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Primary change is HDFFV-11212 - new refs and JNI (#372)

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* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
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32
java/test/TestH5Plist.java
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@@ -85,7 +85,7 @@ public class TestH5Plist {
PROP3_NAME,
PROP4_NAME};
long plist_class_id = -1;
long plist_class_id = HDF5Constants.H5I_INVALID_HID;
@Before
public void createPropClass()throws NullPointerException, HDF5Exception
@@ -114,9 +114,9 @@ public class TestH5Plist {
@Test
public void testH5P_genprop_basic_class() {
int status = -1;
long cid1 = -1; // Generic Property class ID
long cid2 = -1; // Generic Property class ID
long cid3 = -1; // Generic Property class ID
long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
long cid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
String name = null; // Name of class
try {
@@ -162,7 +162,7 @@ public class TestH5Plist {
// Close parent class
try {
H5.H5Pclose_class(cid2);
cid2 = -1;
cid2 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -172,7 +172,7 @@ public class TestH5Plist {
// Close class
try {
H5.H5Pclose_class(plist_class_id);
plist_class_id = -1;
plist_class_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -242,7 +242,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid3);
cid3 = -1;
cid3 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -252,7 +252,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid2);
cid2 = -1;
cid2 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -262,7 +262,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid1);
cid1 = -1;
cid1 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -634,7 +634,7 @@ public class TestH5Plist {
@Test
public void testH5P_genprop_basic_list_prop() {
boolean status = false;
long lid1 = -1; // Generic Property list ID
long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
long nprops = -1; // Number of properties in class
try {
@@ -760,7 +760,7 @@ public class TestH5Plist {
// @Test
// public void testH5P_genprop_class_callback() {
// class cdata {
// public long cls_id = -1;
// public long cls_id = HDF5Constants.H5I_INVALID_HID;
// public int cls_count = -1;
// cdata(long id, int count) {
// this.cls_id = id;
@@ -813,11 +813,11 @@ public class TestH5Plist {
// }
// H5P_cls_close_func_cb cls_close_cb = new H5P_cls_close_callback();
//
// long cid1 = -1; // Generic Property class ID
// long cid2 = -1; // Generic Property class ID
// long lid1 = -1; // Generic Property list ID
// long lid2 = -1; // Generic Property list ID
// long lid3 = -1; // Generic Property list ID
// long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
// long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
// long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long lid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long lid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long nprops = -1; // Number of properties in class
//
// try {