Bug fix
Description:
Add ifdef around most of this file, to protect it from the Intel 7.1 C
compiler which seems to have bugs in its -MG flag for creating dependency
information.
Platforms tested:
Linux IA64 (titan)
too obscure to require testing on other platforms
Feature
Description:
Added option -showconfig which Shows the HDF5 library configuration summary
Platforms tested:
No h5committest test which does not test these tools.
Tested in eirene by hand.
Misc. update:
Bug fix
Description:
Variable length strings and sequences with NULL pointers were not handled
by library, causing problems access the data. This also affected fill values
for variable-length datatypes.
Solution:
Address the issues in the library by detecting NULL sequences/strings
and avoid trying to convert them.
Patched up dumper to display NULL sequences/strings.
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
bug fix.
Description:
It sometimes complained of wrong number of argument to test.
This happened when more than 1 tool are redeployed.
The problem is due to an unquoted variable expanded into
multiple strings, confusing the test command.
Fixed by putting quotes around it.
Platforms tested:
only tested in verbena since it is trivial.
Fix bug.
Description:
Wrong parameter in subroutine call.
Note: this only affects '--xml', and only affects the value of
the fill value that is reported.
Solution:
put correct parameter in subroutine call
Platforms tested:
verbena
Misc. update:
Purpose: Maintenance
Description: h5createU8 utility was the old h5import utiltity.
It was supposed to be gone for 1.6.1 but I forgot to delete
it before the release. I am doing it now.
Solution:
Platforms tested: arabica
Misc. update:
bug fix
Description:
On windows debug/debugdll; somehow: a crash happened by free() function
although that string is "allocated".
Make some efforts to fix without success.
Suspect a compiler bug.
Solution:
Use #ifdef WIN32 #endif comment out that free function for the time being.
Hopefully h5dump debug version is not used.
Platforms tested:
windows 2000, linux 2.4(no need for more platforms because of win-specified).
Misc. update:
Bug fixes and code cleanup
Description:
Corrected output of array separator when vlen separator was needed.
datatypes.
Parts of formatting cleanup to greatly reduce the amount of trailing
whitespace emitted in output.
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
Bug fixes and code cleanup
Description:
Changes to h5dump code:
- Dump shared datatypes for any class of datatype, not just compound
datatypes.
- Cleaned up formatting to greatly reduce the amount of trailing
whitespace emitted in output. Also removed some spurious blank
lines from named datatype output.
Added code to generate named datatype attribute test file.
Added tests for dumping named datatypes in attributes for both DDL and
XML output.
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
bug fix
Description:
h5diff would incur a segmentation fault in Alpha clusters when
the percentage option is used. This was due to memory aliagment
issue when the options variable is declared as a local variable
in main().
Moved the declaration to a global declaration.
Platforms tested:
"h5committested"
And tested at cluster QT of SNL.
Misc. update:
Code cleanup
Description:
Remove various "fixtype" routines which duplicate (and actually pre-date)
the functionality in H5Tget_native_type in favor of having the tools call
H5Tget_native_type(). This provides the same functionality (actually better
functionality, since the old "fixtype" routines didn't handle alignment of
compound fields correctly) and reduces the amount of code to maintain.
Add additional tests to dump out a "complex" compound datatype which
exercises more code in the library for aligning compound fields correctly.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
bug fix
Description:
On windows, rindex is not supported. strrchr is used instead.
Solution:
Platforms tested:
linux 2.4, windows 2000
(since the change is minimal and three other platforms have been used to
test for 1.7 branch, so no needs to test more).
Misc. update:
1. Address Bug 888
2. Update h5dump xml to 1.6
Description:
This is an omnibus update to the h5dump tool.
1. Bug 888: Added '-A', suppress data in dataset, but give values of attr.
2. Many changes to update the XML output. See:
http://hdf.ncsa.uiuc.edu/RFC/XMLSchema/
3. The XML dumper tests have been split off. The standard 'make check'
no longer runs the XML tests.
'make check-xml' runs the XML tests manually. (Some tests
may fail on some platforms, e.g., on 64bit.)
'make check-all' runs regular and then xml tests.
Solution:
Platforms tested:
verbena, arabica, copper (64bit)
Misc. update:
MANIFEST updated.
Purpose:
Bug Fix
Description:
LIBTOOLS macro was being used but not defined.
Solution:
Removed the LIBTOOLS macro as it wasn't necessary
Platforms tested:
Modi4 (small fix)
Misc. update:
Bug Fix
Description:
The SUBDIRS macro is now defined as "" in the config/commence.in
file. We shouldn't have definitions of this macro before the
inclusion of config/commence.in.
Solution:
Placed all definitions of SUBDIRS after config/commence.in inclusion.
Platforms tested:
Modi4 (Small fix yet again).
Misc. update:
Purpose:
Bug Fix
Description:
Changes needed to make "pmake" work on Modi4.
Solution:
Needed to add some null macro defines in the commence.in files.
Needed to remove a dependence on LIBH5TEST in the fortran make
since LIBH5TEST isn't used in the fortran stuff.
Platforms tested:
Modi4 (small change)
Misc. update:
Description: H5Tget_native_type fails for multiple kinds of datatype on Cray; it fails
fix-length string type, too.
Platforms tested: Cray, h5committest
Bug fix
Description:
h5cc was removed prematurely in "make clean". Moved it to be
removed in "make distclean" only.
Solution:
Platforms tested:
COpper.
Misc. update:
Bug fix/new feature
Description:
Teach h5dump/h5ls to display variable-length datatypes correctly.
Change "raw byte" output of array elements from "0xde8141b1a818" to
"de:81:41:b1:a8:18" so that it's easier for users to read.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
Misc. update:
Patch provided by Robb Matzke (matzke@llnl.gov)
Bug fix
Description:
The output from the modification time is highly system dependent, so
remove it from the h5ls output before comparing file with diff.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
Bug fix
Description:
The output from the modification time is highly system dependent, so
remove it from the h5ls output before comparing file with diff.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
Code cleanup/new features.
Description:
Clean up whitespace & formatting.
Make the -S (simple) output display a dataset's modification time in UTC
rather than local timezone.
Display variable-length datatype information.
Simplified & enhanced bitfield datatype information displayed.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
Cleanup
Description:
h5dumpgentest is already included in TEST_PROGS. Removed its old
entry in PROGS.
Platforms tested:
Only in Copper since this is trivial.
Misc. update:
added writing more attributes to one test file
Description:
added the writing of 3D attributes to one test file of h5ls
Solution:
Platforms tested:
Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)
Misc. update:
Purpose:
Bug Fix
Description:
The flags for the linker on MacOS X were invalid.
Solution:
If this is a darwin platform (MacOS X), then don't specify the
runtime linker flags.
Platforms tested:
MacOSX (since it only affects it...)
Misc. update:
Minor corrections to match the man pages. Code provided by Pankaj.
Description:
* do not accept more than 30 file names
* corrected error messages.
Solution:
Platforms tested:
Tested on verbena.
Already tested on several platforms before integration.
Misc. update:
Bug fix
Description:
This would sometimes coredump in machines like PSC Alpha cluster
or linux icc if -g is not used.
Solution:
The real problem was because char string arrays were declared
without including space for the null terminator. E.g.,
char s[5][2]={ "s1", "s2", ...}
is not correct. Increased the size and also need to change
the H5S... definitions too.
Platforms tested:
"h5committested"--the h5dumpgentest passed without problem though
it failed in Fortran but that is a current known problem.
Tested in verbena using icc and also in PSC's cluster.
Misc. update:
Can't find this error in the v1.5 know problem list.
bug fix
Description:
unsigned integers were not printed out correctly
Solution:
added %u and %lu to the list of formats
Platforms tested:
Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)
Misc. update:
h5diff support for long_long
Description:
added h5diff support for long_long;
No automatic test was added because
it seems that the printf format of long_long is slightly different in Linux and IRIX(modi4),
because the diff command complained about a difference in the 2 test files for long_long;
visually, it seems that in IRIX an extra space is added after the print (or maybe it is
just me that is seeing extra spaces :=)
this test is test 5.8, commented in testh5diff.sh
Platforms tested:
Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)
Misc. update:
Bug Fix
Description:
The order the libraries are included in the compilation line is very
important.
Solution:
Need to specify the libraries in the order that they are given. If
we're building the application staticly, then use the static HDF5
library.
Platforms tested:
Modi4
Verbena
Arabica
Misc. update:
bug fix
Description:
the signed / unsigned comparison was not properly handled.
the fixtype function sets the sign for the memory type the same sign as found on disk
and the array_diff function only handled signed cases
Solution:
addded for each INTEGER size type an OR condition with the unsigned version
if the datatypes have different signs , comparison is NOT supported
Platforms tested:
Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)
Misc. update:
bug fix
Description:
Not all echo commands honors the '-n' option. In those cases,
the output look weired though recognizable.
Solution:
Eliminated the use of -n option. A better fix would be having
configure to set the proper use of the echo command.
Platforms tested:
only on sasn100 (a sun frontend of Janus).
No committest since this is just a simple shell script change.
Bug Fix
Description:
Two things:
- static libraries may depend upon the HDF5 library. We should
put them before the HDF5 library on the commandline instead of
afterwards to avoid conflict.
- the CFLAGS weren't being used during linking. This was causing
problems on Arabica where the flags are important to
distinguish between building a 32-bit and 64-bit application.
Solution:
- Added logic so that it catches the static libraries and puts them
before the hdf5 library on the command line. WARNING: This may not
work in all situations...but it should be okay for the good
majority.
- added the CFLAGS macro to the commandline...
Platforms tested:
LInux (Colonelk)
Arabica
Modi4 (Parallel)
(Small changes so doesn't need full h5committesting...)
Misc. update:
