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Primary change is HDFFV-11212 - new refs and JNI (#372)

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* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
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22
java/test/TestH5G.java
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@@ -39,11 +39,11 @@ public class TestH5G {
private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12",
"/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" };
private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
long H5fid = -1;
long H5fid2 = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -58,8 +58,8 @@ public class TestH5G {
}
private final long _createGroup2(long fid, String name) {
long gid = -1;
long gcpl = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
long gcpl = HDF5Constants.H5I_INVALID_HID;
try {
gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl
}
@@ -92,12 +92,12 @@ public class TestH5G {
}
private final long _openGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
gid = -1;
gid = HDF5Constants.H5I_INVALID_HID;
err.printStackTrace();
fail("H5.H5Gopen: " + err);
}
@@ -134,7 +134,7 @@ public class TestH5G {
assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid2 > 0);
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
gid = _createGroup(H5fid, GROUPS[i]);
@@ -165,7 +165,7 @@ public class TestH5G {
@Test
public void testH5Gopen() {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {
gid = H5.H5Gopen(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT);
@@ -185,8 +185,8 @@ public class TestH5G {
@Test
public void testH5Gget_create_plist() {
long gid = -1;
long pid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
long pid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {