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Primary change is HDFFV-11212 - new refs and JNI (#372)

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* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
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34
java/test/TestH5Obasic.java
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@@ -41,7 +41,7 @@ public class TestH5Obasic {
private static final String H5_FILE = "h5ex_g_iterateO1.hdf";
private static H5O_token_t H5la_ds1 = null;
private static H5O_token_t H5la_l1 = null;
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
@Before
public void openH5file()
@@ -69,7 +69,7 @@ public class TestH5Obasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Oopen_not_exists() throws Throwable {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
oid = H5.H5Oopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
@@ -78,7 +78,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_dataset() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
@@ -96,7 +96,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_hardlink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -113,7 +113,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_group() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
@@ -130,7 +130,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_datatype() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
@@ -234,7 +234,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -260,7 +260,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -286,7 +286,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_dataset() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -306,7 +306,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_hardlink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -326,7 +326,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_group() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -346,7 +346,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_datatype() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -464,7 +464,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
@@ -503,7 +503,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
@@ -630,7 +630,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_token() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
@@ -668,7 +668,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
@@ -706,7 +706,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {