philipp/hdf5
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

[svn-r30075] Description:

Browse Source 
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk.  Also CMake support for h5format_convert and a bunch of
misc. cleanups.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
This commit is contained in:
Quincey Koziol
2016-06-14 18:07:03 -05:00
parent 7a9e13afdb
commit d3396a7953
55 changed files with 2054 additions and 103 deletions
Download Patch File Download Diff File Expand all files Collapse all files

105
java/src/hdf/hdf5lib/H5.java
View File

@@ -2072,6 +2072,31 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Dwrite_VLStrings(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
/**
* H5Dflush causes all buffers associated with a dataset to be immediately flushed to disk without removing the
* data from the cache.
*
* @param dset_id
* IN: Identifier of the dataset to be flushed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Dflush(long dset_id) throws HDF5LibraryException;
/**
* H5Drefresh causes all buffers associated with a dataset to be cleared and immediately re-loaded with updated
* contents from disk. This function essentially closes the dataset, evicts all metadata associated with it
* from the cache, and then re-opens the dataset. The reopened dataset is automatically re-registered with the same ID.
*
* @param dset_id
* IN: Identifier of the dataset to be refreshed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Drefresh(long dset_id) throws HDF5LibraryException;
// /////// unimplemented ////////
// H5_DLL herr_t H5Ddebug(hid_t dset_id);
// herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id,
@@ -3289,6 +3314,32 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Gopen2(long loc_id, String name, long gapl_id)
throws HDF5LibraryException, NullPointerException;
/**
* H5Gflush causes all buffers associated with a group to be immediately flushed to disk without
* removing the data from the cache.
*
* @param group_id
* IN: Identifier of the group to be flushed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Gflush(long group_id) throws HDF5LibraryException;
/**
* H5Grefresh causes all buffers associated with a group to be cleared and immediately re-loaded
* with updated contents from disk. This function essentially closes the group, evicts all metadata
* associated with it from the cache, and then re-opens the group. The reopened group is automatically
* re-registered with the same ID.
*
* @param group_id
* IN: Identifier of the group to be refreshed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Grefresh(long group_id) throws HDF5LibraryException;
// ////////////////////////////////////////////////////////////
// //
// H5I: HDF5 1.8 Identifier Interface API Functions //
@@ -4290,6 +4341,34 @@ public class H5 implements java.io.Serializable {
public synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name,
int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
/**
* H5Oflush causes all buffers associated with an object to be immediately flushed to disk without removing
* the data from the cache. object_id can be any named object associated with an HDF5 file including a
* dataset, a group, or a committed datatype.
*
* @param object_id
* IN: Identifier of the object to be flushed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Oflush(long object_id) throws HDF5LibraryException;
/**
* H5Orefresh causes all buffers associated with an object to be cleared and immediately re-loaded with
* updated contents from disk. This function essentially closes the object, evicts all metadata associated
* with it from the cache, and then re-opens the object. The reopened object is automatically re-registered
* with the same ID. object_id can be any named object associated with an HDF5 file including a
* dataset, a group, or a committed datatype.
*
* @param object_id
* IN: Identifier of the object to be refreshed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException;
// /////// unimplemented ////////
// ////////////////////////////////////////////////////////////
@@ -9155,6 +9234,32 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Tvlen_create(long base_id) throws HDF5LibraryException;
/**
* H5Tflush causes all buffers associated with a committed datatype to be immediately flushed to disk
* without removing the data from the cache.
*
* @param dtype_id
* IN: Identifier of the committed datatype to be flushed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Tflush(long dtype_id) throws HDF5LibraryException;
/**
* H5Trefresh causes all buffers associated with a committed datatype to be cleared and immediately
* re-loaded with updated contents from disk. This function essentially closes the datatype, evicts
* all metadata associated with it from the cache, and then re-opens the datatype. The reopened datatype
* is automatically re-registered with the same ID.
*
* @param dtype_id
* IN: Identifier of the committed datatype to be refreshed.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
public synchronized static native void H5Trefresh(long dtype_id) throws HDF5LibraryException;
// /////// unimplemented ////////
// H5T_conv_t H5Tfind(int src_id, int dst_id, H5T_cdata_t *pcdata);