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Primary change is HDFFV-11212 - new refs and JNI (#372)

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* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
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22
java/test/TestH5T.java
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@@ -33,8 +33,8 @@ import org.junit.rules.TestName;
public class TestH5T {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testT.h5";
long H5fid = -1;
long H5strdid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = null;
@@ -129,7 +129,7 @@ public class TestH5T {
@Test
public void testH5Tarray_create() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long[] adims = { 3, 5 };
try {
@@ -148,7 +148,7 @@ public class TestH5T {
@Test
public void testH5Tget_array_ndims() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
@@ -176,7 +176,7 @@ public class TestH5T {
@Test
public void testH5Tget_array_dims() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
long[] rdims = new long[2];
@@ -207,7 +207,7 @@ public class TestH5T {
@Test
public void testH5Tenum_functions() {
long filetype_id =-1;
long filetype_id =HDF5Constants.H5I_INVALID_HID;
String enum_type ="Enum_type";
byte[] enum_val = new byte[1];
String enum_name = null;
@@ -275,7 +275,7 @@ public class TestH5T {
@Test
public void testH5Tenum_create_functions() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
byte[] enum_val = new byte[1];
// Create a enumerate datatype
@@ -315,7 +315,7 @@ public class TestH5T {
@Test
public void testH5Topaque_functions() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String opaque_name = null;
// Create a opaque datatype
@@ -345,7 +345,7 @@ public class TestH5T {
@Test
public void testH5Tvlen_create() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
@@ -368,7 +368,7 @@ public class TestH5T {
@Test
public void testH5Tis_variable_str() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
@@ -399,7 +399,7 @@ public class TestH5T {
@Test
public void testH5Tcompound_functions() {
long filetype_id =-1;
long filetype_id =HDF5Constants.H5I_INVALID_HID;
// Create a compound datatype
try {