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[svn-r29873] Java add missing APIs.

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Adjust whitespace in H5.java for exception indentation.
Adjust whitespace in JNI for function signature formatting.
This commit is contained in:
Allen Byrne
2016-05-04 10:52:40 -05:00
parent 54316ab542
commit f1633a5fe2
43 changed files with 3664 additions and 1949 deletions
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85
java/src/hdf/hdf5lib/H5.java
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@@ -645,7 +645,7 @@ public class H5 implements java.io.Serializable {
* - name is null.
**/
public synchronized static native int H5Adelete(long loc_id, String name) throws HDF5LibraryException,
NullPointerException;
NullPointerException;
/**
* H5Adelete_by_idx removes an attribute, specified by its location in an index, from an object.
@@ -710,7 +710,7 @@ public class H5 implements java.io.Serializable {
* - attr_name is null.
**/
public synchronized static native boolean H5Aexists(long obj_id, String attr_name) throws HDF5LibraryException,
NullPointerException;
NullPointerException;
/**
* H5Aexists_by_name determines whether the attribute attr_name exists on an object. That object is specified by its
@@ -915,7 +915,7 @@ public class H5 implements java.io.Serializable {
* - Name is null.
**/
public static long H5Aopen(long obj_id, String attr_name, long aapl_id) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
long id = _H5Aopen(obj_id, attr_name, aapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Aopen add {}", id);
@@ -1043,7 +1043,7 @@ public class H5 implements java.io.Serializable {
* - data buffer is null. See public synchronized static native int H5Aread( )
**/
public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj) throws HDF5Exception,
NullPointerException {
NullPointerException {
HDFArray theArray = new HDFArray(obj);
byte[] buf = theArray.emptyBytes();
@@ -1507,7 +1507,7 @@ public class H5 implements java.io.Serializable {
* - Error from the HDF-5 Library.
**/
public synchronized static native long H5Dget_storage_size(long dataset_id) throws HDF5LibraryException,
IllegalArgumentException;
IllegalArgumentException;
/**
* H5Dget_type returns an identifier for a copy of the datatype for a dataset.
@@ -1732,7 +1732,7 @@ public class H5 implements java.io.Serializable {
status = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf,
isCriticalPinning);
if (status >= 0) {
// convert the data into a Java Array */
// convert the data into a Java Array
obj = theArray.arrayify(buf);
}
@@ -2448,7 +2448,7 @@ public class H5 implements java.io.Serializable {
* - name is null.
**/
public static long H5Fopen(String name, int flags, long access_id) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
long id = _H5Fopen(name, flags, access_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Fopen add {}", id);
@@ -2519,7 +2519,7 @@ public class H5 implements java.io.Serializable {
* - name is null.
**/
public static long H5Fcreate(String name, int flags, long create_id, long access_id) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
long id = _H5Fcreate(name, flags, create_id, access_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Fcreate add {}", id);
@@ -3243,7 +3243,7 @@ public class H5 implements java.io.Serializable {
* - name is null.
*/
public synchronized static long H5Gn_members(long loc_id, String name) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
long grp_id = H5Gopen(loc_id, name, HDF5Constants.H5P_DEFAULT);
long n = -1;
@@ -4006,8 +4006,6 @@ public class H5 implements java.io.Serializable {
public synchronized static native String H5Oget_comment_by_name(long loc_id, String name, long lapl_id)
throws HDF5LibraryException, IllegalArgumentException, NullPointerException;
// long H5Oget_comment_by_name(int loc_id, String name, String comment, long bufsize, int lapl_id);
/**
* H5Oset_comment_by_name sets the comment for the specified object.
*
@@ -4045,7 +4043,7 @@ public class H5 implements java.io.Serializable {
* - name is null.
**/
public synchronized static native H5O_info_t H5Oget_info(long loc_id) throws HDF5LibraryException,
NullPointerException;
NullPointerException;
/**
* H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position.
@@ -4337,6 +4335,20 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Pcreate(long type) throws HDF5LibraryException;
/**
* H5Pget retrieves a copy of the value for a property in a property list (support integer only)
*
* @param plid
* IN: Identifier of property object to query
* @param name
* IN: Name of property to query
* @return value for a property if successful; a negative value if failed
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
*/
public synchronized static native int H5Pget(long plid, String name) throws HDF5LibraryException;
/**
* Sets a property list value (support integer only)
*
@@ -4417,20 +4429,6 @@ public class H5 implements java.io.Serializable {
*/
public synchronized static native long H5Pget_class_parent(long plid) throws HDF5LibraryException;
/**
* H5Pget retrieves a copy of the value for a property in a property list (support integer only)
*
* @param plid
* IN: Identifier of property object to query
* @param name
* IN: Name of property to query
* @return value for a property if successful; a negative value if failed
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
*/
public synchronized static native int H5Pget(long plid, String name) throws HDF5LibraryException;
/**
* H5Pequal determines if two property lists or classes are equal
*
@@ -6106,6 +6104,11 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native long H5Pget_virtual_printf_gap(long dapl_id) throws HDF5LibraryException;
// public synchronized static native void H5Pset_append_flush(long plist_id, int ndims, long[] boundary, H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
// public synchronized static native void H5Pget_append_flush(long plist_id, int dims, long[] boundary, H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
// Dataset xfer property list (DXPL) routines //
/**
@@ -7184,7 +7187,7 @@ public class H5 implements java.io.Serializable {
* - dims or maxdims is null.
**/
public static long H5Screate_simple(int rank, long[] dims, long[] maxdims) throws HDF5Exception,
NullPointerException {
NullPointerException {
long id = _H5Screate_simple(rank, dims, maxdims);
if (id > 0) {
log.trace("OPEN_IDS: H5Screate_simple add {}", id);
@@ -7476,10 +7479,10 @@ public class H5 implements java.io.Serializable {
* - offset array is null.
**/
public synchronized static native int H5Soffset_simple(long space_id, byte[] offset) throws HDF5LibraryException,
NullPointerException;
NullPointerException;
public synchronized static int H5Soffset_simple(long space_id, long[] offset) throws HDF5Exception,
NullPointerException {
NullPointerException {
if (offset == null) {
return -1;
}
@@ -7741,7 +7744,7 @@ public class H5 implements java.io.Serializable {
* - dim is null.
**/
public static long H5Tarray_create(long base_id, int ndims, long[] dim) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
long id = _H5Tarray_create2(base_id, ndims, dim);
if (id > 0) {
log.trace("OPEN_IDS: H5Tarray_create add {}", id);
@@ -7983,7 +7986,7 @@ public class H5 implements java.io.Serializable {
* - buf is null.
**/
public synchronized static native int H5Tencode(long obj_id, byte[] buf, long nalloc) throws HDF5LibraryException,
NullPointerException;
NullPointerException;
// /**
// * H5Tencode converts a data type description into binary form in a buffer.
@@ -8057,12 +8060,12 @@ public class H5 implements java.io.Serializable {
* - name is null.
**/
public static int H5Tenum_insert(long type, String name, int[] value) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
return H5Tenum_insert_int(type, name, value);
}
public static int H5Tenum_insert(long type, String name, int value) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
int[] val = { value };
return H5Tenum_insert_int(type, name, val);
}
@@ -8112,7 +8115,7 @@ public class H5 implements java.io.Serializable {
* - name is null.
**/
public static int H5Tenum_nameof(long type, int[] value, String[] name, int size) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
return H5Tenum_nameof_int(type, value, name, size);
}
@@ -8153,7 +8156,7 @@ public class H5 implements java.io.Serializable {
* - name is null.
**/
public static int H5Tenum_valueof(long type, String name, int[] value) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
return H5Tenum_valueof_int(type, name, value);
}
@@ -8210,7 +8213,7 @@ public class H5 implements java.io.Serializable {
* - dims is null.
**/
public synchronized static native int H5Tget_array_dims2(long type_id, long[] dims) throws HDF5LibraryException,
NullPointerException;
NullPointerException;
/**
* H5Tget_array_ndims returns the rank, the number of dimensions, of an array datatype object.
@@ -8409,7 +8412,7 @@ public class H5 implements java.io.Serializable {
* - fields array is invalid.
**/
public synchronized static native void H5Tget_fields(long type_id, long[] fields) throws HDF5LibraryException,
NullPointerException, IllegalArgumentException;
NullPointerException, IllegalArgumentException;
/**
* H5Tget_fields retrieves information about the locations of the various bit fields of a floating point datatype.
@@ -8437,12 +8440,12 @@ public class H5 implements java.io.Serializable {
* - fields array is invalid.
**/
public static int H5Tget_fields(long type_id, int[] fields) throws HDF5LibraryException, NullPointerException,
IllegalArgumentException {
IllegalArgumentException {
return H5Tget_fields_int(type_id, fields);
}
private synchronized static native int H5Tget_fields_int(long type_id, int[] fields) throws HDF5LibraryException,
NullPointerException, IllegalArgumentException;
NullPointerException, IllegalArgumentException;
/**
* H5Tset_fields sets the locations and sizes of the various floating point bit fields.
@@ -8640,7 +8643,7 @@ public class H5 implements java.io.Serializable {
* - value is null.
**/
public static int H5Tget_member_value(long type_id, int membno, int[] value) throws HDF5LibraryException,
NullPointerException {
NullPointerException {
return H5Tget_member_value_int(type_id, membno, value);
}
@@ -8821,7 +8824,7 @@ public class H5 implements java.io.Serializable {
* - pad is null.
**/
public synchronized static native int H5Tget_pad(long type_id, int[] pad) throws HDF5LibraryException,
NullPointerException;
NullPointerException;
/**
* H5Tset_pad sets the least and most-significant bits padding types.