: add an #include in to get some symbols we need to
        avoid implicit declaration warnings.

test/dsets.c: use a more conventional conditional-compilation syntax.

test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
        variables before use.

test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
        instead of `int **`.

testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
        "equal to 0?" is the question not "is false?"  Repair some
        indentation while I'm here.

testpar/testpar.h: repair misaligned line-continuation backslashes in a
        macro that probably should be a function so that we don't have
        to fiddle with the line continuation to begin with.

tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
        enums.

tools/test/perform/pio_engine.c: the compiler fusses if you cast a
        function call returning double directly to off_t.  It's ok if
        you cast a variable that's a double to off_t, however.  Write
        and use a new function, sqrto(), to avoid the cast warnings.
2020-05-20 09:31:53 -05:00
kmu
cfcac15f03 fix bad function cast warning 2020-05-20 09:31:53 -05:00
Allen Byrne
b44b3d136d HDFFV-11011 correct issues with target file extension 2020-05-20 09:31:53 -05:00
Jordan Henderson
2e962dc49b Introduce new H5VL _by_value routines 2020-05-20 09:31:53 -05:00
Allen Byrne
09ba68d026 Correctly manage warnings for new tests 2020-05-20 09:31:53 -05:00
kmu
d59460e632 change condition 2020-05-20 09:31:53 -05:00
kmu
51f9a51c25 fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow 2020-05-20 09:31:53 -05:00
Dana Robinson
eaaedabaa5 Replaced my_isnan with C99 isnan in h5diff. 2020-05-20 09:31:53 -05:00
Allen Byrne
c491fd1cfc Remove cmake macros from valgrind tests 2020-05-20 09:31:53 -05:00
Dana Robinson
6e8ce00c0b Optimized the floating point comparisons a little bit. 2020-05-20 09:31:53 -05:00
Dana Robinson
23f103cf6b Fix for failing h5diff tests involving floating-point compares. 2020-05-20 09:31:53 -05:00
Dana Robinson
3290803120 Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""
This reverts commit 6486e06545.
2020-05-20 09:31:52 -05:00
Dana Robinson
36647e79b9 Revert "Moved -Wunsuffixed-float-constants to the developer warnings."
This reverts commit 12bc75c617.
2020-05-20 09:31:52 -05:00
Dana Robinson
40c5e67e41 Moved -Wunsuffixed-float-constants to the developer warnings. 2020-05-20 09:31:52 -05:00
kmu
30e61cf090 squash cast warning fix 2020-05-20 09:31:52 -05:00
Allen Byrne
cfd8856288 Change tools debug macros to not use error stack 2020-05-20 09:31:52 -05:00
kmu
f0ee8b2883 not use hdf5 private header 2020-05-20 09:31:51 -05:00
kmu
1c226ac077 fix float type cmp warning 2020-05-20 09:31:51 -05:00
kmu
8d5ae4f460 fix float type cmp warning 2020-05-20 09:31:51 -05:00
kmu
742aa75cd0 fix missing prototype warning 2020-05-20 09:31:51 -05:00
kmu
27c618b91d fix unused related warnings 2020-05-20 09:31:51 -05:00
kmu
6b07d692f4 more fix and address comments 2020-05-20 09:31:51 -05:00
kmu
a6e8f34b7b remove unsed var,function,macro, etc 2020-05-20 09:31:51 -05:00
kmu
0c9d2de9e2 fix uninitizlized warning 2020-05-20 09:31:50 -05:00
Dana Robinson
0585e6fb34 Fixed stack and frame size warnings. Not complete, but fixes most of
the easier cases.
2020-05-20 09:31:50 -05:00
Allen Byrne
e54dcb1609 Correct standalone function attributes 2020-05-20 09:31:50 -05:00
Allen Byrne
f59dfcb711 Standalone should not use import/export attributes 2020-05-20 09:31:50 -05:00
Dana Robinson
3e6a192e9c Squashed commit of the token_refactoring branch: 2020-05-20 09:31:50 -05:00
Allen Byrne
6b106b2cab HDFFV-11001 need to qualify all by parallel or serial types 2020-05-20 09:20:26 -05:00
Allen Byrne
6682c717e2 HDFFV-11001 Add fine control over testing 2020-05-20 09:20:26 -05:00
Allen Byrne
16245b0440 Update tools hid_t declarations with H5I_INVALID_HID 2020-05-20 09:20:26 -05:00
Allen Byrne
738b025b3e io_timer.c uses a parallel lib function 2020-05-20 09:20:25 -05:00
Allen Byrne
d915fa7f07 Fix standalone compile issues 2020-05-20 09:20:25 -05:00
kmu
156bc312ed fix test assert fail error 2020-05-20 09:20:25 -05:00
kmu
fd374fb234 address problems from comments 2020-05-20 09:20:25 -05:00
kmu
95e509db46 fix and address comments 2020-05-20 09:20:25 -05:00
kmu
271bce5b10 remove unnecessary check macro 2020-05-20 09:20:25 -05:00
kmu
1d46e82317 fix intel compile warnings 2020-05-20 09:20:25 -05:00
kmu
fb8f955a73 Revert "fix warnings from Intel compiler"
This reverts commit 8b9338ab57.
2020-05-20 09:20:24 -05:00
kmu
9d8fb46a2c Revert "fix issues from previous PR comments"
This reverts commit d242a900f4.
2020-05-20 09:20:24 -05:00
kmu
f2028c7568 Revert "using a different MACRO"
This reverts commit fc61b7a9f3.
2020-05-20 09:20:24 -05:00
kmu
9a3a13cacb using a different MACRO 2020-05-20 09:20:23 -05:00
kmu
bb53a566e8 fix issues from previous PR comments 2020-05-20 09:20:23 -05:00
kmu
6725222332 fix warnings from Intel compiler 2020-05-20 09:20:23 -05:00
Quincey Koziol
d1d4635550 Small changes from the token_refactoring branch, to reduce the delta to develop 2020-05-20 09:20:23 -05:00
Jordan Henderson
295185f368 Fix issue in h5dump where reference objects weren't being destroyed 2020-05-20 09:20:22 -05:00