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Brings java wrapper updates from develop

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The wrappers compile but fail tests due to some missing develop
functionality
This commit is contained in:
Dana Robinson
2021-05-06 14:07:08 -07:00
parent 457b199a38
commit f2cb86499e
219 changed files with 9672 additions and 2742 deletions
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15
java/test/CMakeLists.txt
View File

@@ -23,16 +23,19 @@ set (HDF5_JAVA_TEST_SOURCES
TestH5Dparams
TestH5D
TestH5Dplist
TestH5Drw
TestH5Lparams
TestH5Lbasic
TestH5Lcreate
TestH5R
TestH5Rref
TestH5P
TestH5PData
TestH5Pfapl
TestH5Pvirtual
TestH5Plist
TestH5A
TestH5Arw
TestH5Oparams
TestH5Obasic
TestH5Ocreate
@@ -93,6 +96,12 @@ HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateL2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateO1.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateO2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_reg.h5" "${PROJECT_BINARY_DIR}/trefer_reg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_attr.h5" "${PROJECT_BINARY_DIR}/trefer_attr.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tdatareg.h5" "${PROJECT_BINARY_DIR}/tdatareg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tattrreg.h5" "${PROJECT_BINARY_DIR}/tattrreg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tintsattrs.h5" "${PROJECT_BINARY_DIR}/tintsattrs.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tfloatsattrs.h5" "${PROJECT_BINARY_DIR}/tfloatsattrs.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
add_custom_target(${HDF5_JAVA_TEST_LIB_TARGET}_files ALL COMMENT "Copying files needed by ${HDF5_JAVA_TEST_LIB_TARGET} tests" DEPENDS ${${HDF5_JAVA_TEST_LIB_TARGET}_files_list})
@@ -208,6 +217,12 @@ if (HDF5_TEST_JAVA AND HDF5_TEST_SERIAL)
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/${voltest}/h5ex_g_iterateL2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/${voltest}/h5ex_g_iterateO1.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/${voltest}/h5ex_g_iterateO2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_reg.h5" "${PROJECT_BINARY_DIR}/${voltest}/trefer_reg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_attr.h5" "${PROJECT_BINARY_DIR}/${voltest}/trefer_attr.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tdatareg.h5" "${PROJECT_BINARY_DIR}/${voltest}/tdatareg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tattrreg.h5" "${PROJECT_BINARY_DIR}/${voltest}/tattrreg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tintsattrs.h5" "${PROJECT_BINARY_DIR}/${voltest}/tintsattrs.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/tfloatsattrs.h5" "${PROJECT_BINARY_DIR}/${voltest}/tfloatsattrs.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
add_custom_target(${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files ALL COMMENT "Copying files needed by ${HDF5_JAVA_TEST_LIB_TARGET} tests" DEPENDS ${${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files_list})

3
java/test/Makefile.am
View File

@@ -52,11 +52,13 @@ noinst_JAVA = \
TestH5T.java \
TestH5Dparams.java \
TestH5D.java \
TestH5Drw.java \
TestH5Dplist.java \
TestH5Lparams.java \
TestH5Lbasic.java \
TestH5Lcreate.java \
TestH5R.java \
TestH5Rref.java \
TestH5P.java \
TestH5PData.java \
TestH5Pfapl.java \
@@ -65,6 +67,7 @@ noinst_JAVA = \
TestH5Pvirtual.java \
TestH5Plist.java \
TestH5A.java \
TestH5Arw.java \
TestH5Oparams.java \
TestH5Obasic.java \
TestH5Ocreate.java \

7
java/test/TestAll.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -23,12 +22,12 @@ import org.junit.runners.Suite;
TestH5Gbasic.class, TestH5G.class, TestH5Giterate.class,
TestH5Sbasic.class, TestH5S.class,
TestH5Tparams.class, TestH5Tbasic.class, TestH5T.class,
TestH5Dparams.class, TestH5D.class, TestH5Dplist.class,
TestH5Dparams.class, TestH5D.class, TestH5Dplist.class, TestH5Drw.class,
TestH5Lparams.class, TestH5Lbasic.class, TestH5Lcreate.class,
TestH5R.class,
TestH5R.class, TestH5Rref.class,
TestH5P.class, TestH5PData.class, TestH5Pfapl.class, TestH5Pvirtual.class, TestH5Plist.class,
TestH5Pfapls3.class, TestH5Pfaplhdfs.class,
TestH5A.class,
TestH5A.class, TestH5Arw.class,
TestH5Oparams.class, TestH5Obasic.class, TestH5Ocopy.class, TestH5Ocreate.class,
TestH5PL.class, TestH5Z.class
})

248
java/test/TestH5.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -32,6 +31,7 @@ import java.io.StreamTokenizer;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
@@ -47,22 +47,25 @@ import org.junit.rules.TestName;
*/
public class TestH5 {
@Rule public TestName testname = new TestName();
@Before
public void showTestName() {
System.out.print(testname.getMethodName());
}
@After
public void nextTestName() {
System.out.println();
}
private static final String H5_FILE = "testData.h5";
private static final String EXPORT_FILE = "testExport.txt";
private static final String H5_REGION_FILE = "trefer_reg.h5";
private static final String EXPORT_REGION_FILE = "testExportReg.txt";
private static final String H5_ATTR_FILE = "trefer_attr.h5";
private static final String EXPORT_ATTR_FILE = "testExportAttr.txt";
private static final String H5_DREG_FILE = "tdatareg.h5";
private static final String EXPORT_DREG_FILE = "testExportDReg.txt";
private static final String H5_AREG_FILE = "tattrreg.h5";
private static final String EXPORT_AREG_FILE = "testExportAReg.txt";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
private static final int DIM_BLKS = 36;
private static final int DIM_PNTS = 10;
private static final int DIM_ATTR = 12;
private static final int RANK = 2;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
private final void _deleteFile(String filename) {
@@ -78,7 +81,7 @@ public class TestH5 {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32LE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
@@ -115,22 +118,65 @@ public class TestH5 {
}
}
public final void _closeH5File() throws HDF5LibraryException {
private final void _closeH5File() {
if (H5did >= 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5dsid = -1;
H5did = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
H5dsid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
}
public void _openH5File(String filename, String dsetname) {
try {
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5._openH5file: " + err);
}
assertTrue("TestH5._openH5file: H5.H5Fopen: ", H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5._openH5file: " + err);
}
assertTrue("TestH5._openH5file: H5.H5Dopen: ", H5did >= 0);
try {
H5dsid = H5.H5Dget_space(H5did);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5._openH5file: " + err);
}
assertTrue("TestH5._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
}
public final void _deleteH5file() {
_closeH5File();
_deleteFile(H5_FILE);
}
@After
public void closeH5File() throws HDF5LibraryException {
_closeH5File();
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
System.out.println();
}
@Before
public void verifyCount()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
}
/**
* Test method for {@link hdf.hdf5lib.H5#J2C(int)}.
* NOTE:
@@ -374,8 +420,10 @@ public class TestH5 {
_closeH5File();
_openH5File(H5_FILE, "/dset");
try {
H5.H5export_dataset(EXPORT_FILE, H5_FILE, "/dset", 99);
H5.H5export_dataset(EXPORT_FILE, H5fid, "/dset", 99);
}
catch (HDF5LibraryException err) {
err.printStackTrace();
@@ -411,4 +459,168 @@ public class TestH5 {
}
_deleteH5file();
}
@Test
public void testH5export_region() {
int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108,
111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
int[] dset_indata = new int[DIM_BLKS+DIM_PNTS];
String objName = "/Dataset1";
_openH5File(H5_REGION_FILE, objName);
try {
H5.H5export_dataset(EXPORT_REGION_FILE, H5fid, objName, 99);
}
catch (HDF5LibraryException err) {
err.printStackTrace();
fail("H5export_dataset failed: " + err);
}
File file = new File(EXPORT_REGION_FILE);
try {
Reader reader = new FileReader(EXPORT_REGION_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
int indx = 0;
while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
}
reader.close();
}
catch (IOException err) {
err.printStackTrace();
fail("read file failed: " + err);
}
for(int row = 0; row < DIM_X; row++)
assertTrue("testH5export_region: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
}
@Test
public void testH5export_attribute() {
int[] dset_data_expect = {0, 3, 6, 9, 1, 4, 7, 10, 2, 5, 8, 11};
int[] dset_indata = new int[DIM_ATTR];
String objName = "/Dataset3";
_openH5File(H5_ATTR_FILE, objName);
try {
H5.H5export_dataset(EXPORT_ATTR_FILE, H5did, objName, 99);
}
catch (HDF5LibraryException err) {
err.printStackTrace();
fail("H5export_dataset failed: " + err);
}
File file = new File(EXPORT_ATTR_FILE);
try {
Reader reader = new FileReader(EXPORT_ATTR_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
int indx = 0;
int jndx = 0;
while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
}
reader.close();
}
catch (IOException err) {
err.printStackTrace();
fail("read file failed: " + err);
}
for(int row = 0; row < DIM_X; row++)
assertTrue("testH5export_attribute: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
}
@Test
public void testH5export_regdataset() {
int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108,
111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
int[] dset_indata = new int[DIM_BLKS+DIM_PNTS];
String objName = "/Dataset1";
_openH5File(H5_DREG_FILE, objName);
try {
H5.H5export_dataset(EXPORT_DREG_FILE, H5fid, objName, 99);
}
catch (HDF5LibraryException err) {
err.printStackTrace();
fail("H5export_dataset failed: " + err);
}
File file = new File(EXPORT_DREG_FILE);
try {
Reader reader = new FileReader(EXPORT_DREG_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
int indx = 0;
while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
}
reader.close();
}
catch (IOException err) {
err.printStackTrace();
fail("read file failed: " + err);
}
for(int row = 0; row < DIM_X; row++)
assertTrue("testH5export_regdataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
}
@Test
public void testH5export_attrdataset() {
int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108,
111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
int[] dset_indata = new int[DIM_BLKS+DIM_PNTS];
String dsetName = "/Dataset1";
String objName = "Attribute1";
_openH5File(H5_AREG_FILE, dsetName);
try {
H5.H5export_attribute(EXPORT_AREG_FILE, H5did, objName, 99);
}
catch (HDF5LibraryException err) {
err.printStackTrace();
fail("H5export_attribute failed: " + err);
}
File file = new File(EXPORT_AREG_FILE);
try {
Reader reader = new FileReader(EXPORT_AREG_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
int indx = 0;
int jndx = 0;
while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
}
reader.close();
}
catch (IOException err) {
err.printStackTrace();
fail("read file failed: " + err);
}
for(int row = 0; row < DIM_X; row++)
assertTrue("testH5export_attrdataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
}
}

115
java/test/TestH5A.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -43,14 +42,14 @@ public class TestH5A {
private static final String H5_FILE = "testA.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
long type_id = -1;
long space_id = -1;
long lapl_id = -1;
long aapl_id = -1;
long type_id = HDF5Constants.H5I_INVALID_HID;
long space_id = HDF5Constants.H5I_INVALID_HID;
long lapl_id = HDF5Constants.H5I_INVALID_HID;
long aapl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -61,7 +60,7 @@ public class TestH5A {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
@@ -132,7 +131,7 @@ public class TestH5A {
@Test
public void testH5Acreate2() {
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Acreate2", attr_id >= 0);
@@ -160,8 +159,8 @@ public class TestH5A {
@Test
public void testH5Aopen() {
String attr_name = "dset";
long attribute_id = -1;
long attr_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, attr_name, type_id, space_id,
@@ -197,8 +196,8 @@ public class TestH5A {
int idx_type = HDF5Constants.H5_INDEX_CRT_ORDER;
int order = HDF5Constants.H5_ITER_INC;
long n = 0;
long attr_id = -1;
long attribute_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "file", type_id, space_id,
@@ -256,7 +255,7 @@ public class TestH5A {
public void testH5Acreate_by_name() {
String obj_name = ".";
String attr_name = "DATASET";
long attribute_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
boolean bool_val = false;
try {
@@ -288,7 +287,7 @@ public class TestH5A {
long loc_id = H5fid;
String old_attr_name = "old";
String new_attr_name = "new";
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int ret_val = -1;
boolean bool_val = false;
@@ -326,7 +325,7 @@ public class TestH5A {
String obj_name = ".";
String old_attr_name = "old";
String new_attr_name = "new";
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int ret_val = -1;
boolean bool_val = false;
@@ -368,7 +367,7 @@ public class TestH5A {
String obj_name = ".";
String attr_name = "DATASET1";
String ret_name = null;
long attribute_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
@@ -398,8 +397,8 @@ public class TestH5A {
int idx_type = HDF5Constants.H5_INDEX_NAME;
int order = HDF5Constants.H5_ITER_INC;
int n = 0;
long attr1_id = -1;
long attr2_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(loc_id, obj_name, attr_name,
@@ -435,8 +434,8 @@ public class TestH5A {
@Test
public void testH5Aget_storage_size() {
long attr_id = -1;
long attr_size = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attr_size = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id,
@@ -458,8 +457,8 @@ public class TestH5A {
@Test
public void testH5Aget_info() {
H5A_info_t attr_info = null;
long attribute_id = -1;
long attr_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id,
@@ -490,8 +489,8 @@ public class TestH5A {
@Test
public void testH5Aget_info1() {
H5A_info_t attr_info = null;
long attribute_id = -1;
long attr_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int order = HDF5Constants.H5_ITER_INC;
try {
@@ -526,8 +525,8 @@ public class TestH5A {
@Test
public void testH5Aget_info_by_idx() {
long attr_id = -1;
long attr2_id = -1;;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;;
H5A_info_t attr_info = null;
try {
@@ -582,7 +581,7 @@ public class TestH5A {
@Test
public void testH5Aget_info_by_name() {
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
H5A_info_t attr_info = null;
String obj_name = ".";
String attr_name = "DATASET";
@@ -607,7 +606,7 @@ public class TestH5A {
@Test
public void testH5Adelete_by_name() {
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int ret_val = -1;
boolean bool_val = false;
boolean exists = false;
@@ -650,8 +649,8 @@ public class TestH5A {
@Test
public void testH5Aexists() {
boolean exists = false;
long attr_id = -1;
long attribute_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
exists = H5.H5Aexists(H5fid, "None");
@@ -689,10 +688,10 @@ public class TestH5A {
@Test
public void testH5Adelete_by_idx_order() {
boolean exists = false;
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
@@ -731,9 +730,9 @@ public class TestH5A {
@Test
public void testH5Adelete_by_idx_name1() {
boolean exists = false;
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
@@ -766,10 +765,10 @@ public class TestH5A {
@Test
public void testH5Adelete_by_idx_name2() {
boolean exists = false;
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
@@ -821,8 +820,8 @@ public class TestH5A {
public void testH5Aopen_by_name() {
String obj_name = ".";
String attr_name = "DATASET";
long attribute_id = -1;
long aid = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long aid = HDF5Constants.H5I_INVALID_HID;
try {
attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
@@ -856,9 +855,9 @@ public class TestH5A {
@Test
public void testH5Awrite_readVL() {
String attr_name = "VLdata";
long attr_id = -1;
long atype_id = -1;
long aspace_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long atype_id = HDF5Constants.H5I_INVALID_HID;
long aspace_id = HDF5Constants.H5I_INVALID_HID;
String[] str_data = { "Parting", "is such", "sweet", "sorrow." };
long[] dims = { str_data.length };
long lsize = 1;
@@ -923,8 +922,8 @@ public class TestH5A {
public void testH5Aget_create_plist() {
String attr_name = "DATASET1";
int char_encoding = 0;
long plist_id = -1;
long attribute_id = -1;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
plist_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_CREATE);
@@ -984,10 +983,10 @@ public class TestH5A {
@Test
public void testH5Aiterate() {
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
class idata {
public String attr_name = null;
@@ -1052,10 +1051,10 @@ public class TestH5A {
@Test
public void testH5Aiterate_by_name() {
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
class idata {
public String attr_name = null;

449
java/test/TestH5Arw.java Normal file
View File

@@ -0,0 +1,449 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.HDFNativeData;
import hdf.hdf5lib.callbacks.H5A_iterate_cb;
import hdf.hdf5lib.callbacks.H5A_iterate_t;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Arw {
@Rule public TestName testname = new TestName();
private static final String H5_INTS_FILE = "tintsattrs.h5";
private static final String H5_FLTS_FILE = "tfloatsattrs.h5";
private static final int DIM_X = 8;
private static final int DIM8_Y = 8;
private static final int DIM16_Y = 16;
private static final int DIM32_Y = 32;
private static final int DIM64_Y = 64;
private static final int DIM128_Y = 128;
private static final String DATASETU08 = "DU08BITS";
private static final String DATASETS08 = "DS08BITS";
private static final String DATASETU16 = "DU16BITS";
private static final String DATASETS16 = "DS16BITS";
private static final String DATASETU32 = "DU32BITS";
private static final String DATASETS32 = "DS32BITS";
private static final String DATASETU64 = "DU64BITS";
private static final String DATASETS64 = "DS64BITS";
private static final String DATASETF32 = "DS32BITS";
private static final String DATASETF64 = "DS64BITS";
private static final String DATASETF128 = "DS128BITS";
private static final int RANK = 2;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5aid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
private final void _closeH5file() throws HDF5LibraryException {
if (H5aid >= 0)
try {H5.H5Aclose(H5aid);} catch (Exception ex) {}
if (H5did >= 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
}
public void openH5file(String filename, String dsetname) {
try {
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Arw._openH5file: " + err);
}
assertTrue("TestH5Arw._openH5file: H5.H5Fopen: ", H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Arw._openH5file: " + err);
}
assertTrue("TestH5Arw._openH5file: H5.H5Dopen: ", H5did >= 0);
try {
H5aid = H5.H5Aopen(H5did, dsetname, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Arw._openH5file: " + err);
}
assertTrue("TestH5Arw._openH5file: H5.H5Aopen: ", H5aid >= 0);
}
@After
public void closeH5file() throws HDF5LibraryException {
if (H5aid >= 0)
try {H5.H5Aclose(H5aid);} catch (Exception ex) {}
if (H5did >= 0)
try {H5.H5Aclose(H5did);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
H5aid = HDF5Constants.H5I_INVALID_HID;
System.out.println();
}
@Before
public void verifyCount()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
}
@Test
public void testH5Aread_8bit_ints() {
byte[][] attr_data = new byte[DIM_X][DIM8_Y];
try {
openH5file(H5_INTS_FILE, DATASETU08);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Aread_8bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT8, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_8bit_ints: H5Aread: " + err);
}
// End access to the attribute and release resources used by it.
try {
H5.H5Aclose(H5aid);
}
catch (Exception err) {
err.printStackTrace();
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS08, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_8bit_ints: H5Dopen: " + err);
}
// Open an existing attribute.
try {
H5aid = H5.H5Aopen(H5did, DATASETS08, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_8bit_ints: H5Aopen: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT8, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_8bit_ints: H5Aread: " + err);
}
}
@Test
public void testH5Aread_16bit_ints() {
short[][] attr_data = new short[DIM_X][DIM16_Y];
try {
openH5file(H5_INTS_FILE, DATASETU16);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Aread_16bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT16, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_16bit_ints: H5Aread: " + err);
}
// End access to the attribute and release resources used by it.
try {
H5.H5Aclose(H5aid);
}
catch (Exception err) {
err.printStackTrace();
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS16, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_16bit_ints: H5Dopen: " + err);
}
// Open an existing attribute.
try {
H5aid = H5.H5Aopen(H5did, DATASETS16, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_16bit_ints: H5Aopen: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT16, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_16bit_ints: H5Aread: " + err);
}
}
@Test
public void testH5Aread_32bit_ints() {
int[][] attr_data = new int[DIM_X][DIM16_Y];
try {
openH5file(H5_INTS_FILE, DATASETU32);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Aread_32bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT32, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_32bit_ints: H5Aread: " + err);
}
// End access to the attribute and release resources used by it.
try {
H5.H5Aclose(H5aid);
}
catch (Exception err) {
err.printStackTrace();
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS32, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_32bit_ints: H5Dopen: " + err);
}
// Open an existing attribute.
try {
H5aid = H5.H5Aopen(H5did, DATASETS32, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_32bit_ints: H5Aopen: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT32, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_32bit_ints: H5Aread: " + err);
}
}
@Test
public void testH5Aread_64bit_ints() {
long[][] attr_data = new long[DIM_X][DIM64_Y];
try {
openH5file(H5_INTS_FILE, DATASETU64);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Aread_64bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT64, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_64bit_ints: H5Aread: " + err);
}
// End access to the attribute and release resources used by it.
try {
H5.H5Aclose(H5aid);
}
catch (Exception err) {
err.printStackTrace();
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS64, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_64bit_ints: H5Dopen: " + err);
}
// Open an existing attribute.
try {
H5aid = H5.H5Aopen(H5did, DATASETS64, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_64bit_ints: H5Aopen: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT64, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_64bit_ints: H5Aread: " + err);
}
}
@Test
public void testH5Aread_32bit_floats() {
float[][] attr_data = new float[DIM_X][DIM32_Y];
try {
openH5file(H5_FLTS_FILE, DATASETF32);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Aread_32bit_floats: openH5file: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_FLOAT, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_32bit_floats: H5Aread: " + err);
}
for (int i = 0; i < DIM_X; i++)
assertTrue("testH5Aread_32bit_floats - H5.H5Aread: ", attr_data[i][0] == (32 - i));
}
@Test
public void testH5Aread_64bit_floats() {
double[][] attr_data = new double[DIM_X][DIM64_Y];
try {
openH5file(H5_FLTS_FILE, DATASETF64);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Aread_64bit_floats: openH5file: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_DOUBLE, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_64bit_floats: H5Aread: " + err);
}
for (int i = 0; i < DIM_X; i++)
assertTrue("testH5Aread_64bit_floats - H5.H5Aread: ", attr_data[i][0] == (64 - i));
}
@Test
public void testH5Aread_128bit_floats() {
byte[][][] attr_data = new byte[DIM_X][DIM128_Y][8];
try {
openH5file(H5_FLTS_FILE, DATASETF128);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Aread_128bit_floats: openH5file: " + err);
}
// Read data.
try {
H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_LDOUBLE, attr_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Aread_128bit_floats: H5Aread: " + err);
}
}
}

43
java/test/TestH5D.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -39,13 +38,13 @@ public class TestH5D {
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
private static final int RANK = 2;
long H5fid = -1;
long H5faplid = -1;
long H5dsid = -1;
long H5dtid = -1;
long H5did = -1;
long H5did0 = -1;
long H5dcpl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5faplid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5dtid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5did0 = HDF5Constants.H5I_INVALID_HID;
long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
// Values for the status of space allocation
@@ -195,10 +194,10 @@ public class TestH5D {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
}
private final void _openH5file(String name, long dapl) {
private final void _openH5file(String filename, String dsetname, long dapl) {
try {
H5fid = H5.H5Fopen(H5_FILE,
HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -206,7 +205,7 @@ public class TestH5D {
}
assertTrue("TestH5D._openH5file: H5.H5Fopen: ",H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, name, dapl);
H5did = H5.H5Dopen(H5fid, dsetname, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -268,7 +267,7 @@ public class TestH5D {
@Test
public void testH5Dcreate() {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate(H5fid, "dset",
HDF5Constants.H5T_STD_I32BE, H5dsid,
@@ -292,7 +291,7 @@ public class TestH5D {
@Test
public void testH5Dcreate_anon() {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE,
H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -315,12 +314,12 @@ public class TestH5D {
@Test
public void testH5Dopen() {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
H5.H5Dclose(H5did);
H5did = -1;
H5did = HDF5Constants.H5I_INVALID_HID;
dataset_id = H5.H5Dopen(H5fid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
@@ -388,8 +387,8 @@ public class TestH5D {
@Test
public void testH5Dget_access_plist() {
long dapl_id = -1;
long test_dapl_id = -1;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long test_dapl_id = HDF5Constants.H5I_INVALID_HID;
int[] mdc_nelmts1 = {0};
int[] mdc_nelmts2 = {0};
long[] rdcc_nelmts1 = {0};
@@ -500,7 +499,7 @@ public class TestH5D {
@Test(expected = HDF5LibraryException.class)
public void testH5Dget_space_closed() throws Throwable {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate(H5fid, "dset",
HDF5Constants.H5T_STD_I32BE, H5dsid,
@@ -518,7 +517,7 @@ public class TestH5D {
@Test
public void testH5Dget_space() {
long dataspace_id = -1;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
@@ -542,7 +541,7 @@ public class TestH5D {
@Test(expected = HDF5LibraryException.class)
public void testH5Dget_type_closed() throws Throwable {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate(H5fid, "dset",
HDF5Constants.H5T_STD_I32BE, H5dsid,
@@ -560,7 +559,7 @@ public class TestH5D {
@Test
public void testH5Dget_type() {
long datatype_id = -1;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {

1
java/test/TestH5Dparams.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

9
java/test/TestH5Dplist.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -42,10 +41,10 @@ public class TestH5Dplist {
private static final int NDIMS = 2;
private static final int FILLVAL = 99;
private static final int RANK = 2;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5dcpl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
long[] H5extdims = { EDIM_X, EDIM_Y };
long[] H5chunk_dims = { CHUNK_X, CHUNK_Y };

378
java/test/TestH5Drw.java Normal file
View File

@@ -0,0 +1,378 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.HDFNativeData;
import hdf.hdf5lib.callbacks.H5D_iterate_cb;
import hdf.hdf5lib.callbacks.H5D_iterate_t;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Drw {
@Rule public TestName testname = new TestName();
private static final String H5_INTS_FILE = "tintsattrs.h5";
private static final String H5_FLTS_FILE = "tfloatsattrs.h5";
private static final int DIM_X = 8;
private static final int DIM8_Y = 8;
private static final int DIM16_Y = 16;
private static final int DIM32_Y = 32;
private static final int DIM64_Y = 64;
private static final int DIM128_Y = 128;
private static final String DATASETU08 = "DU08BITS";
private static final String DATASETS08 = "DS08BITS";
private static final String DATASETU16 = "DU16BITS";
private static final String DATASETS16 = "DS16BITS";
private static final String DATASETU32 = "DU32BITS";
private static final String DATASETS32 = "DS32BITS";
private static final String DATASETU64 = "DU64BITS";
private static final String DATASETS64 = "DS64BITS";
private static final String DATASETF32 = "DS32BITS";
private static final String DATASETF64 = "DS64BITS";
private static final String DATASETF128 = "DS128BITS";
private static final int RANK = 2;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
private final void _closeH5file() throws HDF5LibraryException {
if (H5did >= 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
}
public void openH5file(String filename, String dsetname) {
try {
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Drw._openH5file: " + err);
}
assertTrue("TestH5Drw._openH5file: H5.H5Fopen: ", H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Drw._openH5file: " + err);
}
assertTrue("TestH5Drw._openH5file: H5.H5Dopen: ", H5did >= 0);
}
@After
public void closeH5file() throws HDF5LibraryException {
if (H5did >= 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
System.out.println();
}
@Before
public void verifyCount()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
}
@Test
public void testH5Dread_8bit_ints() {
byte[][] dset_data = new byte[DIM_X][DIM8_Y];
try {
openH5file(H5_INTS_FILE, DATASETU08);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Dread_8bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_8bit_ints: H5Dread: " + err);
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS08, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_8bit_ints: H5Dopen: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_8bit_ints: H5Dread: " + err);
}
}
@Test
public void testH5Dread_16bit_ints() {
short[][] dset_data = new short[DIM_X][DIM16_Y];
try {
openH5file(H5_INTS_FILE, DATASETU16);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Dread_16bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT16, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_16bit_ints: H5Dread: " + err);
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS16, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_16bit_ints: H5Dopen: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT16, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_16bit_ints: H5Dread: " + err);
}
}
@Test
public void testH5Dread_32bit_ints() {
int[][] dset_data = new int[DIM_X][DIM16_Y];
try {
openH5file(H5_INTS_FILE, DATASETU32);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Dread_32bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT32, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_32bit_ints: H5Dread: " + err);
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS32, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_32bit_ints: H5Dopen: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT32, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_32bit_ints: H5Dread: " + err);
}
}
@Test
public void testH5Dread_64bit_ints() {
long[][] dset_data = new long[DIM_X][DIM64_Y];
try {
openH5file(H5_INTS_FILE, DATASETU64);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Dread_64bit_ints: openH5file: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT64, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_64bit_ints: H5Dread: " + err);
}
// End access to the dataset and release resources used by it.
try {
H5.H5Dclose(H5did);
}
catch (Exception err) {
err.printStackTrace();
}
// Open an existing dataset.
try {
H5did = H5.H5Dopen(H5fid, DATASETS64, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_64bit_ints: H5Dopen: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT64, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_64bit_ints: H5Dread: " + err);
}
}
@Test
public void testH5Dread_32bit_floats() {
float[][] dset_data = new float[DIM_X][DIM32_Y];
try {
openH5file(H5_FLTS_FILE, DATASETF32);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Dread_32bit_floats: openH5file: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_FLOAT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_32bit_floats: H5Dread: " + err);
}
for (int i = 0; i < DIM_X; i++)
assertTrue("testH5Dread_32bit_floats - H5.H5Dread: ", dset_data[i][0] == (32 - i));
}
@Test
public void testH5Dread_64bit_floats() {
double[][] dset_data = new double[DIM_X][DIM64_Y];
try {
openH5file(H5_FLTS_FILE, DATASETF64);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Dread_64bit_floats: openH5file: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_64bit_floats: H5Dread: " + err);
}
for (int i = 0; i < DIM_X; i++)
assertTrue("testH5Dread_64bit_floats - H5.H5Dread: ", dset_data[i][0] == (64 - i));
}
@Test
public void testH5Dread_128bit_floats() {
byte[][][] dset_data = new byte[DIM_X][DIM128_Y][8];
try {
openH5file(H5_FLTS_FILE, DATASETF128);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Dread_128bit_floats: openH5file: " + err);
}
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_LDOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_128bit_floats: H5Dread: " + err);
}
}
}

1
java/test/TestH5E.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

85
java/test/TestH5Edefault.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -58,27 +57,27 @@ public class TestH5Edefault {
@Ignore
public void testH5Eprint() {
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector and the error stack might be different.
* Only check for the specific error stack if the native
* connector is being used.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null) {
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
}
try {
H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Eprint: " + err);
}
}
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector and the error stack might be different.
* Only check for the specific error stack if the native
* connector is being used.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null) {
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
}
try {
H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Eprint: " + err);
}
}
}
@Test
@@ -439,27 +438,27 @@ public class TestH5Edefault {
@Ignore
public void testH5EprintInt() {
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector and the error stack might be different.
* Only check for the specific error stack if the native
* connector is being used.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null) {
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
}
try {
H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5EprintInt: " + err);
}
}
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector and the error stack might be different.
* Only check for the specific error stack if the native
* connector is being used.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null) {
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
}
try {
H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5EprintInt: " + err);
}
}
}
@Test

1
java/test/TestH5Eparams.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

1
java/test/TestH5Eregister.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

19
java/test/TestH5F.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -49,7 +48,7 @@ public class TestH5F {
HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP,
HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR,
HDF5Constants.H5F_OBJ_ALL };
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -74,7 +73,7 @@ public class TestH5F {
public void deleteH5file() throws HDF5LibraryException {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
_deleteFile(H5_FILE);
System.out.println();
@@ -82,7 +81,7 @@ public class TestH5F {
@Test
public void testH5Fget_create_plist() {
long plist = -1;
long plist = HDF5Constants.H5I_INVALID_HID;
try {
plist = H5.H5Fget_create_plist(H5fid);
@@ -106,7 +105,7 @@ public class TestH5F {
@Test
public void testH5Fget_access_plist() {
long plist = -1;
long plist = HDF5Constants.H5I_INVALID_HID;
try {
plist = H5.H5Fget_access_plist(H5fid);
@@ -134,7 +133,7 @@ public class TestH5F {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
@@ -159,7 +158,7 @@ public class TestH5F {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
@@ -182,8 +181,8 @@ public class TestH5F {
public void testH5Fget_fileno_same() {
long fileno1 = 0;
long fileno2 = 0;
long fid1 = -1;
long fid2 = -1;
long fid1 = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,
@@ -213,7 +212,7 @@ public class TestH5F {
public void testH5Fget_fileno_diff() {
long fileno1 = 0;
long fileno2 = 0;
long fid2 = -1;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,

17
java/test/TestH5Fbasic.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -35,7 +34,7 @@ public class TestH5Fbasic {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testFb.h5";
private static final String TXT_FILE = "testFb.txt";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -90,7 +89,7 @@ public class TestH5Fbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Fopen_read_only() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -125,8 +124,8 @@ public class TestH5Fbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Freopen_closed() throws Throwable {
long fid = -1;
long fid2 = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -148,8 +147,8 @@ public class TestH5Fbasic {
@Test
public void testH5Freopen() {
long fid = -1;
long fid2 = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -182,7 +181,7 @@ public class TestH5Fbasic {
@Test
public void testH5Fclose() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -202,7 +201,7 @@ public class TestH5Fbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Fclose_twice() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,

13
java/test/TestH5Fparams.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -105,7 +104,7 @@ public class TestH5Fparams {
@Test
public void testH5Fcreate() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
File file = null;
try {
@@ -132,7 +131,7 @@ public class TestH5Fparams {
@Test
public void testH5Fflush_global() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
@@ -158,7 +157,7 @@ public class TestH5Fparams {
@Test
public void testH5Fflush_local() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
@@ -184,7 +183,7 @@ public class TestH5Fparams {
@Test
public void testH5Fget_info() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
@@ -215,7 +214,7 @@ public class TestH5Fparams {
@Ignore//(expected = HDF5FunctionArgumentException.class)
public void testH5Fset_libver_bounds_invalidlow() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
@@ -234,7 +233,7 @@ public class TestH5Fparams {
@Ignore//(expected = HDF5FunctionArgumentException.class)
public void testH5Fset_libver_bounds_invalidhigh() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {

13
java/test/TestH5Fswmr.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -33,9 +32,9 @@ public class TestH5Fswmr {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testswmr.h5";
long H5fid = -1;
long H5fapl = -1;
long H5fcpl = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fapl = HDF5Constants.H5I_INVALID_HID;
long H5fcpl = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -63,15 +62,15 @@ public class TestH5Fswmr {
public void deleteH5file() throws HDF5LibraryException {
if (H5fapl > 0) {
try {H5.H5Pclose(H5fapl);} catch (Exception ex) {}
H5fapl = -1;
H5fapl = HDF5Constants.H5I_INVALID_HID;
}
if (H5fcpl > 0) {
try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {}
H5fcpl = -1;
H5fcpl = HDF5Constants.H5I_INVALID_HID;
}
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
_deleteFile(H5_FILE);
System.out.println();

31
java/test/TestH5G.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -39,11 +38,11 @@ public class TestH5G {
private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12",
"/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" };
private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
long H5fid = -1;
long H5fid2 = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -58,8 +57,8 @@ public class TestH5G {
}
private final long _createGroup2(long fid, String name) {
long gid = -1;
long gcpl = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
long gcpl = HDF5Constants.H5I_INVALID_HID;
try {
gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl
}
@@ -92,12 +91,12 @@ public class TestH5G {
}
private final long _openGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
gid = -1;
gid = HDF5Constants.H5I_INVALID_HID;
err.printStackTrace();
fail("H5.H5Gopen: " + err);
}
@@ -134,7 +133,7 @@ public class TestH5G {
assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid2 > 0);
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
gid = _createGroup(H5fid, GROUPS[i]);
@@ -165,7 +164,7 @@ public class TestH5G {
@Test
public void testH5Gopen() {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {
gid = H5.H5Gopen(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT);
@@ -185,8 +184,8 @@ public class TestH5G {
@Test
public void testH5Gget_create_plist() {
long gid = -1;
long pid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
long pid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {
@@ -325,7 +324,7 @@ public class TestH5G {
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
objTokens, HDF5Constants.H5_INDEX_NAME);
objTokens, HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
@@ -366,7 +365,7 @@ public class TestH5G {
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
objTokens, HDF5Constants.H5_INDEX_NAME);
objTokens, HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
@@ -401,7 +400,7 @@ public class TestH5G {
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
objTokens, groups_max_size);
objTokens, groups_max_size);
}
catch (Throwable err) {
err.printStackTrace();
@@ -432,7 +431,7 @@ public class TestH5G {
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
objTokens, groups_max_size);
objTokens, groups_max_size);
}
catch (Throwable err) {
err.printStackTrace();

17
java/test/TestH5Gbasic.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -33,10 +32,10 @@ import org.junit.rules.TestName;
public class TestH5Gbasic {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testGb.h5";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -85,7 +84,7 @@ public class TestH5Gbasic {
@Test(expected = NullPointerException.class)
public void testH5Gcreate_null() throws Throwable {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
// it should fail because the group name is null
gid = H5.H5Gcreate(H5fid, null, HDF5Constants.H5P_DEFAULT,
@@ -102,7 +101,7 @@ public class TestH5Gbasic {
@Test
public void testH5Gcreate() {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(H5fid, "/testH5Gcreate",
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
@@ -145,7 +144,7 @@ public class TestH5Gbasic {
@Test
public void testH5Gcreate_anon() {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate_anon(H5fid, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
@@ -161,7 +160,7 @@ public class TestH5Gbasic {
@Test(expected = NullPointerException.class)
public void testH5Gopen_null() throws Throwable {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
gid = H5.H5Gopen(H5fid, null, HDF5Constants.H5P_DEFAULT);
@@ -175,7 +174,7 @@ public class TestH5Gbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Gopen_not_exists() throws Throwable {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
gid = H5.H5Gopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
@@ -209,7 +208,7 @@ public class TestH5Gbasic {
@Test
public void testH5Gget_create_plist() {
long pid = -1;
long pid = HDF5Constants.H5I_INVALID_HID;
long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);

7
java/test/TestH5Giterate.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -31,15 +30,15 @@ import org.junit.rules.TestName;
public class TestH5Giterate {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterate.hdf";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final long _openGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
gid = -1;
gid = HDF5Constants.H5I_INVALID_HID;
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}

3
java/test/TestH5Lbasic.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -35,7 +34,7 @@ import org.junit.rules.TestName;
public class TestH5Lbasic {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterateL1.hdf";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
@Before
public void openH5file()

19
java/test/TestH5Lcreate.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -41,13 +40,13 @@ public class TestH5Lcreate {
private static final String H5_FILE = "testL.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fcpl = -1;
long H5fid = -1;
long H5dsid = -1;
long H5did1 = -1;
long H5did2 = -1;
long H5gcpl = -1;
long H5gid = -1;
long H5fcpl = HDF5Constants.H5I_INVALID_HID;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did1 = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long H5gcpl = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
private final void _deleteFile(String filename) {
@@ -64,7 +63,7 @@ public class TestH5Lcreate {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -80,7 +79,7 @@ public class TestH5Lcreate {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,

1
java/test/TestH5Lparams.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

55
java/test/TestH5Obasic.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -41,7 +40,7 @@ public class TestH5Obasic {
private static final String H5_FILE = "h5ex_g_iterateO1.hdf";
private static H5O_token_t H5la_ds1 = null;
private static H5O_token_t H5la_l1 = null;
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
@Before
public void openH5file()
@@ -69,7 +68,7 @@ public class TestH5Obasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Oopen_not_exists() throws Throwable {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
oid = H5.H5Oopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
@@ -78,7 +77,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_dataset() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
@@ -96,7 +95,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_hardlink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -113,7 +112,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_group() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
@@ -130,7 +129,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_datatype() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
@@ -234,7 +233,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -260,7 +259,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -286,7 +285,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_dataset() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -306,7 +305,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_hardlink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -326,7 +325,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_group() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -346,7 +345,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_datatype() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -376,10 +375,10 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_name_dataset() {
H5O_native_info_t native_info = null;
H5O_native_info_t native_info = null;
try {
native_info = H5.H5Oget_native_info_by_name(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info_by_name(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -393,10 +392,10 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_name_hardlink() {
H5O_native_info_t native_info = null;
H5O_native_info_t native_info = null;
try {
native_info = H5.H5Oget_native_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -410,10 +409,10 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_name_group() {
H5O_native_info_t native_info = null;
H5O_native_info_t native_info = null;
try {
native_info = H5.H5Oget_native_info_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -427,10 +426,10 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_name_datatype() {
H5O_native_info_t native_info = null;
H5O_native_info_t native_info = null;
try {
native_info = H5.H5Oget_native_info_by_name(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info_by_name(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -464,7 +463,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
@@ -486,7 +485,7 @@ public class TestH5Obasic {
try {H5.H5Oclose(oid);} catch (Exception ex) {}
try {
native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -503,7 +502,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
@@ -525,7 +524,7 @@ public class TestH5Obasic {
try {H5.H5Oclose(oid);} catch (Exception ex) {}
try {
native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -630,7 +629,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_token() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
@@ -668,7 +667,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
@@ -706,7 +705,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {

41
java/test/TestH5Ocopy.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -36,13 +35,13 @@ public class TestH5Ocopy {
private static final String FILENAME = "testRefsattribute.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = -1;
long H5dsid = -1;
long H5did1 = -1;
long H5did2 = -1;
long H5gcpl = -1;
long H5gid = -1;
long H5dsid2 = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did1 = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long H5gcpl = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long H5dsid2 = HDF5Constants.H5I_INVALID_HID;
long[] dims = { 2 };
private final void _deleteFile(String filename) {
@@ -59,7 +58,7 @@ public class TestH5Ocopy {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -75,7 +74,7 @@ public class TestH5Ocopy {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
@@ -136,10 +135,10 @@ public class TestH5Ocopy {
@Test
public void testH5OcopyRefsAttr() {
long ocp_plist_id = -1;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
byte rbuf0[]=null , rbuf1[] = null;
byte[] dset_data = new byte[16];
long attribute_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
@@ -184,9 +183,9 @@ public class TestH5Ocopy {
public void testH5OcopyRefsDatasettodiffFile() {
byte rbuf1[] = null;
byte[] dset_data = new byte[16];
long ocp_plist_id = -1;
long dataset_id = -1;
long H5fid2 = -1;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
try {
rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1);
@@ -244,9 +243,9 @@ public class TestH5Ocopy {
public void testH5OcopyRefsDatasettosameFile() {
byte rbuf0[]=null , rbuf1[] = null;
byte[] dset_data = new byte[16];
long ocp_plist_id = -1;
long dataset_id = -1;
long did = -1;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long did = HDF5Constants.H5I_INVALID_HID;
int obj_type = -1;
byte[] read_data = new byte[16];
@@ -328,9 +327,9 @@ public class TestH5Ocopy {
// @Test(expected = HDF5LibraryException.class)
// public void testH5OcopyInvalidRef() throws Throwable {
// final long _pid_ = HDF5Constants.H5P_DEFAULT;
// long sid = -1;
// long did = -1;
// long aid = -1;
// long sid = HDF5Constants.H5I_INVALID_HID;
// long did = HDF5Constants.H5I_INVALID_HID;
// long aid = HDF5Constants.H5I_INVALID_HID;
//
// try {
// sid = H5.H5Screate_simple(1, new long[] {1}, null);

27
java/test/TestH5Ocreate.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -41,13 +40,13 @@ public class TestH5Ocreate {
private static final String H5_FILE = "testO.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fcpl = -1;
long H5fid = -1;
long H5dsid = -1;
long H5did1 = -1;
long H5did2 = -1;
long H5gcpl = -1;
long H5gid = -1;
long H5fcpl = HDF5Constants.H5I_INVALID_HID;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did1 = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long H5gcpl = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
private final void _deleteFile(String filename) {
@@ -64,7 +63,7 @@ public class TestH5Ocreate {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -80,7 +79,7 @@ public class TestH5Ocreate {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
@@ -293,7 +292,7 @@ public class TestH5Ocreate {
@Test
public void testH5Olink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
H5O_info_t dst_obj_info = null;
try {
@@ -380,7 +379,7 @@ public class TestH5Ocreate {
@Test
public void testH5Ocomment() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
String obj_comment = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -405,7 +404,7 @@ public class TestH5Ocreate {
@Test
public void testH5Ocomment_clear() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
String obj_comment = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -506,7 +505,7 @@ public class TestH5Ocreate {
@Test
public void testH5Oinc_dec_count() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {

1
java/test/TestH5Oparams.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

31
java/test/TestH5P.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -41,20 +40,20 @@ public class TestH5P {
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long[] H5dims = { DIM_X, DIM_Y };
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long lapl_id = -1;
long fapl_id = -1;
long fcpl_id = -1;
long ocpl_id = -1;
long ocp_plist_id = -1;
long lcpl_id = -1;
long plapl_id = -1;
long plist_id = -1;
long gapl_id = -1;
long gcpl_id = -1;
long acpl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long lapl_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long fcpl_id = HDF5Constants.H5I_INVALID_HID;
long ocpl_id = HDF5Constants.H5I_INVALID_HID;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
long lcpl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long gapl_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
long acpl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -65,7 +64,7 @@ public class TestH5P {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);

11
java/test/TestH5PData.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -37,10 +36,10 @@ public class TestH5PData {
private static final String H5_FILE = "testPD.h5";
private static final int DIM_X = 12;
private static final int DIM_Y = 18;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long plist_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
double windchillF[][] =
{{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
@@ -66,7 +65,7 @@ public class TestH5PData {
}
private final long _createFloatDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);

11
java/test/TestH5PL.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -147,11 +146,11 @@ public class TestH5PL {
@Ignore
public void TestH5PLdlopen() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long fapl_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
try {
int[] cd_values = {9, 0, 0, 0};
int[] libversion = {0, 0, 0};

61
java/test/TestH5Pfapl.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -47,17 +46,17 @@ public class TestH5Pfapl {
private static final int DIM_Y = 6;
private static final int DIMF_X = 12;
private static final int DIMF_Y = 18;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5Fdsid = -1;
long H5Fdid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5Fdsid = HDF5Constants.H5I_INVALID_HID;
long H5Fdid = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
long[] H5Fdims = { DIMF_X, DIMF_Y };
double windchillF[][] =
{{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
@@ -130,7 +129,7 @@ public class TestH5Pfapl {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
@@ -385,7 +384,7 @@ public class TestH5Pfapl {
@Test
public void testH5Pget_elink_fapl() {
long ret_val_id = -1;
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
assertTrue("H5Pget_elink_fapl", ret_val_id >= 0);
@@ -403,7 +402,7 @@ public class TestH5Pfapl {
@Test
public void testH5P_elink_fapl() {
long ret_val_id = -1;
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
H5.H5Pset_elink_fapl(plapl_id, fapl_id );
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
@@ -421,7 +420,7 @@ public class TestH5Pfapl {
@Test
public void testH5P_elink_file_cache_size() {
long elink_fapl_id = -1;
long elink_fapl_id = HDF5Constants.H5I_INVALID_HID;
int efc_size = 0;
try {
H5.H5Pset_elink_fapl(plapl_id, fapl_id );
@@ -1398,4 +1397,36 @@ public class TestH5Pfapl {
fail("H5P_evict_on_close: " + err);
}
}
@Test
public void testH5P_file_locking() {
boolean use_file_locking = false;
boolean ignore_disabled_file_locking = false;
try {
// false values (usually not the default)
H5.H5Pset_file_locking(fapl_id, false, false);
use_file_locking = H5.H5Pget_use_file_locking(fapl_id);
ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id);
assertFalse("H5P_file_locking", use_file_locking);
assertFalse("H5P_file_locking", ignore_disabled_file_locking);
// true values (typically the default)
H5.H5Pset_file_locking(fapl_id, true, true);
use_file_locking = H5.H5Pget_use_file_locking(fapl_id);
ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id);
assertTrue("H5P_file_locking", use_file_locking);
assertTrue("H5P_file_locking", ignore_disabled_file_locking);
}
catch (HDF5PropertyListInterfaceException err) {
// parallel is not supported
if (err.getMinorErrorNumber() != HDF5Constants.H5E_UNSUPPORTED) {
err.printStackTrace();
fail("H5P_test_file_locking: " + err);
}
}
catch (Throwable err) {
err.printStackTrace();
fail("H5P_test_file_locking: " + err);
}
}
}

11
java/test/TestH5Pfaplhdfs.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,11 +33,11 @@ import org.junit.rules.TestName;
public class TestH5Pfaplhdfs {
@Rule public TestName testname = new TestName();
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
@Before
public void createFileAccess() throws NullPointerException, HDF5Exception

11
java/test/TestH5Pfapls3.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,11 +33,11 @@ import org.junit.rules.TestName;
public class TestH5Pfapls3 {
@Rule public TestName testname = new TestName();
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
@Before
public void createFileAccess() throws NullPointerException, HDF5Exception

33
java/test/TestH5Plist.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -85,7 +84,7 @@ public class TestH5Plist {
PROP3_NAME,
PROP4_NAME};
long plist_class_id = -1;
long plist_class_id = HDF5Constants.H5I_INVALID_HID;
@Before
public void createPropClass()throws NullPointerException, HDF5Exception
@@ -114,9 +113,9 @@ public class TestH5Plist {
@Test
public void testH5P_genprop_basic_class() {
int status = -1;
long cid1 = -1; // Generic Property class ID
long cid2 = -1; // Generic Property class ID
long cid3 = -1; // Generic Property class ID
long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
long cid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
String name = null; // Name of class
try {
@@ -162,7 +161,7 @@ public class TestH5Plist {
// Close parent class
try {
H5.H5Pclose_class(cid2);
cid2 = -1;
cid2 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -172,7 +171,7 @@ public class TestH5Plist {
// Close class
try {
H5.H5Pclose_class(plist_class_id);
plist_class_id = -1;
plist_class_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -242,7 +241,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid3);
cid3 = -1;
cid3 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -252,7 +251,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid2);
cid2 = -1;
cid2 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -262,7 +261,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid1);
cid1 = -1;
cid1 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -634,7 +633,7 @@ public class TestH5Plist {
@Test
public void testH5P_genprop_basic_list_prop() {
boolean status = false;
long lid1 = -1; // Generic Property list ID
long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
long nprops = -1; // Number of properties in class
try {
@@ -760,7 +759,7 @@ public class TestH5Plist {
// @Test
// public void testH5P_genprop_class_callback() {
// class cdata {
// public long cls_id = -1;
// public long cls_id = HDF5Constants.H5I_INVALID_HID;
// public int cls_count = -1;
// cdata(long id, int count) {
// this.cls_id = id;
@@ -813,11 +812,11 @@ public class TestH5Plist {
// }
// H5P_cls_close_func_cb cls_close_cb = new H5P_cls_close_callback();
//
// long cid1 = -1; // Generic Property class ID
// long cid2 = -1; // Generic Property class ID
// long lid1 = -1; // Generic Property list ID
// long lid2 = -1; // Generic Property list ID
// long lid3 = -1; // Generic Property list ID
// long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
// long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
// long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long lid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long lid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long nprops = -1; // Number of properties in class
//
// try {

27
java/test/TestH5Pvirtual.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -52,13 +51,13 @@ public class TestH5Pvirtual {
private static final int fill_value = -1;
long[] H5dims = { DIM_Y };
long[] VDSH5dims = { VDSDIM_X, VDSDIM_Y };
long H5fid = -1;
long H5dsid = -1;
long H5dssid = -1;
long H5dvsid = -1;
long H5did = -1;
long H5dcplid = -1;
long H5dapl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5dssid = HDF5Constants.H5I_INVALID_HID;
long H5dvsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5dcplid = HDF5Constants.H5I_INVALID_HID;
long H5dapl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -69,8 +68,8 @@ public class TestH5Pvirtual {
}
private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) {
long did = -1;
long space_id = -1;
long did = HDF5Constants.H5I_INVALID_HID;
long space_id = HDF5Constants.H5I_INVALID_HID;
long[] start = {0, 0};
long[] stride = null;
long[] count = {1, 1};
@@ -100,9 +99,9 @@ public class TestH5Pvirtual {
int[] dset_data = new int[DIM_Y];
// Create source files and datasets
for (int i=0; i < 3; i++) {
long space_id = -1;
long dset_id = -1;
long file_id = -1;
long space_id = HDF5Constants.H5I_INVALID_HID;
long dset_id = HDF5Constants.H5I_INVALID_HID;
long file_id = HDF5Constants.H5I_INVALID_HID;
for (int j = 0; j < DIM_Y; j++) dset_data[j] = i+1;
try {
@@ -265,7 +264,7 @@ public class TestH5Pvirtual {
@Test
public void testH5Pget_selection_source_dataset() throws Throwable {
long src_space = -1;
long src_space = HDF5Constants.H5I_INVALID_HID;
long src_selection = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);

118
java/test/TestH5R.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -39,11 +38,11 @@ public class TestH5R {
private static final String H5_FILE = "testH5R.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5gid = -1;
long H5did2 = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
int FILLVAL = 99;
@@ -62,7 +61,7 @@ public class TestH5R {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -78,7 +77,7 @@ public class TestH5R {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -150,109 +149,6 @@ public class TestH5R {
System.out.println();
}
// Test v1.8 APIs params
/*
* @Ignore public void testH5Rget_name() { long loc_id = H5fid; int ref_type =
* HDF5Constants.H5R_OBJECT; long ret_val = -1; byte[] ref = null; String[] name = {""}; String
* objName = "/dset";
*
* try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rget_name:H5Rcreate " + err); }
*
* try { ret_val = H5.H5Rget_name(loc_id, ref_type, ref, name, 16); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rget_name: " + err); }
*
* assertTrue("testH5Rget_name: H5Rget_name", ret_val>0); assertTrue("The name of the object: ",
* objName.equals(name[0])); }
*
* @Ignore public void testH5Rget_obj_type2() { int ref_type=HDF5Constants.H5R_OBJECT; byte[]
* ref=null;
*
* String objName = "/dset"; int obj_type = -1;
*
* try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch(Throwable err) {
* err.printStackTrace(); }
*
* try { obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, ref); } catch (Throwable
* err) { err.printStackTrace(); fail("H5.H5Rget_obj_type2: " + err); } assertEquals(obj_type,
* HDF5Constants.H5O_TYPE_DATASET); }
*
* @Ignore public void testH5Rcreate_refobj() { byte[] ref = null;
*
* try { ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); }
*
* @Ignore public void testH5Rcreate_regionrefobj() { byte[] ref = null; try { ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); }
*
* @Ignore public void testH5Rdereference() { byte[] ref1 = null; byte[] ref2 = null; long
* dataset_id = -1; long group_id = -1; try { //Create reference on dataset ref1 =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dataset_id=
* H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
*
* //Create reference on group ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
* group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
* assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); assertTrue(group_id >= 0);
* } catch (Throwable err) { err.printStackTrace(); fail("TestH5Rdereference " + err); } finally {
* try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} try {H5.H5Gclose(group_id);} catch
* (Exception ex) {} } }
*
* @Ignore public void testH5Rget_region() { byte[] ref = null; long dsid = -1; try { ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dsid =
* H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); assertNotNull(ref);
* assertTrue(dsid >= 0); } catch (Throwable err) { err.printStackTrace();
* fail("TestH5Rget_region: " + err); } finally { try {H5.H5Sclose(dsid);} catch (Exception ex) {} }
* }
*
* @Ignore//(expected = IllegalArgumentException.class) public void testH5Rget_name_Invalidreftype()
* throws Throwable { byte[] ref = null; String[] name = {""}; ref = H5.H5Rcreate(H5fid, "/dset",
* HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name,
* 16); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rget_name_NULLreference()
* throws Throwable { byte[] ref = null; String[] name = {""}; H5.H5Rget_name(H5fid,
* HDF5Constants.H5R_OBJECT, ref, name, 16); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void
* testH5Rget_obj_type2_Invalidreftype() throws Throwable { byte[] ref = null; ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_obj_type(H5fid,
* HDF5Constants.H5R_DATASET_REGION, ref); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_InvalidObjectName()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_Invalidspace_id()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1);
* }
*
* @Ignore//(expected = IllegalArgumentException.class) public void testH5Rcreate_Invalidreftype()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rgetregion_Invalidreftype() throws Throwable { byte[] ref = null; ref = H5.H5Rcreate(H5fid,
* "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid,
* HDF5Constants.H5R_DATASET_REGION, ref); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rgetregion_Badreferencetype() throws Throwable { byte[] ref = null; ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid,
* HDF5Constants.H5R_OBJECT, ref); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rgetregion_Nullreference()
* throws Throwable { byte[] ref = null; H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION,
* ref); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rdereference_Nullreference()
* throws Throwable { byte[] ref = null; H5.H5Rdereference(H5did2, HDF5Constants.H5P_DEFAULT,
* HDF5Constants.H5R_OBJECT, ref); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rdereference_Invalidreference() throws Throwable { byte[] ref1 = null; byte[] ref2 = null;
* ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); ref2 =
* H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); H5.H5Rdereference(H5gid,
* HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1); }
*/
// Test v1.12 APIs params
@Test

561
java/test/TestH5Rref.java Normal file
View File

@@ -0,0 +1,561 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
import org.junit.After;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Rref {
@Rule public TestName testname = new TestName();
private static final String H5_DREG_FILE = "trefer_reg.h5";
private static final String H5_AREG_FILE = "trefer_attr.h5";
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
private boolean byteArrayCheck(final byte[] array) {
for (byte b : array) {
if (b != 0) {
return false;
}
}
return true;
}
public void openH5file(String filename, String dsetname) {
try {
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R._openH5file: " + err);
}
assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R._openH5file: " + err);
}
assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0);
try {
H5dsid = H5.H5Dget_space(H5did);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R._openH5file: " + err);
}
assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
}
@After
public void closeH5file() throws HDF5LibraryException {
if (H5did >= 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = HDF5Constants.H5I_INVALID_HID;
H5dsid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
System.out.println();
}
@Before
public void verifyCount()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
}
// Test v1.12 APIs params
@Test
public void testH5Rget_object() {
int ref_type = HDF5Constants.H5R_OBJECT1;
long f_type = HDF5Constants.H5I_INVALID_HID;
int obj_type = -1;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String name = "";
String objName = "/DS_NA";
try {
openH5file(H5_DREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_object: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_object: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_object: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
}
catch (Throwable err2) {
err2.printStackTrace();
fail("testH5Rget_object: H5.H5Rget_obj_type3: " + err2);
}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
}
}
@Test
public void testH5Rget_obj_type3() {
long f_type = HDF5Constants.H5I_INVALID_HID;
int ref_type = HDF5Constants.H5R_DATASET_REGION2;
int obj_type = -1;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String objName = "/Dataset1";
try {
openH5file(H5_DREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_obj_type3: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_obj_type3: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_obj_type3: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
}
catch (Throwable err2) {
err2.printStackTrace();
fail("testH5Rget_obj_type3: H5.H5Rget_obj_type3: " + err2);
}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
}
}
@Test
public void testH5Rget_region_dataset() {
long f_type = HDF5Constants.H5I_INVALID_HID;
long loc_id = HDF5Constants.H5I_INVALID_HID;
long loc_sid = HDF5Constants.H5I_INVALID_HID;
int ref_type = HDF5Constants.H5R_DATASET_REGION2;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String name = "";
String objName = "/Dataset1";
try {
openH5file(H5_DREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_region_dataset: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_region_dataset: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
try {
loc_id = H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue(loc_id >= 0);
boolean regionzero = byteArrayCheck(refbuf[i]);
if (i > 1)
assertTrue(regionzero);
else {
try {
loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue(loc_sid >= 0);
int region_type = -1;
try {
int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid);
region_type = H5.H5Sget_select_type(loc_sid);
if (i == 1)
assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS);
else
assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS);
if (region_type == HDF5Constants.H5S_SEL_POINTS) {
long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid);
// Coordinates for get point selection
long getcoord[] = new long[reg_ndims * (int)reg_npoints];
// Known coordinates for point selection
long coord[][] = {{6,9},{2,2},{8,4},{1,6},{2,8},{3,2},
{0,4},{9,0},{7,1},{3,3}};
try {
H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]);
}
catch (Throwable err3) {
err3.printStackTrace();
fail("H5.H5Sget_select_elem_pointlist: " + err3);
}
}
else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) {
long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid);
assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1);
// Coordinates for get block selection
long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2];
long start[] = {2,2};
long block[] = {8,8};
try {
H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks);
assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]);
assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == getblocks[2]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == getblocks[3]);
}
catch (Throwable err3) {
err3.printStackTrace();
fail("H5.H5Sget_select_hyper_blocklist: " + err3);
}
}
}
catch (Throwable err2) {
err2.printStackTrace();
fail("testH5Rget_region_dataset: H5Sget_select_type: " + err2);
}
}
catch (Throwable err1) {
err1.printStackTrace();
fail("testH5Rget_region_dataset: " + err1);
}
finally {
try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
}
}
}
catch (Throwable err0) {
err0.printStackTrace();
fail("testH5Rget_region_dataset: " + err0);
}
finally {
try {H5.H5Dclose(loc_id);} catch (Exception ex) {}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
} //for (int i = 0; i < ndims; i++)
}
@Test
public void testH5Rget_region_attribute() {
long f_type = HDF5Constants.H5I_INVALID_HID;
long loc_id = HDF5Constants.H5I_INVALID_HID;
long loc_sid = HDF5Constants.H5I_INVALID_HID;
int ref_type = HDF5Constants.H5R_ATTR;
int obj_type = -1;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String objName = "/Dataset3";
try {
openH5file(H5_AREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_region_attribute: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_region_attribute: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
try {
loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue(loc_id >= 0);
if (!byteArrayCheck(refbuf[i])) {
try {
loc_sid = H5.H5Aget_space(loc_id);
assertTrue(loc_sid >= 0);
}
catch (Throwable err1) {
err1.printStackTrace();
fail("testH5Rget_region_attribute: " + err1);
}
finally {
try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
}
}
}
catch (Throwable err0) {
err0.printStackTrace();
fail("testH5Rget_region_attribute: " + err0);
}
finally {
try {H5.H5Aclose(loc_id);} catch (Exception ex) {}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
}
}
// These tests need to be updated with new APIs
// @Test//
// public void testH5Rget_group() {
// long loc_id = H5fid;
// int ref_type = HDF5Constants.H5R_OBJECT2;
// long ret_val = -1;
// byte[] ref = null;
// String name = "";
// String objName = "/dset";
//
// try {
// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("testH5Rget_object: H5Rcreate_object " + err);
// }
// try {
// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
//
// //Create reference on group
// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
// assertNotNull(ref1);
// assertNotNull(ref2);
// assertTrue(dataset_id >= 0);
// assertTrue(group_id >= 0);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("TestH5Rdereference " + err);
// }
// finally {
// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
// }
// }
// @Test//
// public void testH5Rget_attr() {
// long loc_id = H5fid;
// int ref_type = HDF5Constants.H5R_OBJECT2;
// long ret_val = -1;
// byte[] ref = null;
// String name = "";
// String objName = "/dset";
//
// try {
// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("testH5Rget_object: H5Rcreate_object " + err);
// }
// try {
// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
// assertNotNull(ref);
// assertTrue(dsid >= 0);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("TestH5Rget_region: " + err);
// }
// finally {
// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
// }
// }
}

21
java/test/TestH5S.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -30,7 +29,7 @@ import org.junit.rules.TestName;
public class TestH5S {
@Rule public TestName testname = new TestName();
long H5sid = -1;
long H5sid = HDF5Constants.H5I_INVALID_HID;
int H5rank = 2;
long H5dims[] = {5, 5};
long H5maxdims[] = {10, 10};
@@ -181,7 +180,7 @@ public class TestH5S {
@Test
public void testH5Scopy() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int read_rank = -1;
try {
@@ -201,7 +200,7 @@ public class TestH5S {
@Test
public void testH5Sextent_copy() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
@@ -222,7 +221,7 @@ public class TestH5S {
@Test
public void testH5Sextent_equal() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
boolean result = false;
try {
@@ -252,8 +251,8 @@ public class TestH5S {
@Test
public void testH5Sencode_decode_null_dataspace() {
long sid = -1;
long decoded_sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] null_sbuf = null;
boolean result = false;
@@ -299,8 +298,8 @@ public class TestH5S {
@Test
public void testH5Sencode_decode_scalar_dataspace() {
long sid = -1;
long decoded_sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] scalar_sbuf = null;
boolean result = false;
int iresult = -1;
@@ -470,7 +469,7 @@ public class TestH5S {
@Test
public void testH5Sget_select_hyper() {
long space1 = -1;
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {0,0};
long stride[] = {1,1};
long count[] = {1,1};
@@ -508,7 +507,7 @@ public class TestH5S {
@Test
public void testH5Sget_select_valid() {
long space1 = -1;
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {1,0};
long stride[] = {1,1};
long count[] = {2,3};

153
java/test/TestH5Sbasic.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -56,7 +55,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_scalar() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
@@ -75,7 +74,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_null() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
@@ -125,7 +124,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 2;
long dims[] = {5, 5};
@@ -148,7 +147,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_unlimted() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 2;
long dims[] = {5, 5};
@@ -171,7 +170,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_unlimted_1d() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 1;
long dims[] = {5};
@@ -194,7 +193,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_max_default() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int rank = 2;
long dims[] = {5, 5};
@@ -213,7 +212,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_extent() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int rank = 2;
long dims[] = {5, 5};
long maxdims[] = {10, 10};
@@ -242,4 +241,142 @@ public class TestH5Sbasic {
H5.H5Sdecode(null);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sget_regular_hyperslab_invalid() throws Throwable {
long q_start[] = new long[2];
long q_stride[] = new long[2];
long q_count[] = new long[2];
long q_block[] = new long[2];
H5.H5Sget_regular_hyperslab(-1, q_start, q_stride, q_count, q_block);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Sselect_copy_invalid() throws Throwable {
H5.H5Sselect_copy(-1, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
public void testH5Sselect_shape_same_invalid() throws Throwable {
H5.H5Sselect_shape_same(-1, -1);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_adjust_invalid() throws Throwable {
long offset[][] = {{0,1},{2,4},{5,6}};
H5.H5Sselect_adjust(-1, offset);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_adjust_rank_offset() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long offset[][] = {{0,1},{2,4},{5,6}};
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Sselect_adjust(sid, offset);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_invalid() throws Throwable {
long start[] = new long[2];
long end[] = new long[2];
H5.H5Sselect_intersect_block(-1, start, end);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_rank_start() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = new long[2];
long end[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Sselect_intersect_block(sid, start, end);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_rank_end() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = null;
long end[] = new long[2];
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Sselect_intersect_block(sid, start, end);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
public void testH5Sselect_project_intersection_invalid() throws Throwable {
H5.H5Sselect_project_intersection(-1, -1, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Scombine_hyperslab_invalid() throws Throwable {
long start[] = new long[2];
long count[] = new long[2];
H5.H5Scombine_hyperslab(-1, 0, start, null, count, null);
}
@Test(expected = NullPointerException.class)
public void testH5Scombine_hyperslab_null_start() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = null;
long stride[] = null;
long count[] = new long[2];
long block[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = NullPointerException.class)
public void testH5Scombine_hyperslab_null_count() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = new long[2];
long stride[] = null;
long count[] = null;
long block[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Smodify_select_invalid() throws Throwable {
H5.H5Smodify_select(-1, 0, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Scombine_select_invalid() throws Throwable {
H5.H5Scombine_select(-1, 0, -1);
}
}

23
java/test/TestH5T.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -33,8 +32,8 @@ import org.junit.rules.TestName;
public class TestH5T {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testT.h5";
long H5fid = -1;
long H5strdid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = null;
@@ -129,7 +128,7 @@ public class TestH5T {
@Test
public void testH5Tarray_create() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long[] adims = { 3, 5 };
try {
@@ -148,7 +147,7 @@ public class TestH5T {
@Test
public void testH5Tget_array_ndims() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
@@ -176,7 +175,7 @@ public class TestH5T {
@Test
public void testH5Tget_array_dims() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
long[] rdims = new long[2];
@@ -207,7 +206,7 @@ public class TestH5T {
@Test
public void testH5Tenum_functions() {
long filetype_id =-1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String enum_type ="Enum_type";
byte[] enum_val = new byte[1];
String enum_name = null;
@@ -275,7 +274,7 @@ public class TestH5T {
@Test
public void testH5Tenum_create_functions() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
byte[] enum_val = new byte[1];
// Create a enumerate datatype
@@ -315,7 +314,7 @@ public class TestH5T {
@Test
public void testH5Topaque_functions() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String opaque_name = null;
// Create a opaque datatype
@@ -345,7 +344,7 @@ public class TestH5T {
@Test
public void testH5Tvlen_create() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
@@ -368,7 +367,7 @@ public class TestH5T {
@Test
public void testH5Tis_variable_str() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
@@ -399,7 +398,7 @@ public class TestH5T {
@Test
public void testH5Tcompound_functions() {
long filetype_id =-1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
// Create a compound datatype
try {

13
java/test/TestH5Tbasic.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -40,7 +39,7 @@ public class TestH5Tbasic {
@Test
public void testH5Tcopy() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("H5.H5Tcopy",H5strdid > 0);
@@ -57,7 +56,7 @@ public class TestH5Tbasic {
@Test
public void testH5Tequal() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("H5.H5Tcopy",H5strdid > 0);
@@ -76,7 +75,7 @@ public class TestH5Tbasic {
@Test
public void testH5Tequal_not() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_STD_U64LE);
assertTrue("H5.H5Tcopy",H5strdid > 0);
@@ -98,8 +97,8 @@ public class TestH5Tbasic {
String[] strs = {"a1234","b1234"};
int srcLen = 5;
int dstLen = 10;
long srcId = -1;
long dstId = -1;
long srcId = HDF5Constants.H5I_INVALID_HID;
long dstId = HDF5Constants.H5I_INVALID_HID;
int dimSize = strs.length;
byte[] buf = new byte[dimSize*dstLen];
@@ -131,7 +130,7 @@ public class TestH5Tbasic {
@Test
public void testH5Torder_size() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
// Fixed length string
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);

1
java/test/TestH5Tparams.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

51
java/test/TestH5VL.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -72,28 +71,28 @@ public class TestH5VL {
@Test
public void testH5VLget_connector_id() {
String H5_FILE = "testFvl.h5";
String H5_FILE = "testFvl.h5";
long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
long native_id = H5.H5VLget_connector_id(H5fid);
assertTrue("H5.H5VLget_connector_id", native_id >= 0);
try {
long native_id = H5.H5VLget_connector_id(H5fid);
assertTrue("H5.H5VLget_connector_id", native_id >= 0);
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector. Only check for the native connector
* if this isn't set.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null)
assertEquals(HDF5Constants.H5VL_NATIVE, native_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5VLget_connector_id " + err);
}
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector. Only check for the native connector
* if this isn't set.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null)
assertEquals(HDF5Constants.H5VL_NATIVE, native_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5VLget_connector_id " + err);
}
finally {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
@@ -139,14 +138,14 @@ public class TestH5VL {
try {
String native_name = H5.H5VLget_connector_name(H5fid);
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector. Only check for the native connector
* if this isn't set.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null)
assertTrue("H5.H5VLget_connector_name H5VL_NATIVE", native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME)==0);
/*
* If HDF5_VOL_CONNECTOR is set, this might not be the
* native connector. Only check for the native connector
* if this isn't set.
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null)
assertTrue("H5.H5VLget_connector_name H5VL_NATIVE", native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME)==0);
}
catch (Throwable err) {
err.printStackTrace();

1
java/test/TestH5Z.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *

76
java/test/junit.sh.in
View File

@@ -45,6 +45,8 @@ HDFLIB_HOME="$top_srcdir/java/lib"
BLDDIR="."
BLDLIBDIR="$BLDDIR/testlibs"
HDFTEST_HOME="$top_srcdir/java/test"
TOOLS_TESTFILES="$top_srcdir/tools/testfiles"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
TESTJARFILE=jar@PACKAGE_TARNAME@test.jar
test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
@@ -88,10 +90,12 @@ $HDFTEST_HOME/testfiles/JUnit-TestH5T.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Dparams.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5D.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Dplist.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Drw.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Lparams.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Lbasic.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Lcreate.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5R.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Rref.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5P.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5PData.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Pfapl.txt
@@ -100,6 +104,7 @@ $HDFTEST_HOME/testfiles/JUnit-TestH5Pfaplhdfs.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Pvirtual.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Plist.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5A.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Arw.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Oparams.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Obasic.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Ocreate.txt
@@ -145,7 +150,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
if [ "$IS_DARWIN" = "yes" ]; then
if [ "$IS_DARWIN" = "yes" ]; then
(cd testlibs; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
@@ -247,6 +252,12 @@ COPY_DATAFILES_TO_BLDDIR()
$CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateL2.hdf
$CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateO1.hdf
$CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateO2.hdf
$CP -f $TOOLS_TESTFILES/trefer_reg.h5 $BLDDIR/trefer_reg.h5
$CP -f $TOOLS_TESTFILES/trefer_attr.h5 $BLDDIR/trefer_attr.h5
$CP -f $TOOLS_TESTFILES/tdatareg.h5 $BLDDIR/tdatareg.h5
$CP -f $TOOLS_TESTFILES/tattrreg.h5 $BLDDIR/tattrreg.h5
$CP -f $TOOLS_TESTFILES/tintsattrs.h5 $BLDDIR/tintsattrs.h5
$CP -f $TOOLS_TESTFILES/tfloatsattrs.h5 $BLDDIR/tfloatsattrs.h5
}
CLEAN_DATAFILES_AND_BLDDIR()
@@ -662,6 +673,27 @@ else
test yes = "$verbose" && $DIFF JUnit-TestH5D.txt JUnit-TestH5D.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Drw"
TESTING JUnit-TestH5Drw
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Drw > JUnit-TestH5Drw.ext)
# Extract file name, line number, version and thread IDs because they may be different
sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
-e 's/line [0-9]*/line (number)/' \
-e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \
-e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
-e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
JUnit-TestH5Drw.ext > JUnit-TestH5Drw.out
if diff JUnit-TestH5Drw.out JUnit-TestH5Drw.txt > /dev/null; then
echo " PASSED JUnit-TestH5Drw"
else
echo "**FAILED** JUnit-TestH5Drw"
echo " Expected result differs from actual result"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF JUnit-TestH5Drw.txt JUnit-TestH5Drw.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist"
TESTING JUnit-TestH5Dplist
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist > JUnit-TestH5Dplist.ext)
@@ -767,6 +799,27 @@ else
test yes = "$verbose" && $DIFF JUnit-TestH5R.txt JUnit-TestH5R.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Rref"
TESTING JUnit-TestH5Rref
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Rref > JUnit-TestH5Rref.ext)
# Extract file name, line number, version and thread IDs because they may be different
sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
-e 's/line [0-9]*/line (number)/' \
-e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \
-e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
-e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
JUnit-TestH5Rref.ext > JUnit-TestH5Rref.out
if diff JUnit-TestH5Rref.out JUnit-TestH5Rref.txt > /dev/null; then
echo " PASSED JUnit-TestH5Rref"
else
echo "**FAILED** JUnit-TestH5Rref"
echo " Expected result differs from actual result"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF JUnit-TestH5Rref.txt JUnit-TestH5Rref.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P"
TESTING JUnit-TestH5P
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P > JUnit-TestH5P.ext)
@@ -893,6 +946,27 @@ else
test yes = "$verbose" && $DIFF JUnit-TestH5A.txt JUnit-TestH5A.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Arw"
TESTING JUnit-TestH5Arw
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Arw > JUnit-TestH5Arw.ext)
# Extract file name, line number, version and thread IDs because they may be different
sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
-e 's/line [0-9]*/line (number)/' \
-e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \
-e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
-e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
JUnit-TestH5Arw.ext > JUnit-TestH5Arw.out
if diff JUnit-TestH5Arw.out JUnit-TestH5Arw.txt > /dev/null; then
echo " PASSED JUnit-TestH5Arw"
else
echo "**FAILED** JUnit-TestH5Arw"
echo " Expected result differs from actual result"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF JUnit-TestH5Arw.txt JUnit-TestH5Arw.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams"
TESTING JUnit-TestH5Oparams
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams > JUnit-TestH5Oparams.ext)

6
java/test/testfiles/JUnit-TestH5.txt
View File

@@ -1,10 +1,14 @@
JUnit version 4.11
.testH5export_region
.testH5get_libversion_null_param
.testJ2C
.testH5export_dataset
.testIsSerializable
.testH5export_attrdataset
.testH5garbage_collect
.testH5error_off
.testH5export_regdataset
.testH5export_attribute
.serializeToDisk
.testH5open
.testH5check_version
@@ -13,5 +17,5 @@ JUnit version 4.11
Time: XXXX
OK (11 tests)
OK (15 tests)

13
java/test/testfiles/JUnit-TestH5Arw.txt Normal file
View File

@@ -0,0 +1,13 @@
JUnit version 4.11
.testH5Aread_128bit_floats
.testH5Aread_64bit_floats
.testH5Aread_8bit_ints
.testH5Aread_32bit_ints
.testH5Aread_64bit_ints
.testH5Aread_32bit_floats
.testH5Aread_16bit_ints
Time: XXXX
OK (7 tests)

13
java/test/testfiles/JUnit-TestH5Drw.txt Normal file
View File

@@ -0,0 +1,13 @@
JUnit version 4.11
.testH5Dread_32bit_floats
.testH5Dread_32bit_ints
.testH5Dread_64bit_ints
.testH5Dread_64bit_floats
.testH5Dread_8bit_ints
.testH5Dread_128bit_floats
.testH5Dread_16bit_ints
Time: XXXX
OK (7 tests)

3
java/test/testfiles/JUnit-TestH5Pfapl.txt
View File

@@ -28,6 +28,7 @@ JUnit version 4.11
.testH5Pset_elink_fapl
.testH5P_hyper_vector_size
.testH5P_gc_references
.testH5P_file_locking
.testH5P_family_offset
.testH5P_fapl_core
.testH5P_fapl_muti
@@ -37,5 +38,5 @@ JUnit version 4.11
Time: XXXX
OK (35 tests)
OK (36 tests)

10
java/test/testfiles/JUnit-TestH5Rref.txt Normal file
View File

@@ -0,0 +1,10 @@
JUnit version 4.11
.testH5Rget_region_dataset
.testH5Rget_object
.testH5Rget_region_attribute
.testH5Rget_obj_type3
Time: XXXX
OK (4 tests)

16
java/test/testfiles/JUnit-TestH5Sbasic.txt
View File

@@ -5,18 +5,32 @@ JUnit version 4.11
.testH5Sdecode_null
.testH5Screate_simple_dims_exceed
.testH5Screate_simple_unlimted_1d
.testH5Sselect_intersect_block_rank_start
.testH5Sget_regular_hyperslab_invalid
.testH5Sselect_adjust_rank_offset
.testH5Screate_simple_dims_invalid
.testH5Screate_scalar
.testH5Screate_simple
.testH5Sselect_project_intersection_invalid
.testH5Screate_simple_rank_invalid
.testH5Sget_simple_extent_type_invalid
.testH5Scombine_hyperslab_invalid
.testH5Scombine_hyperslab_null_count
.testH5Scombine_hyperslab_null_start
.testH5Sencode_invalid
.testH5Screate_null
.testH5Screate_simple_extent
.testH5Screate_invalid
.testH5Sselect_intersect_block_invalid
.testH5Sselect_adjust_invalid
.testH5Screate_simple_unlimted
.testH5Sselect_shape_same_invalid
.testH5Smodify_select_invalid
.testH5Scombine_select_invalid
.testH5Sselect_copy_invalid
.testH5Sselect_intersect_block_rank_end
Time: XXXX
OK (16 tests)
OK (30 tests)