Added java wrappers and tests
This commit is contained in:
Allen Byrne
@@ -4451,7 +4451,7 @@ public class H5 implements java.io.Serializable {
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// //
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// ////////////////////////////////////////////////////////////
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// Generic property list routines
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// /////// Generic property list routines ///////
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/**
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* H5Pget_class_name retrieves the name of a generic property list class
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@@ -4767,7 +4767,7 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op, H5P_iterate_t op_data) throws HDF5LibraryException;
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// Object creation property list (OCPL) routines
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// /////// Object creation property list (OCPL) routines ///////
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/**
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* H5Pget_attr_phase_change retrieves attribute storage phase change thresholds.
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@@ -5071,7 +5071,7 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Pset_fletcher32(long plist) throws HDF5LibraryException,
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NullPointerException;
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// File creation property list (FCPL) routines
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// /////// File creation property list (FCPL) routines ///////
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/**
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* H5Pget_userblock retrieves the size of a user block in a file creation property list.
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@@ -5480,7 +5480,7 @@ public class H5 implements java.io.Serializable {
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throws HDF5LibraryException, IllegalArgumentException;
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// File access property list (FAPL) routines
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// /////// File access property list (FAPL) routines ///////
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/**
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* H5Pget_alignment retrieves the current settings for alignment properties from a file access property list.
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@@ -5860,6 +5860,37 @@ public class H5 implements java.io.Serializable {
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public synchronized static native void H5Pset_metadata_read_attempts(long plist_id, long attempts)
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throws HDF5LibraryException;
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/**
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* H5Pget_evict_on_close retrieves the file access property list setting that determines whether an HDF5 object
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* will be evicted from the library's metadata cache when it is closed.
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*
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* @param fapl_id
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* IN: File access property list identifier
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*
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* @return indication if the object will be evicted on close.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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*
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**/
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public synchronized static native boolean H5Pget_evict_on_close(long fapl_id)
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throws HDF5LibraryException;
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/**
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* H5Pset_evict_on_close controls the library's behavior of evicting metadata associated with a closed object.
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*
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* @param fapl_id
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* IN: File access property list identifier
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* @param evict_on_close
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* IN: Whether the HDF5 object should be evicted on close.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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*
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**/
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public synchronized static native void H5Pset_evict_on_close(long fapl_id, boolean evict_on_close)
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throws HDF5LibraryException;
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// Dataset creation property list (DCPL) routines //
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/**
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@@ -6066,6 +6097,35 @@ public class H5 implements java.io.Serializable {
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**/
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public synchronized static native String H5Pget_virtual_dsetname(long dcpl_id, long index) throws HDF5LibraryException, IllegalArgumentException;
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/**
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* H5Pget_vds_file_cache_size retrieves the size of the vds link open file cache.
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*
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* @param fapl_id
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* IN: File access property list identifier
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*
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* @return VDS link open file cache size in number of files.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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*
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**/
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public synchronized static native int H5Pget_vds_file_cache_size(long fapl_id) throws HDF5LibraryException;
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/**
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* H5Pset_vds_file_cache_size sets the number of files that can be held open in an vds link open file cache.
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*
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* @param fapl_id
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* IN: File access property list identifier
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* @param efc_size
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* IN: VDS link open file cache size in number of files.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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*
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**/
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public synchronized static native void H5Pset_vds_file_cache_size(long fapl_id, int efc_size)
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throws HDF5LibraryException;
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/**
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* H5Pget_external returns information about an external file.
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*
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@@ -6285,7 +6345,37 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException,
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NullPointerException;
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// Dataset access property list (DAPL) routines //
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// /////// Dataset creation property list (DCPL) routines ///////
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/**
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* H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list.
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*
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* @param dcpl_id
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* IN: Dataset creation property list identifier
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* @param opts
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* IN: Edge chunk option flag. Valid values are:
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* H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS - filters are not applied to partial edge chunks.
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* 0 - Disables option; partial edge chunks will be compressed.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library
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**/
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public synchronized static native void H5Pset_chunk_opts(long dcpl_id, int opts) throws HDF5LibraryException;
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/**
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* H5Pget_chunk_opts retrieves the edge chunk option setting stored in the dataset creation property list .
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*
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* @param dcpl_id
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* IN: Dataset creation property list
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* @return The edge chunk option setting.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library
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**/
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public synchronized static native int H5Pget_chunk_opts(long dcpl_id) throws HDF5LibraryException;
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// /////// Dataset access property list (DAPL) routines ///////
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/**
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* Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes
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@@ -6388,12 +6478,76 @@ public class H5 implements java.io.Serializable {
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**/
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public synchronized static native long H5Pget_virtual_printf_gap(long dapl_id) throws HDF5LibraryException;
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/**
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* H5Pget_virtual_prefix Retrieves prefix applied to virtual file paths.
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*
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* @param dapl_id
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* IN: Link access property list identifier
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*
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* @return the prefix to be applied to virtual file paths.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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*
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**/
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public synchronized static native String H5Pget_virtual_prefix(long dapl_id)
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throws HDF5LibraryException;
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/**
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* H5Pset_virtual_prefix Sets prefix to be applied to virtual file paths.
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*
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* @param dapl_id
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* IN: Dataset access property list identifier
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* @param prefix
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* IN: Prefix to be applied to virtual file paths
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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* @exception NullPointerException
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* - prefix is null.
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*
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**/
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public synchronized static native void H5Pset_virtual_prefix(long dapl_id, String prefix)
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throws HDF5LibraryException, NullPointerException;
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/**
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* H5Pget_efile_prefix Retrieves prefix applied to external file paths.
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*
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* @param dapl_id
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* IN: Link access property list identifier
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*
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* @return the prefix to be applied to external file paths.
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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*
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**/
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public synchronized static native String H5Pget_efile_prefix(long dapl_id)
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throws HDF5LibraryException;
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/**
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* H5Pset_efile_prefix Sets prefix to be applied to external file paths.
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*
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* @param dapl_id
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* IN: Dataset access property list identifier
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* @param prefix
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* IN: Prefix to be applied to external file paths
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*
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* @exception HDF5LibraryException
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* - Error from the HDF-5 Library.
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* @exception NullPointerException
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* - prefix is null.
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*
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**/
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public synchronized static native void H5Pset_efile_prefix(long dapl_id, String prefix)
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throws HDF5LibraryException, NullPointerException;
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// public synchronized static native void H5Pset_append_flush(long plist_id, int ndims, long[] boundary, H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
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// public synchronized static native void H5Pget_append_flush(long plist_id, int dims, long[] boundary, H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
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// Dataset xfer property list (DXPL) routines //
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// /////// Dataset xfer property list (DXPL) routines ///////
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/**
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* H5Pget_data_transform retrieves the data transform expression previously set in the dataset transfer property
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@@ -6544,7 +6698,7 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Pset_hyper_vector_size(long dxpl_id, long vector_size)
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throws HDF5LibraryException, NullPointerException;
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// Link creation property list (LCPL) routines //
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// /////// Link creation property list (LCPL) routines ///////
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/**
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* H5Pget_create_intermediate_group determines whether property is set to enable creating missing intermediate
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@@ -6579,7 +6733,7 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Pset_create_intermediate_group(long lcpl_id, boolean crt_intermed_group)
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throws HDF5LibraryException;
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// Group creation property list (GCPL) routines //
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// /////// Group creation property list (GCPL) routines ///////
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/**
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* H5Pget_local_heap_size_hint Retrieves the anticipated size of the local heap for original-style groups.
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@@ -6736,14 +6890,14 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Pset_link_creation_order(long gcpl_id, int crt_order_flags)
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throws HDF5LibraryException;
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// String creation property list (STRCPL) routines //
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// /////// String creation property list (STRCPL) routines ///////
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public synchronized static native int H5Pget_char_encoding(long plist_id) throws HDF5LibraryException;
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public synchronized static native void H5Pset_char_encoding(long plist_id, int encoding)
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throws HDF5LibraryException;
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// Link access property list (LAPL) routines //
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// /////// Link access property list (LAPL) routines ///////
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/**
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* H5Pget_nlinks retrieves the maximum number of soft or user-defined link traversals allowed, nlinks, before the
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@@ -6896,7 +7050,7 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Pset_elink_acc_flags(long lapl_id, int flags) throws HDF5LibraryException,
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IllegalArgumentException;
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// Object copy property list (OCPYPL) routines //
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// /////// Object copy property list (OCPYPL) routines ///////
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/**
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* H5Pget_copy_object retrieves the properties to be used when an object is copied.
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@@ -6927,7 +7081,7 @@ public class H5 implements java.io.Serializable {
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public synchronized static native void H5Pset_copy_object(long ocp_plist_id, int copy_options)
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throws HDF5LibraryException;
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// Other/Older property list routines //
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// /////// Other/Older property list routines ///////
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/**
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* H5Pget_version retrieves the version information of various objects for a file creation property list.
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@@ -6955,7 +7109,7 @@ public class H5 implements java.io.Serializable {
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public synchronized static native int H5Pget_version(long plist, int[] version_info) throws HDF5LibraryException,
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NullPointerException, IllegalArgumentException;
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// file drivers property list routines //
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// /////// file drivers property list routines ///////
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public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment, boolean[] backing_store)
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throws HDF5LibraryException, NullPointerException;
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@@ -7102,20 +7256,28 @@ public class H5 implements java.io.Serializable {
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// File creation property list (FCPL) routines //
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// File access property list (FAPL) routines //
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// herr_t H5Pset_driver( hid_t plist_id, hid_t new_driver_id, const void *new_driver_info )
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// const void *H5Pget_driver_info( hid_t plist_id )
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// herr_t H5Pget_multi_type ( hid_t fapl_id, H5FD_mem_t *type )
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// herr_t H5Pset_multi_type ( hid_t fapl_id, H5FD_mem_t type )
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// herr_t H5Pset_driver(hid_t plist_id, hid_t new_driver_id, const void *new_driver_info)
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// const void *H5Pget_driver_info(hid_t plist_id)
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// herr_t H5Pget_multi_type(hid_t fapl_id, H5FD_mem_t *type)
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// herr_t H5Pset_multi_type(hid_t fapl_id, H5FD_mem_t type)
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// herr_t H5Pget_file_image(hid_t fapl_id, void **buf_ptr_ptr, size_t *buf_len_ptr);
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// herr_t H5Pset_file_image(hid_t fapl_id, void *buf_ptr, size_t buf_len);
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// herr_t H5Pget_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr);
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// herr_t H5Pset_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr);
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// herr_t H5Pset_core_write_tracking(hid_t fapl_id, hbool_t is_enabled, size_t page_size);
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// herr_t H5Pget_core_write_tracking(hid_t fapl_id, hbool_t *is_enabled, size_t *page_size);
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// herr_t H5Pset_all_coll_metadata_ops(hid_t accpl_id, hbool_t is_collective);
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// herr_t H5Pset_coll_metadata_write(hid_t fapl_id, hbool_t is_collective);
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// herr_t H5Pget_coll_metadata_write(hid_t fapl_id, hbool_t *is_collective);
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// herr_t H5Pget_page_buffer_size(hid_t fapl_id, size_t *buf_size, unsigned *min_meta_perc, unsigned *min_raw_perc);
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// herr_t H5Pset_object_flush_cb (hid_t fapl_id, H5F_flush_cb_t func, void *user_data);
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// herr_t H5Pget_object_flush_cb (hid_t fapl_id, H5F_flush_cb_t *func, void **user_data);
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// Dataset creation property list (DCPL) routines //
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// Dataset access property list (DAPL) routines //
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// herr_t H5Pset_append_flush (hid_t dapl_id, int ndims, const hsize_t boundary[], H5D_append_cb_t func, void *user_data);
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// herr_t H5Pget_append_flush(hid_t dapl_id, int ndims, hsize_t boundary[], H5D_append_cb_t *func, void **user_data)
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// Dataset xfer property list (DXPL) routines //
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// herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg);
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