Commit Graph

165 Commits

Author SHA1 Message Date
David Young
0d6e025888 Merge pull request #2320 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-2 to develop
* commit 'a5f236e83bdd29e660a55c5577a69a3809605cda':
  Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
2020-01-29 13:51:27 -06:00
David Young
1b49ccd7fa Merge pull request #2321 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-3 to develop
* commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a':
  testpar/t_2Gio.c: Fix a typo that I think was introduced by a         previous warnings PR.  An array element was assigned to         itself---shape[2]Â =Â shape[2];---instead of being assigned to         chunk[2].
2020-01-29 13:51:10 -06:00
David Young
f19e06b59e testpar/t_2Gio.c: Fix a typo that I think was introduced by a
previous warnings PR.  An array element was assigned to
        itself---shape[2]Â =Â shape[2];---instead of being assigned to
        chunk[2].

fortran/src/H5Pf.c: move conditional compilation controlled by
        H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

fortran/src/H5match_types.c: put a variable's declaration under the same
        conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
        use.

For now, skip compilation of some unused debug dump routines in the JNI.
While I'm in the JNI, delete a set-but-unused variable.

src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
        so that it's not declared but unused or vice versa.

test/cache_common.h: add an #include in to get some symbols we need to
        avoid implicit declaration warnings.

test/dsets.c: use a more conventional conditional-compilation syntax.

test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
        variables before use.

test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
        instead of `int **`.

testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
        "equal to 0?" is the question not "is false?"  Repair some
        indentation while I'm here.

testpar/testpar.h: repair misaligned line-continuation backslashes in a
        macro that probably should be a function so that we don't have
        to fiddle with the line continuation to begin with.

tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
        enums.

tools/test/perform/pio_engine.c: the compiler fusses if you cast a
        function call returning double directly to off_t.  It's ok if
        you cast a variable that's a double to off_t, however.  Write
        and use a new function, sqrto(), to avoid the cast warnings.
2020-01-29 11:44:39 -06:00
David Young
a5f236e83b Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
Reduce gratuitous casts---e.g., (size_t)1.

Use the right format string for a pointer.

In the H5C sanity checks, change a "size increase" variable from ssize_t
(too narrow) to int64_t (wide enough).

Parenthesize every appearance of `storage` in the macro
`H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an
expression like &sc and it works properly.

Disallow re-assignment of the `dset` parameter to H5D__chunk_init()
because it helped assure me that it's safe to replace the repeating
expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout.

Replace lengthy expressions such as
`&dset->shared->layout.storage.u.chunk` with `sc` throughout several
functions in H5Dchunk.c ISTR that the compiler warned that `sc` was
declared but unused in a couple of functions, and then I found that `sc`
could be used in many places.  Maybe the disused `sc` appeared because a
bunch of code was copied and pasted, I don't know.  Anyway, it's a lot
tighter code now that I use `sc`.

In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete()
I actually expand `sc` and another temporary variable, `pline`,
because they're used only in !defined(NDEBUG) code.  This squashes
unused-variable warnings in the defined(NDEBUG) configuration.

Don't drop the `volatile` qualification with a cast in
tools/src/h5import/h5import.c.
2020-01-29 10:47:30 -06:00
Jordan Henderson
e41f671d2f Introduce new H5VL _by_value routines 2020-01-28 18:18:38 -06:00
Dana Robinson
a92c735c9b Squashed commit of the token_refactoring branch: 2020-01-16 13:29:34 -08:00
Allen Byrne
23f813026f HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3 2019-12-20 13:23:48 -06:00
Allen Byrne
7535f5a728 Fix java include, h5watch and remove clang tool. 2019-12-10 13:55:34 -06:00
Allen Byrne
fce2a31dc5 Address compile warnings 2019-12-06 13:55:34 -06:00
Allen Byrne
cf61098fa6 Fix compile errors - mostly in jni 2019-12-06 12:57:38 -06:00
Allen Byrne
915184104b Add missing javadoc for new arg 2019-12-03 16:37:40 -06:00
Allen Byrne
12fd139e90 Update reference files and fix int as string 2019-12-03 14:43:05 -06:00
Allen Byrne
6b927a773c HDFFV-10876 Update h5dump and h5ls for new ref api. 2019-11-07 09:49:11 -06:00
Jordan Henderson
93f509a2f2 Fix various Java issues when deprecated symbols are disabled 2019-10-10 13:37:18 -05:00
Allen Byrne
b2f52d0b07 Update versioning to next major version 2019-09-25 17:28:17 -05:00
Larry Knox
b04e1ad058 Update develop branch version to 1.13.0 after creation of hdf5_1_12
branch.
2019-09-25 16:21:23 -05:00
Allen Byrne
adce9e7f4e HDFFV-10903 - fix VFD constants in JNI 2019-09-17 10:30:04 -05:00
Allen Byrne
e20331651e revert as CHECK will first check for exception 2019-09-10 14:19:29 -05:00
Allen Byrne
afb07f9b39 Clear exception for getting JNI string to clear the exception 2019-09-10 13:47:24 -05:00
Allen Byrne
3e816bd089 Add statement for label if code unimplemented 2019-09-05 15:49:57 -05:00
Allen Byrne
60cc470a35 Fix unused var 2019-09-05 15:21:02 -05:00
Allen Byrne
3467de59f8 Correct label and var names 2019-09-05 14:57:35 -05:00
Allen Byrne
dcab85c83b Add back missing java implementation 2019-09-05 14:35:33 -05:00
Allen Byrne
09d13b3c13 OESS-29 Fix HD prefix in perform and enable test compile 2019-08-27 16:49:10 -05:00
Dana Robinson
8c40dab59e Untangle #ifdef mess in ROS3 code. 2019-08-19 18:02:47 -07:00
Allen Byrne
935f27c1b8 HDFFV-10887 Implement requested functions 2019-08-19 11:58:52 -05:00
Larry Knox
8008294578 Squashed commit of the following:
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
2019-07-25 11:47:12 -05:00
Allen Byrne
1878e68558 Move before null check 2019-07-08 13:52:05 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Dana Robinson
2bd041f878 Added H5Fdelete call and VOL support (but no VFD/native implementation). 2019-06-11 09:04:23 -07:00
Allen Byrne
d3a6a9ed8f Merge pull request #1715 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '1ecce0e9bbc07cb3eb6f6bc1fca9d42c9e9c8176':
  Fix minor issues
  Update macro
  Java formatting of args
2019-06-05 15:06:53 -05:00
Dana Robinson
a18727bc77 Added a VOL initialization property list type. 2019-06-05 04:34:36 -07:00
Allen Byrne
1ecce0e9bb Fix minor issues 2019-06-03 10:45:20 -05:00
Allen Byrne
748da4d3e2 Java formatting of args 2019-05-30 15:56:02 -05:00
hdftest
1cec61a775 Snapshot version 1.11 release 5.
Update version to 1.11.6.
2019-05-02 10:42:53 -05:00
Jordan Henderson
0a73ce19a4 Fix Java JUnit-TestH5P failure on 32-bit arch 2019-04-30 15:32:37 -05:00
Allen Byrne
6bf109d1ae Fix java for new H5Fget_info function 2019-04-15 11:19:29 -05:00
Quincey Koziol
d7e1464058 Add C++, Java, and FORTRAN wrappers and tests for H5Fget_fileno 2019-04-13 22:58:16 -05:00
Vailin Choi
2886cd9e45 HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.
This also addresses HDFFV-10255: H5Sencode/decode performance issue.
2019-04-06 16:55:14 -05:00
Vailin Choi
0073f19897 Set V112 as the latest format and extend the arrays of version bounds. 2019-04-04 16:29:37 -05:00
hdftest
7a0ac416c9 Snapshot version 1.11 release 4.
Update version to 1.11.5.
2019-04-01 16:11:28 -05:00
Jordan Henderson
8a4371f69a Minor fix in h5str_sprintf for NULL region references 2019-02-21 22:39:57 -06:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00
Jordan Henderson
3acd486b83 Fixes for JNI updates 2019-02-12 11:56:42 -06:00
Jordan Henderson
cc6a61215e Re-write of Java JNI error handling 2019-02-11 10:58:58 -06:00
Allen Byrne
62277207a4 Java html fix and cmake update 2019-01-24 15:56:42 -06:00
Allen Byrne
9b0281736c Fix deprecated H5Pget_version 2019-01-09 12:55:31 -06:00
Allen Byrne
28d5d987b5 HDFFV-10664 add missing function and check for restriction 2019-01-04 12:52:37 -06:00
Allen Byrne
c3cad8e5f3 HDFFV-10664 minimized dataset headers for java interface 2018-12-31 16:34:07 -06:00
Allen Byrne
f9e9c1ad0e HDFFV-10664 Add new functions and constants to java interface 2018-12-19 12:59:05 -06:00