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Brings java wrapper updates from develop

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The wrappers compile but fail tests due to some missing develop
functionality
This commit is contained in:
Dana Robinson
2021-05-06 14:07:08 -07:00
parent 457b199a38
commit f2cb86499e
219 changed files with 9672 additions and 2742 deletions
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11
java/examples/datasets/H5Ex_D_Alloc.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -65,11 +64,11 @@ public class H5Ex_D_Alloc {
}
private static void allocation() {
long file_id = -1;
long filespace_id = -1;
long dataset_id1 = -1;
long dataset_id2 = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id1 = HDF5Constants.H5I_INVALID_HID;
long dataset_id2 = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
int space_status = 0;

15
java/examples/datasets/H5Ex_D_Checksum.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -93,10 +92,10 @@ public class H5Ex_D_Checksum {
}
private static void writeChecksum() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -193,9 +192,9 @@ public class H5Ex_D_Checksum {
}
private static void readChecksum() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

17
java/examples/datasets/H5Ex_D_Chunk.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -66,10 +65,10 @@ public class H5Ex_D_Chunk {
}
private static void writeChunk() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -201,10 +200,10 @@ public class H5Ex_D_Chunk {
}
private static void readChunk() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

17
java/examples/datasets/H5Ex_D_Compact.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -60,10 +59,10 @@ public class H5Ex_D_Compact {
}
private static void writeCompact() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -163,10 +162,10 @@ public class H5Ex_D_Compact {
}
private static void readCompact() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file and dataset using the default properties.

15
java/examples/datasets/H5Ex_D_External.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,10 +33,10 @@ public class H5Ex_D_External {
private static final int NAME_BUF_SIZE = 32;
private static void writeExternal() {
long file_id = -1;
long dcpl_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -138,9 +137,9 @@ public class H5Ex_D_External {
}
private static void readExternal() {
long file_id = -1;
long dcpl_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
String[] Xname = new String[1];

9
java/examples/datasets/H5Ex_D_FillValue.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -40,10 +39,10 @@ public class H5Ex_D_FillValue {
private static final int FILLVAL = 99;
private static void fillValue() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };

15
java/examples/datasets/H5Ex_D_Gzip.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -95,10 +94,10 @@ public class H5Ex_D_Gzip {
}
private static void writeGzip() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -196,9 +195,9 @@ public class H5Ex_D_Gzip {
}
private static void readGzip() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

15
java/examples/datasets/H5Ex_D_Hyperslab.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,9 +33,9 @@ public class H5Ex_D_Hyperslab {
private static final int RANK = 2;
private static void writeHyperslab() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -142,10 +141,10 @@ public class H5Ex_D_Hyperslab {
}
private static void readHyperslab() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

17
java/examples/datasets/H5Ex_D_Nbit.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -96,11 +95,11 @@ public class H5Ex_D_Nbit {
}
private static void writeData() throws Exception {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dtype_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dtype_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -157,9 +156,9 @@ public class H5Ex_D_Nbit {
}
private static void readData() throws Exception {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

11
java/examples/datasets/H5Ex_D_ReadWrite.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -32,9 +31,9 @@ public class H5Ex_D_ReadWrite {
private static final int RANK = 2;
private static void WriteDataset() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -109,8 +108,8 @@ public class H5Ex_D_ReadWrite {
}
private static void ReadDataset() {
long file_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.

15
java/examples/datasets/H5Ex_D_Shuffle.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -122,10 +121,10 @@ public class H5Ex_D_Shuffle {
}
private static void writeShuffle() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -229,9 +228,9 @@ public class H5Ex_D_Shuffle {
}
private static void readShuffle() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

15
java/examples/datasets/H5Ex_D_Sofloat.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -96,10 +95,10 @@ public class H5Ex_D_Sofloat {
}
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
double[][] dset_data = new double[DIM_X][DIM_Y];
@@ -213,9 +212,9 @@ public class H5Ex_D_Sofloat {
}
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
double[][] dset_data = new double[DIM_X][DIM_Y];
// Open file using the default properties.

15
java/examples/datasets/H5Ex_D_Soint.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -96,10 +95,10 @@ public class H5Ex_D_Soint {
}
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -195,9 +194,9 @@ public class H5Ex_D_Soint {
}
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.

15
java/examples/datasets/H5Ex_D_Szip.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -95,10 +94,10 @@ public class H5Ex_D_Szip {
}
private static void writeSzip() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -196,9 +195,9 @@ public class H5Ex_D_Szip {
}
private static void readSzip() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.

15
java/examples/datasets/H5Ex_D_Transform.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -36,10 +35,10 @@ public class H5Ex_D_Transform {
private static String RTRANSFORM = "x-1";
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dxpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dxpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -144,9 +143,9 @@ public class H5Ex_D_Transform {
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dxpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dxpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file using the default properties.

21
java/examples/datasets/H5Ex_D_UnlimitedAdd.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -39,10 +38,10 @@ public class H5Ex_D_UnlimitedAdd {
private static final int NDIMS = 2;
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -143,9 +142,9 @@ public class H5Ex_D_UnlimitedAdd {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] start = { 0, 0 };
@@ -293,9 +292,9 @@ public class H5Ex_D_UnlimitedAdd {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;

23
java/examples/datasets/H5Ex_D_UnlimitedGzip.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -99,10 +98,10 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -200,9 +199,9 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] start = { 0, 0 };
@@ -350,10 +349,10 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;

21
java/examples/datasets/H5Ex_D_UnlimitedMod.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -39,10 +38,10 @@ public class H5Ex_D_UnlimitedMod {
private static final int NDIMS = 2;
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -143,9 +142,9 @@ public class H5Ex_D_UnlimitedMod {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
int[][] dset_data;
@@ -279,9 +278,9 @@ public class H5Ex_D_UnlimitedMod {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;

11
java/examples/datasets/JavaDatasetExample.sh.in
View File

@@ -1,7 +1,6 @@
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
@@ -15,6 +14,7 @@
top_builddir=@top_builddir@
top_srcdir=@top_srcdir@
srcdir=@srcdir@
IS_DARWIN="@H5_IS_DARWIN@"
USE_FILTER_SZIP="@USE_FILTER_SZIP@"
USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
@@ -36,8 +36,8 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
BLDLIBDIR="$BLDDIR/testlibs"
HDFTEST_HOME="$top_srcdir/java/examples/datasets"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
TESTJARFILE=jar@PACKAGE_TARNAME@datasets.jar
@@ -113,6 +113,13 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
if [ "$IS_DARWIN" = "yes" ]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
echo $exist_path; \
install_name_tool -change $exist_path @rpath/libhdf5.dylib libhdf5_java.dylib)
fi
# copy jar files. Used -f to make sure get a new copy
for tstfile in $COPY_JARTESTFILES
do

19
java/examples/datatypes/H5Ex_T_Array.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,11 +33,11 @@ public class H5Ex_T_Array {
private static final int NDIMS = 2;
private static void CreateDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
@@ -152,10 +151,10 @@ public class H5Ex_T_Array {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data;

25
java/examples/datatypes/H5Ex_T_ArrayAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -35,12 +34,12 @@ public class H5Ex_T_ArrayAttribute {
private static final int NDIMS = 2;
private static void CreateDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
@@ -84,7 +83,7 @@ public class H5Ex_T_ArrayAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -175,11 +174,11 @@ public class H5Ex_T_ArrayAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data;

13
java/examples/datatypes/H5Ex_T_Bit.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -32,9 +31,9 @@ public class H5Ex_T_Bit {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -116,9 +115,9 @@ public class H5Ex_T_Bit {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

19
java/examples/datatypes/H5Ex_T_BitAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -33,10 +32,10 @@ public class H5Ex_T_BitAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -66,7 +65,7 @@ public class H5Ex_T_BitAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -139,10 +138,10 @@ public class H5Ex_T_BitAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

13
java/examples/datatypes/H5Ex_T_Commit.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -101,9 +100,9 @@ public class H5Ex_T_Commit {
}
private static void CreateDataType() {
long file_id = -1;
long strtype_id = -1;
long filetype_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
Sensor_Datatype datatypes = new Sensor_Datatype();
// Create a new file using default properties.
try {
@@ -183,9 +182,9 @@ public class H5Ex_T_Commit {
}
private static void ReadDataType() {
long file_id = -1;
long typeclass_id = -1;
long filetype_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long typeclass_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
// Open an existing file.
try {

23
java/examples/datatypes/H5Ex_T_Compound.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -122,12 +121,12 @@ public class H5Ex_T_Compound {
}
private static void CreateDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data = new Sensor[DIM0];
byte[] dset_data = null;
@@ -286,11 +285,11 @@ public class H5Ex_T_Compound {
}
private static void ReadDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data2;
byte[] dset_data;

29
java/examples/datatypes/H5Ex_T_CompoundAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -125,13 +124,13 @@ public class H5Ex_T_CompoundAttribute {
}
private static void CreateDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data = new Sensor[DIM0];
byte[] dset_data = null;
@@ -205,7 +204,7 @@ public class H5Ex_T_CompoundAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -310,12 +309,12 @@ public class H5Ex_T_CompoundAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data2;
byte[] dset_data;

13
java/examples/datatypes/H5Ex_T_Float.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -36,9 +35,9 @@ public class H5Ex_T_Float {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data = new double[DIM0][DIM1];
@@ -120,9 +119,9 @@ public class H5Ex_T_Float {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data;

19
java/examples/datatypes/H5Ex_T_FloatAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -37,10 +36,10 @@ public class H5Ex_T_FloatAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data = new double[DIM0][DIM1];
@@ -66,7 +65,7 @@ public class H5Ex_T_FloatAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -139,10 +138,10 @@ public class H5Ex_T_FloatAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data;

13
java/examples/datatypes/H5Ex_T_Integer.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -34,9 +33,9 @@ public class H5Ex_T_Integer {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -117,9 +116,9 @@ public class H5Ex_T_Integer {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

19
java/examples/datatypes/H5Ex_T_IntegerAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -35,10 +34,10 @@ public class H5Ex_T_IntegerAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -64,7 +63,7 @@ public class H5Ex_T_IntegerAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -137,10 +136,10 @@ public class H5Ex_T_IntegerAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

25
java/examples/datatypes/H5Ex_T_ObjectReference.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -65,11 +64,11 @@ public class H5Ex_T_ObjectReference {
}
private static void writeObjRef() {
long file_id = -1;
long dataspace_id = -1;
long filespace_id = -1;
long group_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][8];
@@ -90,9 +89,9 @@ public class H5Ex_T_ObjectReference {
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -106,7 +105,7 @@ public class H5Ex_T_ObjectReference {
HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = -1;
group_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -187,11 +186,11 @@ public class H5Ex_T_ObjectReference {
}
private static void readObjRef() {
long file_id = -1;
long dataset_id = -1;
long dataspace_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
int object_type = -1;
long object_id = -1;
long object_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data;

29
java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -67,11 +66,11 @@ public class H5Ex_T_ObjectReferenceAttribute {
}
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long group_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][8];
@@ -92,9 +91,9 @@ public class H5Ex_T_ObjectReferenceAttribute {
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -108,7 +107,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = -1;
group_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -139,7 +138,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -212,12 +211,12 @@ public class H5Ex_T_ObjectReferenceAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
int object_type = -1;
long object_id = -1;
long object_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data;

19
java/examples/datatypes/H5Ex_T_Opaque.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -32,10 +31,10 @@ public class H5Ex_T_Opaque {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long datatype_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data = new byte[DIM0 * LEN];
byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
@@ -138,11 +137,11 @@ public class H5Ex_T_Opaque {
}
private static void ReadDataset() {
long file_id = -1;
long datatype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long type_len = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long type_len = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data;
String tag_name = null;

23
java/examples/datatypes/H5Ex_T_OpaqueAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -33,11 +32,11 @@ public class H5Ex_T_OpaqueAttribute {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long datatype_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data = new byte[DIM0 * LEN];
byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
@@ -65,7 +64,7 @@ public class H5Ex_T_OpaqueAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -158,11 +157,11 @@ public class H5Ex_T_OpaqueAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long datatype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long type_len = -1;
long[] dims = { DIM0 };
byte[] dset_data;

21
java/examples/datatypes/H5Ex_T_String.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -32,11 +31,11 @@ public class H5Ex_T_String {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][SDIM];
StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
@@ -156,11 +155,11 @@ public class H5Ex_T_String {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long sdim = 0;
long[] dims = { DIM0 };
byte[][] dset_data;

27
java/examples/datatypes/H5Ex_T_StringAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -33,12 +32,12 @@ public class H5Ex_T_StringAttribute {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][SDIM];
StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
@@ -80,7 +79,7 @@ public class H5Ex_T_StringAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -179,12 +178,12 @@ public class H5Ex_T_StringAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long sdim = 0;
long[] dims = { DIM0 };
byte[][] dset_data;

15
java/examples/datatypes/H5Ex_T_VLString.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -26,10 +25,10 @@ public class H5Ex_T_VLString
private static String DATASETNAME = "DS1";
private static void createDataset() {
long file_id = -1;
long type_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long type_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int rank = 1;
String[] str_data = { "Parting", "is such", "sweet", "sorrow." };
long[] dims = { str_data.length };
@@ -93,9 +92,9 @@ public class H5Ex_T_VLString
}
private static void readDataset() {
long file_id = -1;
long type_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long type_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
String[] str_data = { "", "", "", "" };
try {

11
java/examples/datatypes/JavaDatatypeExample.sh.in
View File

@@ -1,7 +1,6 @@
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
@@ -15,6 +14,7 @@
top_builddir=@top_builddir@
top_srcdir=@top_srcdir@
srcdir=@srcdir@
IS_DARWIN="@H5_IS_DARWIN@"
TESTNAME=EX_Datatypes
EXIT_SUCCESS=0
@@ -33,8 +33,8 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
BLDLIBDIR="$BLDDIR/testlibs"
HDFTEST_HOME="$top_srcdir/java/examples/datatypes"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
TESTJARFILE=jar@PACKAGE_TARNAME@datatypes.jar
@@ -110,6 +110,13 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
if [ "$IS_DARWIN" = "yes" ]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
echo $exist_path; \
install_name_tool -change $exist_path @rpath/libhdf5.dylib libhdf5_java.dylib)
fi
# copy jar files. Used -f to make sure get a new copy
for tstfile in $COPY_JARTESTFILES
do

7
java/examples/groups/H5Ex_G_Compact.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -60,9 +59,9 @@ public class H5Ex_G_Compact {
}
public static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long fapl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
H5G_info_t ginfo;
long size;

9
java/examples/groups/H5Ex_G_Corder.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -25,10 +24,10 @@ public class H5Ex_G_Corder {
private static String FILE = "H5Ex_G_Corder.h5";
private static void CreateGroup() throws Exception {
long file_id = -1;
long group_id = -1;
long subgroup_id = -1;
long gcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long subgroup_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
int status;
H5G_info_t ginfo;
int i;

5
java/examples/groups/H5Ex_G_Create.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -25,8 +24,8 @@ public class H5Ex_G_Create {
private static String GROUPNAME = "G1";
private static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {

7
java/examples/groups/H5Ex_G_Intermediate.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -31,9 +30,9 @@ public class H5Ex_G_Intermediate {
private void CreateGroup() throws Exception {
long file_id = -1;
long group_id = -1;
long gcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
try {
// Create a new file_id using the default properties.

3
java/examples/groups/H5Ex_G_Iterate.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -58,7 +57,7 @@ public class H5Ex_G_Iterate {
}
private static void do_iterate() {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
// Open a file using default properties.
try {

11
java/examples/groups/H5Ex_G_Phase.java
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@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -60,11 +59,11 @@ public class H5Ex_G_Phase {
}
private static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long subgroup_id = -1;
long fapl_id = -1;
long gcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long subgroup_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
H5G_info_t ginfo;
String name = "G0"; // Name of subgroup_id
int i;

3
java/examples/groups/H5Ex_G_Traverse.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -43,7 +42,7 @@ public class H5Ex_G_Traverse {
public static H5L_iterate_t iter_cb = new H5L_iter_callbackT();
private static void OpenGroup() {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
H5O_info_t infobuf;
opdata od = new opdata();

3
java/examples/groups/H5Ex_G_Visit.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -47,7 +46,7 @@ public class H5Ex_G_Visit {
private void VisitGroup() throws Exception {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
try {
// Open file

12
java/examples/groups/JavaGroupExample.sh.in
View File

@@ -14,6 +14,7 @@
top_builddir=@top_builddir@
top_srcdir=@top_srcdir@
srcdir=@srcdir@
IS_DARWIN="@H5_IS_DARWIN@"
TESTNAME=EX_Groups
EXIT_SUCCESS=0
@@ -32,9 +33,9 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
BLDLIBDIR="$top_builddir/hdf5/lib"
BLDITERDIR="./groups"
BLDDIR="."
BLDLIBDIR="$BLDDIR/testlibs"
BLDITERDIR="./groups"
HDFTEST_HOME="$top_srcdir/java/examples/groups"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
TESTJARFILE=jar@PACKAGE_TARNAME@groups.jar
@@ -104,6 +105,13 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
if [ "$IS_DARWIN" = "yes" ]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
echo $exist_path; \
install_name_tool -change $exist_path @rpath/libhdf5.dylib libhdf5_java.dylib)
fi
# copy jar files. Used -f to make sure get a new copy
for tstfile in $COPY_JARTESTFILES
do

9
java/examples/intro/H5_CreateAttribute.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -28,10 +27,10 @@ public class H5_CreateAttribute {
private static String DATASETATTRIBUTE = "Units";
private static void CreateDatasetAttribute() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims1 = { DIM_X, DIM_Y };
long[] dims = { 2 };
int[] attr_data = { 100, 200 };

7
java/examples/intro/H5_CreateDataset.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -27,9 +26,9 @@ public class H5_CreateDataset {
private static final int DIM_Y = 6;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
// Create a new file using default properties.

3
java/examples/intro/H5_CreateFile.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -24,7 +23,7 @@ public class H5_CreateFile {
static final String FILENAME = "H5_CreateFile.h5";
private static void CreateFile() {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {

5
java/examples/intro/H5_CreateGroup.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -25,8 +24,8 @@ public class H5_CreateGroup {
private static String GROUPNAME = "MyGroup";
private static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {

9
java/examples/intro/H5_CreateGroupAbsoluteRelative.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -27,10 +26,10 @@ public class H5_CreateGroupAbsoluteRelative {
private static String GROUPNAME_B = "GroupB";
private static void CreateGroupAbsoluteAndRelative() {
long file_id = -1;
long group1_id = -1;
long group2_id = -1;
long group3_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group1_id = HDF5Constants.H5I_INVALID_HID;
long group2_id = HDF5Constants.H5I_INVALID_HID;
long group3_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {

17
java/examples/intro/H5_CreateGroupDataset.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -32,12 +31,12 @@ public class H5_CreateGroupDataset {
private static final int DIM2_Y = 10;
private static void h5_crtgrpd() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long group_id = -1;
long group1_id = -1;
long group2_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long group1_id = HDF5Constants.H5I_INVALID_HID;
long group2_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset1_data = new int[DIM1_X][DIM1_Y];
int[][] dset2_data = new int[DIM2_X][DIM2_Y];
long[] dims1 = { DIM1_X, DIM1_Y };
@@ -108,7 +107,7 @@ public class H5_CreateGroupDataset {
try {
if (dataspace_id >= 0)
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -118,7 +117,7 @@ public class H5_CreateGroupDataset {
try {
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();

7
java/examples/intro/H5_ReadWrite.java
View File

@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -27,9 +26,9 @@ public class H5_ReadWrite {
private static final int DIM_Y = 6;
private static void ReadWriteDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];

11
java/examples/intro/JavaIntroExample.sh.in
View File

@@ -1,7 +1,6 @@
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
@@ -15,6 +14,7 @@
top_builddir=@top_builddir@
top_srcdir=@top_srcdir@
srcdir=@srcdir@
IS_DARWIN="@H5_IS_DARWIN@"
TESTNAME=EX_Intro
EXIT_SUCCESS=0
@@ -33,8 +33,8 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
BLDLIBDIR="$BLDDIR/testlibs"
HDFTEST_HOME="$top_srcdir/java/examples/intro"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
TESTJARFILE=jar@PACKAGE_TARNAME@intro.jar
@@ -99,6 +99,13 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
if [ "$IS_DARWIN" = "yes" ]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
echo $exist_path; \
install_name_tool -change $exist_path @rpath/libhdf5.dylib libhdf5_java.dylib)
fi
# copy jar files. Used -f to make sure get a new copy
for tstfile in $COPY_JARTESTFILES
do