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Primary change is HDFFV-11212 - new refs and JNI (#372)

Browse Source 
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
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18
java/examples/datatypes/H5Ex_T_Array.java
View File

@@ -34,11 +34,11 @@ public class H5Ex_T_Array {
private static final int NDIMS = 2;
private static void CreateDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
@@ -152,10 +152,10 @@ public class H5Ex_T_Array {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data;

24
java/examples/datatypes/H5Ex_T_ArrayAttribute.java
View File

@@ -35,12 +35,12 @@ public class H5Ex_T_ArrayAttribute {
private static final int NDIMS = 2;
private static void CreateDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
@@ -84,7 +84,7 @@ public class H5Ex_T_ArrayAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -175,11 +175,11 @@ public class H5Ex_T_ArrayAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data;

12
java/examples/datatypes/H5Ex_T_Bit.java
View File

@@ -32,9 +32,9 @@ public class H5Ex_T_Bit {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -116,9 +116,9 @@ public class H5Ex_T_Bit {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

18
java/examples/datatypes/H5Ex_T_BitAttribute.java
View File

@@ -33,10 +33,10 @@ public class H5Ex_T_BitAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -66,7 +66,7 @@ public class H5Ex_T_BitAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -139,10 +139,10 @@ public class H5Ex_T_BitAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

12
java/examples/datatypes/H5Ex_T_Commit.java
View File

@@ -101,9 +101,9 @@ public class H5Ex_T_Commit {
}
private static void CreateDataType() {
long file_id = -1;
long strtype_id = -1;
long filetype_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
Sensor_Datatype datatypes = new Sensor_Datatype();
// Create a new file using default properties.
try {
@@ -183,9 +183,9 @@ public class H5Ex_T_Commit {
}
private static void ReadDataType() {
long file_id = -1;
long typeclass_id = -1;
long filetype_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long typeclass_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
// Open an existing file.
try {

22
java/examples/datatypes/H5Ex_T_Compound.java
View File

@@ -122,12 +122,12 @@ public class H5Ex_T_Compound {
}
private static void CreateDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data = new Sensor[DIM0];
byte[] dset_data = null;
@@ -286,11 +286,11 @@ public class H5Ex_T_Compound {
}
private static void ReadDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data2;
byte[] dset_data;

28
java/examples/datatypes/H5Ex_T_CompoundAttribute.java
View File

@@ -125,13 +125,13 @@ public class H5Ex_T_CompoundAttribute {
}
private static void CreateDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data = new Sensor[DIM0];
byte[] dset_data = null;
@@ -205,7 +205,7 @@ public class H5Ex_T_CompoundAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -310,12 +310,12 @@ public class H5Ex_T_CompoundAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data2;
byte[] dset_data;

12
java/examples/datatypes/H5Ex_T_Float.java
View File

@@ -36,9 +36,9 @@ public class H5Ex_T_Float {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data = new double[DIM0][DIM1];
@@ -120,9 +120,9 @@ public class H5Ex_T_Float {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data;

18
java/examples/datatypes/H5Ex_T_FloatAttribute.java
View File

@@ -37,10 +37,10 @@ public class H5Ex_T_FloatAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data = new double[DIM0][DIM1];
@@ -66,7 +66,7 @@ public class H5Ex_T_FloatAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -139,10 +139,10 @@ public class H5Ex_T_FloatAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data;

12
java/examples/datatypes/H5Ex_T_Integer.java
View File

@@ -34,9 +34,9 @@ public class H5Ex_T_Integer {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -117,9 +117,9 @@ public class H5Ex_T_Integer {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

18
java/examples/datatypes/H5Ex_T_IntegerAttribute.java
View File

@@ -35,10 +35,10 @@ public class H5Ex_T_IntegerAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -64,7 +64,7 @@ public class H5Ex_T_IntegerAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -137,10 +137,10 @@ public class H5Ex_T_IntegerAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;

24
java/examples/datatypes/H5Ex_T_ObjectReference.java
View File

@@ -65,11 +65,11 @@ public class H5Ex_T_ObjectReference {
}
private static void writeObjRef() {
long file_id = -1;
long dataspace_id = -1;
long filespace_id = -1;
long group_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][8];
@@ -90,9 +90,9 @@ public class H5Ex_T_ObjectReference {
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -106,7 +106,7 @@ public class H5Ex_T_ObjectReference {
HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = -1;
group_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -187,11 +187,11 @@ public class H5Ex_T_ObjectReference {
}
private static void readObjRef() {
long file_id = -1;
long dataset_id = -1;
long dataspace_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
int object_type = -1;
long object_id = -1;
long object_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data;

28
java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java
View File

@@ -67,11 +67,11 @@ public class H5Ex_T_ObjectReferenceAttribute {
}
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long group_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][8];
@@ -92,9 +92,9 @@ public class H5Ex_T_ObjectReferenceAttribute {
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -108,7 +108,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = -1;
group_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -139,7 +139,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -212,12 +212,12 @@ public class H5Ex_T_ObjectReferenceAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
int object_type = -1;
long object_id = -1;
long object_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data;

18
java/examples/datatypes/H5Ex_T_Opaque.java
View File

@@ -32,10 +32,10 @@ public class H5Ex_T_Opaque {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long datatype_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data = new byte[DIM0 * LEN];
byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
@@ -138,11 +138,11 @@ public class H5Ex_T_Opaque {
}
private static void ReadDataset() {
long file_id = -1;
long datatype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long type_len = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long type_len = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data;
String tag_name = null;

22
java/examples/datatypes/H5Ex_T_OpaqueAttribute.java
View File

@@ -33,11 +33,11 @@ public class H5Ex_T_OpaqueAttribute {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long datatype_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data = new byte[DIM0 * LEN];
byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
@@ -65,7 +65,7 @@ public class H5Ex_T_OpaqueAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -158,11 +158,11 @@ public class H5Ex_T_OpaqueAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long datatype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long type_len = -1;
long[] dims = { DIM0 };
byte[] dset_data;

20
java/examples/datatypes/H5Ex_T_String.java
View File

@@ -32,11 +32,11 @@ public class H5Ex_T_String {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][SDIM];
StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
@@ -156,11 +156,11 @@ public class H5Ex_T_String {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long sdim = 0;
long[] dims = { DIM0 };
byte[][] dset_data;

26
java/examples/datatypes/H5Ex_T_StringAttribute.java
View File

@@ -33,12 +33,12 @@ public class H5Ex_T_StringAttribute {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][SDIM];
StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
@@ -80,7 +80,7 @@ public class H5Ex_T_StringAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -179,12 +179,12 @@ public class H5Ex_T_StringAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long sdim = 0;
long[] dims = { DIM0 };
byte[][] dset_data;

14
java/examples/datatypes/H5Ex_T_VLString.java
View File

@@ -26,10 +26,10 @@ public class H5Ex_T_VLString
private static String DATASETNAME = "DS1";
private static void createDataset() {
long file_id = -1;
long type_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long type_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int rank = 1;
String[] str_data = { "Parting", "is such", "sweet", "sorrow." };
long[] dims = { str_data.length };
@@ -93,9 +93,9 @@ public class H5Ex_T_VLString
}
private static void readDataset() {
long file_id = -1;
long type_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long type_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
String[] str_data = { "", "", "", "" };
try {