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Primary change is HDFFV-11212 - new refs and JNI (#372)

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* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
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26
java/test/TestH5Pvirtual.java
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@@ -52,13 +52,13 @@ public class TestH5Pvirtual {
private static final int fill_value = -1;
long[] H5dims = { DIM_Y };
long[] VDSH5dims = { VDSDIM_X, VDSDIM_Y };
long H5fid = -1;
long H5dsid = -1;
long H5dssid = -1;
long H5dvsid = -1;
long H5did = -1;
long H5dcplid = -1;
long H5dapl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5dssid = HDF5Constants.H5I_INVALID_HID;
long H5dvsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5dcplid = HDF5Constants.H5I_INVALID_HID;
long H5dapl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -69,8 +69,8 @@ public class TestH5Pvirtual {
}
private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) {
long did = -1;
long space_id = -1;
long did = HDF5Constants.H5I_INVALID_HID;
long space_id = HDF5Constants.H5I_INVALID_HID;
long[] start = {0, 0};
long[] stride = null;
long[] count = {1, 1};
@@ -100,9 +100,9 @@ public class TestH5Pvirtual {
int[] dset_data = new int[DIM_Y];
// Create source files and datasets
for (int i=0; i < 3; i++) {
long space_id = -1;
long dset_id = -1;
long file_id = -1;
long space_id = HDF5Constants.H5I_INVALID_HID;
long dset_id = HDF5Constants.H5I_INVALID_HID;
long file_id = HDF5Constants.H5I_INVALID_HID;
for (int j = 0; j < DIM_Y; j++) dset_data[j] = i+1;
try {
@@ -265,7 +265,7 @@ public class TestH5Pvirtual {
@Test
public void testH5Pget_selection_source_dataset() throws Throwable {
long src_space = -1;
long src_space = HDF5Constants.H5I_INVALID_HID;
long src_selection = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);