hdf5 1 12 add missing files and use chkmanifest (#103)

* merge updates from develop

* remove extension on command

* Run autogen before chkmanifest

.github/workflows/main.yml

@@ -106,6 +106,7 @@ jobs:
       if: matrix.generator == 'autogen'
       run: |
         sh ./autogen.sh
+        sh ./bin/chkmanifest
         mkdir "${{ runner.workspace }}/build"
         cd "${{ runner.workspace }}/build"
         $GITHUB_WORKSPACE/configure --enable-shared --${{ matrix.parallel }}-parallel --${{ matrix.cpp }}-cxx --${{ matrix.fortran }}-fortran --enable-java