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Brings java wrapper updates from develop

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The wrappers compile but fail tests due to some missing develop
functionality
This commit is contained in:
Dana Robinson
2021-05-06 14:07:08 -07:00
parent 457b199a38
commit f2cb86499e
219 changed files with 9672 additions and 2742 deletions
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11
java/examples/datasets/H5Ex_D_Alloc.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -65,11 +64,11 @@ public class H5Ex_D_Alloc {
}
private static void allocation() {
long file_id = -1;
long filespace_id = -1;
long dataset_id1 = -1;
long dataset_id2 = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id1 = HDF5Constants.H5I_INVALID_HID;
long dataset_id2 = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
int space_status = 0;

15
java/examples/datasets/H5Ex_D_Checksum.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -93,10 +92,10 @@ public class H5Ex_D_Checksum {
}
private static void writeChecksum() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -193,9 +192,9 @@ public class H5Ex_D_Checksum {
}
private static void readChecksum() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

17
java/examples/datasets/H5Ex_D_Chunk.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -66,10 +65,10 @@ public class H5Ex_D_Chunk {
}
private static void writeChunk() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -201,10 +200,10 @@ public class H5Ex_D_Chunk {
}
private static void readChunk() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

17
java/examples/datasets/H5Ex_D_Compact.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -60,10 +59,10 @@ public class H5Ex_D_Compact {
}
private static void writeCompact() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -163,10 +162,10 @@ public class H5Ex_D_Compact {
}
private static void readCompact() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file and dataset using the default properties.

15
java/examples/datasets/H5Ex_D_External.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,10 +33,10 @@ public class H5Ex_D_External {
private static final int NAME_BUF_SIZE = 32;
private static void writeExternal() {
long file_id = -1;
long dcpl_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -138,9 +137,9 @@ public class H5Ex_D_External {
}
private static void readExternal() {
long file_id = -1;
long dcpl_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
String[] Xname = new String[1];

9
java/examples/datasets/H5Ex_D_FillValue.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -40,10 +39,10 @@ public class H5Ex_D_FillValue {
private static final int FILLVAL = 99;
private static void fillValue() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };

15
java/examples/datasets/H5Ex_D_Gzip.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -95,10 +94,10 @@ public class H5Ex_D_Gzip {
}
private static void writeGzip() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -196,9 +195,9 @@ public class H5Ex_D_Gzip {
}
private static void readGzip() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

15
java/examples/datasets/H5Ex_D_Hyperslab.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,9 +33,9 @@ public class H5Ex_D_Hyperslab {
private static final int RANK = 2;
private static void writeHyperslab() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -142,10 +141,10 @@ public class H5Ex_D_Hyperslab {
}
private static void readHyperslab() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

17
java/examples/datasets/H5Ex_D_Nbit.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -96,11 +95,11 @@ public class H5Ex_D_Nbit {
}
private static void writeData() throws Exception {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dtype_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dtype_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -157,9 +156,9 @@ public class H5Ex_D_Nbit {
}
private static void readData() throws Exception {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

11
java/examples/datasets/H5Ex_D_ReadWrite.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -32,9 +31,9 @@ public class H5Ex_D_ReadWrite {
private static final int RANK = 2;
private static void WriteDataset() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -109,8 +108,8 @@ public class H5Ex_D_ReadWrite {
}
private static void ReadDataset() {
long file_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.

15
java/examples/datasets/H5Ex_D_Shuffle.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -122,10 +121,10 @@ public class H5Ex_D_Shuffle {
}
private static void writeShuffle() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -229,9 +228,9 @@ public class H5Ex_D_Shuffle {
}
private static void readShuffle() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

15
java/examples/datasets/H5Ex_D_Sofloat.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -96,10 +95,10 @@ public class H5Ex_D_Sofloat {
}
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
double[][] dset_data = new double[DIM_X][DIM_Y];
@@ -213,9 +212,9 @@ public class H5Ex_D_Sofloat {
}
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
double[][] dset_data = new double[DIM_X][DIM_Y];
// Open file using the default properties.

15
java/examples/datasets/H5Ex_D_Soint.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -96,10 +95,10 @@ public class H5Ex_D_Soint {
}
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -195,9 +194,9 @@ public class H5Ex_D_Soint {
}
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.

15
java/examples/datasets/H5Ex_D_Szip.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -95,10 +94,10 @@ public class H5Ex_D_Szip {
}
private static void writeSzip() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -196,9 +195,9 @@ public class H5Ex_D_Szip {
}
private static void readSzip() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

15
java/examples/datasets/H5Ex_D_Transform.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -36,10 +35,10 @@ public class H5Ex_D_Transform {
private static String RTRANSFORM = "x-1";
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dxpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dxpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -144,9 +143,9 @@ public class H5Ex_D_Transform {
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dxpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dxpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file using the default properties.

21
java/examples/datasets/H5Ex_D_UnlimitedAdd.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -39,10 +38,10 @@ public class H5Ex_D_UnlimitedAdd {
private static final int NDIMS = 2;
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -143,9 +142,9 @@ public class H5Ex_D_UnlimitedAdd {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] start = { 0, 0 };
@@ -293,9 +292,9 @@ public class H5Ex_D_UnlimitedAdd {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;

23
java/examples/datasets/H5Ex_D_UnlimitedGzip.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -99,10 +98,10 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -200,9 +199,9 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] start = { 0, 0 };
@@ -350,10 +349,10 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;

21
java/examples/datasets/H5Ex_D_UnlimitedMod.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -39,10 +38,10 @@ public class H5Ex_D_UnlimitedMod {
private static final int NDIMS = 2;
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -143,9 +142,9 @@ public class H5Ex_D_UnlimitedMod {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
int[][] dset_data;
@@ -279,9 +278,9 @@ public class H5Ex_D_UnlimitedMod {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;

11
java/examples/datasets/JavaDatasetExample.sh.in
View File

@@ -1,7 +1,6 @@
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
@@ -15,6 +14,7 @@
top_builddir=@top_builddir@
top_srcdir=@top_srcdir@
srcdir=@srcdir@
IS_DARWIN="@H5_IS_DARWIN@"
USE_FILTER_SZIP="@USE_FILTER_SZIP@"
USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
@@ -36,8 +36,8 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
BLDLIBDIR="$BLDDIR/testlibs"
HDFTEST_HOME="$top_srcdir/java/examples/datasets"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
TESTJARFILE=jar@PACKAGE_TARNAME@datasets.jar
@@ -113,6 +113,13 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
if [ "$IS_DARWIN" = "yes" ]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
echo $exist_path; \
install_name_tool -change $exist_path @rpath/libhdf5.dylib libhdf5_java.dylib)
fi
# copy jar files. Used -f to make sure get a new copy
for tstfile in $COPY_JARTESTFILES
do