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Add java to format source (#1690)

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This commit is contained in:
Allen Byrne
2022-04-25 20:32:50 -05:00
committed by GitHub
parent d19d9b4c8a
commit 41a36efde1
155 changed files with 12051 additions and 9135 deletions
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411
java/test/TestH5T.java
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@@ -30,30 +30,38 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5T {
@Rule public TestName testname = new TestName();
@Rule
public TestName testname = new TestName();
private static final String H5_FILE = "testT.h5";
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
private final void _deleteFile(String filename)
{
File file = null;
try {
file = new File(filename);
}
catch (Throwable err) {}
catch (Throwable err) {
}
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
try {
file.delete();
}
catch (SecurityException e) {
}
}
}
@Before
public void createH5file() throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
public void createH5file() throws NullPointerException, HDF5Exception
{
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
assertTrue("H5.H5Fcreate", H5fid > 0);
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("H5.H5Tcopy", H5strdid > 0);
@@ -62,28 +70,39 @@ public class TestH5T {
}
@After
public void deleteH5file() throws HDF5LibraryException {
public void deleteH5file() throws HDF5LibraryException
{
if (H5strdid >= 0)
try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
try {
H5.H5Tclose(H5strdid);
}
catch (Exception ex) {
}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
try {
H5.H5Fclose(H5fid);
}
catch (Exception ex) {
}
_deleteFile(H5_FILE);
System.out.println();
}
@Test(expected = HDF5LibraryException.class)
public void testH5Tequal_type_error() throws Throwable {
public void testH5Tequal_type_error() throws Throwable
{
H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid);
}
@Test
public void testH5Tget_class() {
public void testH5Tget_class()
{
try {
int result = H5.H5Tget_class(H5strdid);
assertTrue("H5.H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING")==0);
assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -92,7 +111,8 @@ public class TestH5T {
}
@Test
public void testH5Tget_size() {
public void testH5Tget_size()
{
long dt_size = -1;
try {
@@ -106,7 +126,8 @@ public class TestH5T {
}
@Test
public void testH5Tset_size() {
public void testH5Tset_size()
{
long dt_size = 5;
try {
@@ -127,89 +148,105 @@ public class TestH5T {
}
@Test
public void testH5Tarray_create() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long[] adims = { 3, 5 };
public void testH5Tarray_create()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long[] adims = {3, 5};
try {
filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
assertTrue("testH5Tarray_create", filetype_id >= 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tarray_create.H5Tarray_create " + err);
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
}
try {
filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
assertTrue("testH5Tarray_create", filetype_id >= 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tarray_create.H5Tarray_create " + err);
}
finally {
if (filetype_id >= 0)
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Tget_array_ndims() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
public void testH5Tget_array_ndims()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = {3, 5};
try {
filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tarray_create.H5Tarray_create " + err);
}
assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
try {
ndims = H5.H5Tget_array_ndims(filetype_id);
assertTrue("testH5Tget_array_ndims", ndims == 2);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
}
try {
filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tarray_create.H5Tarray_create " + err);
}
assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
try {
ndims = H5.H5Tget_array_ndims(filetype_id);
assertTrue("testH5Tget_array_ndims", ndims == 2);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
}
finally {
if (filetype_id >= 0)
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Tget_array_dims() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
long[] rdims = new long[2];
public void testH5Tget_array_dims()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = {3, 5};
long[] rdims = new long[2];
try {
filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tarray_create.H5Tarray_create " + err);
}
assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
try {
ndims = H5.H5Tget_array_dims(filetype_id, rdims);
assertTrue("testH5Tget_array_dims", ndims == 2);
assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
}
try {
filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tarray_create.H5Tarray_create " + err);
}
assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
try {
ndims = H5.H5Tget_array_dims(filetype_id, rdims);
assertTrue("testH5Tget_array_dims", ndims == 2);
assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
}
finally {
if (filetype_id >= 0)
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Tenum_functions() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String enum_type ="Enum_type";
byte[] enum_val = new byte[1];
String enum_name = null;
public void testH5Tenum_functions()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String enum_type = "Enum_type";
byte[] enum_val = new byte[1];
String enum_name = null;
// Create a enumerate datatype
try {
@@ -221,15 +258,15 @@ public class TestH5T {
}
assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
try {
enum_val[0]=10;
enum_val[0] = 10;
H5.H5Tenum_insert(filetype_id, "RED", enum_val);
enum_val[0]=11;
enum_val[0] = 11;
H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
enum_val[0]=12;
enum_val[0] = 12;
H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
enum_val[0]=13;
enum_val[0] = 13;
H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
enum_val[0]=14;
enum_val[0] = 14;
H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
// Query member number and member index by member name, for enumeration type.
@@ -237,7 +274,8 @@ public class TestH5T {
assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
// Commit enumeration datatype and close it */
H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
H5.H5Tclose(filetype_id);
@@ -250,17 +288,17 @@ public class TestH5T {
assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
// Query member value by member name, for enumeration type
H5.H5Tenum_valueof (filetype_id, "ORANGE", enum_val);
assertTrue("Incorrect value for enum member", enum_val[0]==13);
H5.H5Tenum_valueof(filetype_id, "ORANGE", enum_val);
assertTrue("Incorrect value for enum member", enum_val[0] == 13);
// Query member value by member index, for enumeration type
H5.H5Tget_member_value (filetype_id, 2, enum_val);
assertTrue("Incorrect value for enum member", enum_val[0]==12);
H5.H5Tget_member_value(filetype_id, 2, enum_val);
assertTrue("Incorrect value for enum member", enum_val[0] == 12);
// Query member name by member value, for enumeration type
enum_val[0] = 14;
enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW")==0);
enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -268,14 +306,19 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Tenum_create_functions() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
byte[] enum_val = new byte[1];
public void testH5Tenum_create_functions()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
byte[] enum_val = new byte[1];
// Create a enumerate datatype
try {
@@ -287,15 +330,15 @@ public class TestH5T {
}
assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0);
try {
enum_val[0]=10;
enum_val[0] = 10;
H5.H5Tenum_insert(filetype_id, "RED", enum_val);
enum_val[0]=11;
enum_val[0] = 11;
H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
enum_val[0]=12;
enum_val[0] = 12;
H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
enum_val[0]=13;
enum_val[0] = 13;
H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
enum_val[0]=14;
enum_val[0] = 14;
H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
// Query member number and member index by member name, for enumeration type.
@@ -308,14 +351,19 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Topaque_functions() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String opaque_name = null;
public void testH5Topaque_functions()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String opaque_name = null;
// Create a opaque datatype
try {
@@ -330,7 +378,7 @@ public class TestH5T {
try {
H5.H5Tset_tag(filetype_id, "opaque type");
opaque_name = H5.H5Tget_tag(filetype_id);
assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type")==0);
assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -338,67 +386,83 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Tvlen_create() {
public void testH5Tvlen_create()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
assertTrue("testH5Tvlen_create", filetype_id >= 0);
try {
filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
assertTrue("testH5Tvlen_create", filetype_id >= 0);
// Check if datatype is VL type
int vlclass = H5.H5Tget_class(filetype_id);
assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tvlen_create.H5Tvlen_create " + err);
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
}
// Check if datatype is VL type
int vlclass = H5.H5Tget_class(filetype_id);
assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tvlen_create.H5Tvlen_create " + err);
}
finally {
if (filetype_id >= 0)
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Tis_variable_str() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
public void testH5Tis_variable_str()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
try {
filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
// Convert to variable-length string
H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
// Convert to variable-length string
H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
// Check if datatype is VL string
int vlclass = H5.H5Tget_class(filetype_id);
assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
// Check if datatype is VL string
int vlclass = H5.H5Tget_class(filetype_id);
assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
// Verify that the class detects as a string
assertTrue("testH5Tis_variable_str:H5Tdetect_class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tis_variable_str " + err);
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
}
// Verify that the class detects as a string
assertTrue("testH5Tis_variable_str:H5Tdetect_class",
H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Tis_variable_str " + err);
}
finally {
if (filetype_id >= 0)
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Tcompound_functions() {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
public void testH5Tcompound_functions()
{
long filetype_id = HDF5Constants.H5I_INVALID_HID;
// Create a compound datatype
try {
@@ -420,28 +484,34 @@ public class TestH5T {
// We started to support this function for compound type in 1.8.6 release.
int order = H5.H5Tget_order(filetype_id);
assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR);
assertTrue("Wrong order for this type.", (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
assertTrue("Wrong order for this type.",
(order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
// Make certain that the correct classes can be detected
assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
assertTrue("Can't get correct class",
H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT));
// Make certain that an incorrect class is not detected
assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME));
// Query member name by member index
String index_name = H5.H5Tget_member_name (filetype_id, 0);
assertTrue("Incorrect name for member index", index_name.compareTo("Lon")==0);
String index_name = H5.H5Tget_member_name(filetype_id, 0);
assertTrue("Incorrect name for member index", index_name.compareTo("Lon") == 0);
// Query member offset by member no
long index_offset = H5.H5Tget_member_offset (filetype_id, 1);
long index_offset = H5.H5Tget_member_offset(filetype_id, 1);
assertTrue("Incorrect offset for member no", index_offset == 8);
// Query member type by member index
long index_type = H5.H5Tget_member_type (filetype_id, 0);
assertTrue("Incorrect type for member index", H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
long index_type = H5.H5Tget_member_type(filetype_id, 0);
assertTrue("Incorrect type for member index",
H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
if (index_type >= 0)
try {H5.H5Tclose(index_type);} catch (Exception ex) {}
try {
H5.H5Tclose(index_type);
}
catch (Exception ex) {
}
}
catch (Throwable err) {
err.printStackTrace();
@@ -449,8 +519,11 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
try {
H5.H5Tclose(filetype_id);
}
catch (Exception ex) {
}
}
}
}