Commit Graph

157 Commits

Author SHA1 Message Date
Quincey Koziol
c6e4e53546 Update clang config (#473)
* Update clang config to put H5E_BEGIN_TRY / H5E_END_TRY on separate lines, empty C++ methods on separate lines, understand that ALL_MEMBERS / UNIQUE_MEMBERS are foreach macros, and properly skip the 'config' directory in the find command without emiting a warning

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-03-17 10:25:39 -05:00
Sean McBride
d7b40604ef Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)
* Fixed all clang-tidy bugprone-suspicious-string-compare warnings

This change was generated entirely by clang-tidy itself.

* Reformat code with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-03-10 12:42:35 -06:00
Larry Knox
4819f89d3f Update license url (#332)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
2021-02-17 08:52:04 -06:00
Allen Byrne
6db183590f develop revert source to clang-format version 11 (#293)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction
2021-01-29 06:55:18 -06:00
Quincey Koziol
5ff09ae971 Basic alignment with async branch (#115)
* Basic alignment with async branch - trivial changes to reduce clutter in overall diff.

* Update minor error code to reflect change within library

* Update the error output to match library
2020-11-23 10:18:26 -06:00
Dana Robinson
ca3659a014 HD prefix updates in src/ and test/
Adds missing HD prefixes to API calls in src and test.

Adds some extra processing to bin/checkposix to keep the noise
levels down when running the script (not comprehensive).
2020-10-23 17:13:05 -07:00
Allen Byrne
b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
Dana Robinson
a92c735c9b Squashed commit of the token_refactoring branch: 2020-01-16 13:29:34 -08:00
Quincey Koziol
0225e6d596 Small changes from the token_refactoring branch, to reduce the delta to develop 2020-01-03 22:16:38 -06:00
Dana Robinson
1ad02a4459 Yanked -Wc++-compat from the flags used to build the C library in both
the Autotools and CMake.
2019-12-04 00:49:52 -08:00
Jerome Soumagne
c13078a0ed Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim() 2019-10-08 14:30:24 -05:00
Dana Robinson
78fda91295 Fixed some exit calls. 2019-09-06 18:06:26 -07:00
Allen Byrne
64e6665b54 Add HD prefix to tests 2019-08-15 16:46:15 -05:00
Dana Robinson
5b6bd7c922 Added the map (H5M) API 2019-08-13 01:36:42 -07:00
Allen Byrne
9f12d83975 Cleanup HD prefix 2019-08-05 16:57:27 -05:00
Quincey Koziol
605889fde8 Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, along
with tests and minor cleanups and refactorings.
2019-07-30 15:34:53 -05:00
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Jerome Soumagne
552cc1b4a4 Fix memory leak in objcopy test after H5Aread of vlen data 2019-06-19 14:03:21 -05:00
Vailin Choi
8d72e5e3e0 Fix for HDFFV-10800 H5Ocopy failure:
The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format
version bounds array for fill value message, should be version 3 not 2.
2019-06-12 12:55:12 -05:00
Quincey Koziol
fc945999d0 Merge remote-tracking branch 'origin/develop' into env_vol_load 2019-04-03 17:27:10 -05:00
Dana Robinson
97cdcc47e4 Used the H5_INC_ENUM macro to squash enum value increment warnings. 2019-03-21 01:15:09 -07:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable.
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
2019-03-09 21:41:38 -06:00
Quincey Koziol
b5305b25a6 Align develop with incoming hyperslab_updates branch changes. 2019-02-12 21:51:15 -06:00
Quincey Koziol
92300f954f Corrected comment in src/H5VLint.c, fixed pass-through info size in
src/H5VLpassthru.c, switched to stashing VOL connector ID & info in
API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and
src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work
with 'check-vfd' (and 'check-vol' again).
2019-01-05 23:06:45 -06:00
Quincey Koziol
0df6e44a6e Squashed commit of private branch changes to support stackable VOL plugins.
modified:   test/dsets.c
2018-10-24 23:52:47 -05:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Dana Robinson
67a126c7ba Normalization with vol_integration (test code and H5Xtest.c) 2018-09-20 10:40:51 -07:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Dana Robinson
02039e0a91 Minor warning cleanup while working on VOL issues. 2018-04-06 00:11:18 -07:00
Binh-Minh Ribler
39e3da7563 Improving tests
Description:
    - Added test for version bounds with nested datatypes
    - Added script for additional version bound test in h5repack
    - Cleaned up tests for consistency
    - Removed extra included header files
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (moohan)
    Darwin (osx1010test)
2018-02-17 16:18:37 -06:00
Allen Byrne
41d541f1c2 More includes cleanup 2018-02-14 11:14:26 -06:00
Binh-Minh Ribler
0a61befddc Additional tests
Description:
    - Revised and add more variety to version bound tests per review
    - Revised gen_bounds.c per review
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-02-13 11:05:08 -06:00
Vailin Choi
980d5b4266 Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiers
Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
2017-06-10 19:40:19 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol
5df52404bc Misc. small cleanups to sync against incoming page buffering changes. 2017-03-02 06:24:46 -08:00
Frank Willmore
b2948d9f97 Merge pull request #100 in HDFFV/hdf5 from ~FRANK.WILLMORE/hdf5:HDFFV-8882-replace-numeric-exit-code-with to develop
* commit '526bcc242d03a6fc4fd28d3a0f68cc31f4f2a850':
  Changes to be committed: 	modified:   bittests.c 	modified:   cmpd_dset.c 	modified:   dsets.c 	modified:   dt_arith.c 	modified:   dtypes.c 	modified:   extend.c 	modified:   fillval.c 	modified:   filter_fail.c 	modified:   flush1.c 	modified:   gen_cross.c 	modified:   hyperslab.c 	modified:   istore.c 	modified:   links.c 	modified:   links_env.c 	modified:   objcopy.c 	modified:   plugin.c 	modified:   tcheck_version.c 	modified:   unlink.c 	modified:   unregister.c
2016-11-03 16:28:29 -05:00
Quincey Koziol
84787e3085 Uncomment line in test/objcopy.c, clean up whitespace and POSIX call wrapping
in tools code.
2016-11-03 08:46:53 -07:00
Frank.Willmore
526bcc242d Changes to be committed:
modified:   bittests.c
	modified:   cmpd_dset.c
	modified:   dsets.c
	modified:   dt_arith.c
	modified:   dtypes.c
	modified:   extend.c
	modified:   fillval.c
	modified:   filter_fail.c
	modified:   flush1.c
	modified:   gen_cross.c
	modified:   hyperslab.c
	modified:   istore.c
	modified:   links.c
	modified:   links_env.c
	modified:   objcopy.c
	modified:   plugin.c
	modified:   tcheck_version.c
	modified:   unlink.c
	modified:   unregister.c

Minor fixes to replace numeric exit codes with MACRO declarations. Not all codes found were boolean, and those cases were not changed.
2016-10-25 09:53:44 -05:00
Vailin Choi
c8af99f530 [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute which is a compound datatype consisting of
a variable length string.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
2016-08-19 15:58:16 -05:00
Allen Byrne
bac4cf8e92 [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h type headers. Also remove duplicated includes when h5private.h is used. 2016-08-01 12:38:34 -05:00
Quincey Koziol
b2d6d68d5d [svn-r29770] Description:
Bring 'none' chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-23 00:03:00 -05:00
Quincey Koziol
f7aff7d5cf [svn-r29738] Description:
Bring "single" chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-18 23:21:12 -05:00
Quincey Koziol
ce8905cc90 [svn-r29718] Description:
Bring changes from revise_chunks branch to trunk

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel, and production
    (h5committest forthcoming)
2016-04-16 03:50:45 -05:00
Quincey Koziol
3cd705e56e [svn-r29612] Description:
Bring updated layout and EFL property comparisons and new "latest format"
flags from revise_chunks branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-03 03:48:50 -05:00
Quincey Koziol
9d2178ab88 [svn-r29607] Description:
Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
    (h5committest forthcoming)
2016-04-02 04:39:32 -05:00
Dana Robinson
8bbdc947c4 [svn-r28972] Removed option to clear file buffers from autotools, CMake, and library.
Buffers that will be written to disk will now always be cleared since
not doing this has huge security implications.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1
           serial autotools
           parallel autotools (MPICH 3.1.4)
           serial CMake
2016-01-26 16:26:12 -05:00
Quincey Koziol
f60170dac7 [svn-r28761] Description:
Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree
in the library and tests (and use of H5free_memory and H5Dvlen_reclaim).  Also
make H5Ocopy use a private version of H5Lexists, which doesn't internally
throw (and suppress) errors when an object (or the path to it) isn't found in
the destination.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-01 01:28:04 -05:00
Dana Robinson
0a00732c4d [svn-r28696] Minor normalization with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-17 01:31:27 -05:00
Jerome Soumagne
2094d86461 [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly and fix misuse of hbool_t in various places

Fix initialization of H5Pgcpl/ocpl structs in property decoding routines

Tested on:
    Linux/32 (jam)
    Linux/64 (platypus)
    Linux/PPC64 (ostrich)
    MacOSX/64 10.11
2015-10-20 01:28:17 -05:00