Commit Graph

1920 Commits

Author SHA1 Message Date
Dana Robinson
5a61eb24af Brings Mirror VFD to 1.10 from develop 2020-08-14 16:15:44 -07:00
Dana Robinson
7bca2f04a4 Brings splitter VFD from develop 2020-08-14 14:51:53 -07:00
Dana Robinson
039213d919 Brings file locking changes from develop 2020-08-14 12:35:07 -07:00
Allen Byrne
4e65a43f14 Spelling 2020-08-13 06:24:45 -05:00
Allen Byrne
e70fee7f36 HDFFV-11127 - force RTLD_LOCAL in dlopen 2020-08-12 16:19:55 -05:00
Dana Robinson
98ca520f55 Brings HDFFV-11027 H5S_NO_CLASS fix to 1.10 from develop 2020-08-11 09:48:47 -07:00
Binh-Minh Ribler
a324025e00 Fixed typo 2020-08-04 12:06:45 -05:00
Binh-Minh Ribler
068fc878c3 Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
Description:
    When a buffer overflow occurred because a name length was corrupted
    and became very large, h5dump produced a segfault on one file and a
    memcpy parameter overlap on another file.  This commit added checks
    that detect a read pass the end of the buffer to prevent these error
    conditions.
Platforms tested:
    Linux/64 (jelly)
2020-08-03 12:48:58 -05:00
Allen Byrne
7ff2d27e5b Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '475120abfb493098e907fe40073260f48b35d15d':
  Supply the appropriate file pointer to H5T_patch_vlen_file() without H5F_VOL_OBJ from develop branch.
  Merge pull request #2693 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop
2020-07-29 06:32:18 -05:00
Allen Byrne
099c7242fb Merge from dev of tools changes 2020-07-22 15:03:22 -05:00
Vailin Choi
ccf4a92ec6 Merge pull request #2693 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop
* commit '3023b34272cc6ada84aebfa7441a6a55afa3621c':
  Update MANIFEST. Add new test to Cmake.
  Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
2020-07-21 12:57:12 -05:00
Allen Byrne
b0445792fb CMake updates:
Add build folder as Include for generated files
Add install option for copying Fortran mod files to include folder
Add PRI defines to win32defs file
Exclude mingw from extra flags
2020-07-15 11:27:52 -05:00
Larry Knox
56a4cd641a Merge pull request #2679 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit 'c0702f601eb4e0b4116a7ed02999746c20420cad':
  Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for junit tests on Macs.
  Merge pull request #2667 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
  Merge pull request #2670 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
2020-07-07 16:28:10 -05:00
Larry Knox
c6f2205abe Merge pull request #2670 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'fc69de0e8ae30e80c1c3c542b156226a75444525':
  Lib files needed are now copied to a subdirectory in the java/test directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
2020-07-06 14:21:53 -05:00
Binh-Minh Ribler
bf3ef96e9d Fix HDFFV-10591
Description:
    h52gif produced a segfault when a buffer overflow occurred because
    the data size was corrupted and became very large.  This commit added
    a check on the data size against the buffer size to prevent the segfault.
    It also added error reporting to h52gif to display an error message
    instead of silently exiting when the failure occurred.
Platforms tested:
    Linux/64 (jelly)
2020-07-05 16:15:28 -05:00
Dana Robinson
2477b60145 Removed trailing whitespace from source files. 2020-05-26 13:07:43 -07:00
Dana Robinson
fd404f711b Added a RELEASE.txt note for the 0-size dataset fix. 2020-05-20 09:04:10 -07:00
Allen Byrne
0e56de63a7 OESS-65 Fix packaging 2020-05-08 11:04:59 -05:00
Dana Robinson
7550712800 Merged HDFFV-10792 parallel compression fix from develop.
This was a manual cherry pick.
2020-04-30 00:11:23 -07:00
Allen Byrne
1acccabdb2 Correct cmake version in text 2020-04-27 15:00:09 -05:00
Allen Byrne
4164dc2738 OESS-65 replace szip with aec szip 2020-04-27 13:29:43 -05:00
hdftest
489f46b5be Snapshot version 1.10 release 7 (snap0)
Update version to 1.10.7-1
2020-04-26 18:08:58 -05:00
Allen Byrne
f502d9f7fb TRILAB-192 - merge changes from develop
Single source, config files, for warnings for both autotools and CMake.
Update CMake libraries, tools, tests to use correct flags.
2020-04-07 09:52:09 -05:00
Allen Byrne
afe489977c Update release note for CMake warnings 2020-04-03 13:00:31 -05:00
Allen Byrne
de6d87dc14 Correct extra flags and merge TRILAB-24 2020-04-01 11:49:42 -05:00
Allen Byrne
944cbb9400 TRILAB-192 merging warnings changes from develop 2020-03-30 13:10:36 -05:00
Allen Byrne
561af68242 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '42106363903e7a7d4a0c2cd1b38aad9a54f2eeff':
  Fixed configure issue when building HDF5 with NAG Fortran 7.0.
  Fixed issue building HDF5 with NAG Fortran 7.0.
  revert type cast
  Merge pull request #2244 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop
2020-03-01 09:24:19 -06:00
M. Scot Breitenfeld
276c4fdbcc Fixed configure issue when building HDF5 with NAG Fortran 7.0.
HDF5 now accounts for the addition of half-precision floating-point
in NAG 7.0 with a KIND=16.
2020-02-28 16:42:15 -06:00
Allen Byrne
efcdbf2e38 Fix gif2h5 tool build on windows 2020-02-28 09:32:49 -06:00
Allen Byrne
467b5d565c Merge CMake and tools changes from develop 2020-02-27 16:54:52 -06:00
M. Scot Breitenfeld
c9c7c13d94 update HDFFV-11029 2020-02-18 17:15:48 -06:00
Allen Byrne
4ec2df9ac0 Merge from dev, sanitizer, fortran, warnings and tools ids 2020-02-11 14:28:56 -06:00
Muqun Yang
04d4d9c93a HDFFV-11014, fix the h5repack issue that misses a few attributes during the repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt. 2020-02-10 14:45:21 -06:00
Allen Byrne
4ef9c81048 Added new CMake options for tests 2020-01-19 07:56:14 -06:00
Larry Knox
ce5c3db14e Update HISTORY-1_10.txt with RELEASE.txt from HDF5 1.10.6 release. 2019-12-26 09:53:55 -06:00
Allen Byrne
0d7b7a50ae Add missing note 2019-12-19 16:12:15 -06:00
Larry Knox
b85582098c Update version for HDF5_1_10 2019-12-11 13:15:44 -06:00
Chris Hogan
13e6094eda Latest date first in RELEASE.txt 2019-12-10 14:28:55 -06:00
Chris Hogan
facea30c8d Update RELEASE.txt with performance improvements 2019-12-10 14:16:20 -06:00
Chris Hogan
8cd58add98 Add fix of Jira 10934 to RELEASE.txt 2019-12-09 11:00:21 -06:00
Allen Byrne
ec145b88fa HDFFV-10962 add VS2019 support 2019-11-18 15:42:21 -06:00
Larry Knox
e7ef8cd945 Snapshot version 1.10 release 6 (snap3)
Update version to 1.10.6-snap4
2019-11-12 09:32:59 -06:00
Allen Byrne
07a1483b16 HDFFV-10408,10918 add note 2019-10-02 13:10:14 -05:00
Allen Byrne
1d147ef21f Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit 'fb05ff4c4a392d38a45e79fe461bc690dea6f325':
  Added MPICH_SKIP_MPICXX and OMPI_SKIP_CXX to H5public.h to avoid inadvertant linking to the deprecated MPI C++ wrappers. Fixes HDFFV-10893.
2019-09-19 08:48:02 -05:00
Dana Robinson
fb05ff4c4a Merge pull request #1928 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:1_10_minor_pr to hdf5_1_10
* commit '71c80267ba0db1c1b439d39e4bd7c27b82510c92':
  Added MPICH_SKIP_MPICXX and OMPI_SKIP_CXX to H5public.h to avoid inadvertant linking to the deprecated MPI C++ wrappers. Fixes HDFFV-10893.
2019-09-18 15:02:04 -05:00
Allen Byrne
efaf7dea67 HDFFV-10903 merge dev changes to 1.10 2019-09-18 12:27:15 -05:00
Allen Byrne
2a6053435c Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '2ca63e3890ebdaee7dc835e5d995ff03a182940f':
  Snapshot version 1.10 release 6 (snap2)     Update version to 1.10.6-snap3
2019-09-18 08:45:47 -05:00
hdftest
f93f47c9f7 Merge branch 'hdf5_1_10' of ssh://bitbucket.hdfgroup.org:7999/~hdftest/hdf5_hft into hdf5_1_10 2019-09-17 15:17:57 -05:00
hdftest
ab45fbc81b Snapshot version 1.10 release 6 (snap2)
Update version to 1.10.6-snap3
2019-09-17 15:16:24 -05:00
Allen Byrne
7449e6a2c6 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '406890277cbe92be1d68721a6fa115441ab1a726':
  Fixed a bug where we incorrectly pass a lock struct to fcntl for file locking instead of a pointer. (HDFFV-10892)
2019-09-17 14:43:30 -05:00