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Primary change is HDFFV-11212 - new refs and JNI (#372)

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* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
Download Patch File Download Diff File Expand all files Collapse all files

28
java/test/TestH5Pfapl.java
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@@ -47,17 +47,17 @@ public class TestH5Pfapl {
private static final int DIM_Y = 6;
private static final int DIMF_X = 12;
private static final int DIMF_Y = 18;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5Fdsid = -1;
long H5Fdid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5Fdsid = HDF5Constants.H5I_INVALID_HID;
long H5Fdid = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
long[] H5Fdims = { DIMF_X, DIMF_Y };
double windchillF[][] =
{{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
@@ -130,7 +130,7 @@ public class TestH5Pfapl {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
@@ -385,7 +385,7 @@ public class TestH5Pfapl {
@Test
public void testH5Pget_elink_fapl() {
long ret_val_id = -1;
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
assertTrue("H5Pget_elink_fapl", ret_val_id >= 0);
@@ -403,7 +403,7 @@ public class TestH5Pfapl {
@Test
public void testH5P_elink_fapl() {
long ret_val_id = -1;
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
H5.H5Pset_elink_fapl(plapl_id, fapl_id );
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
@@ -421,7 +421,7 @@ public class TestH5Pfapl {
@Test
public void testH5P_elink_file_cache_size() {
long elink_fapl_id = -1;
long elink_fapl_id = HDF5Constants.H5I_INVALID_HID;
int efc_size = 0;
try {
H5.H5Pset_elink_fapl(plapl_id, fapl_id );