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Add java to format source (#1690)

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This commit is contained in:
Allen Byrne
2022-04-25 20:32:50 -05:00
committed by GitHub
parent d19d9b4c8a
commit 41a36efde1
155 changed files with 12051 additions and 9135 deletions
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313
java/test/TestH5S.java
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@@ -12,10 +12,10 @@
package test;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
@@ -28,16 +28,17 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5S {
@Rule public TestName testname = new TestName();
long H5sid = HDF5Constants.H5I_INVALID_HID;
int H5rank = 2;
long H5dims[] = {5, 5};
long H5maxdims[] = {10, 10};
@Rule
public TestName testname = new TestName();
long H5sid = HDF5Constants.H5I_INVALID_HID;
int H5rank = 2;
long H5dims[] = {5, 5};
long H5maxdims[] = {10, 10};
@Before
public void createH5file()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
public void createH5file() throws NullPointerException, HDF5Exception
{
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
H5sid = H5.H5Screate_simple(H5rank, H5dims, H5maxdims);
@@ -45,15 +46,21 @@ public class TestH5S {
}
@After
public void deleteH5file() throws HDF5LibraryException {
public void deleteH5file() throws HDF5LibraryException
{
if (H5sid > 0) {
try {H5.H5Sclose(H5sid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5sid);
}
catch (Exception ex) {
}
}
System.out.println();
}
@Test
public void testH5Sget_simple_extent_ndims() {
public void testH5Sget_simple_extent_ndims()
{
int read_rank = -1;
try {
read_rank = H5.H5Sget_simple_extent_ndims(H5sid);
@@ -66,7 +73,8 @@ public class TestH5S {
}
@Test
public void testH5Sget_simple_extent_dims_null() {
public void testH5Sget_simple_extent_dims_null()
{
int read_rank = -1;
try {
@@ -80,9 +88,10 @@ public class TestH5S {
}
@Test
public void testH5Sget_simple_extent_dims() {
int read_rank = -1;
long dims[] = {5, 5};
public void testH5Sget_simple_extent_dims()
{
int read_rank = -1;
long dims[] = {5, 5};
long maxdims[] = {10, 10};
try {
@@ -98,11 +107,12 @@ public class TestH5S {
}
@Test
public void testH5Sget_simple_extent_npoints() {
public void testH5Sget_simple_extent_npoints()
{
long num_elements = -1;
try {
num_elements = H5.H5Sget_simple_extent_npoints(H5sid);
assertTrue("H5.H5Sget_simple_extent_npoints", (H5dims[0]*H5dims[1]) == num_elements);
assertTrue("H5.H5Sget_simple_extent_npoints", (H5dims[0] * H5dims[1]) == num_elements);
}
catch (Throwable err) {
err.printStackTrace();
@@ -111,7 +121,8 @@ public class TestH5S {
}
@Test
public void testH5Sget_simple_extent_type() {
public void testH5Sget_simple_extent_type()
{
int read_type = -1;
try {
read_type = H5.H5Sget_simple_extent_type(H5sid);
@@ -124,7 +135,8 @@ public class TestH5S {
}
@Test
public void testH5Sis_simple() {
public void testH5Sis_simple()
{
boolean result = false;
try {
@@ -138,12 +150,13 @@ public class TestH5S {
}
@Test
public void testH5Sset_extent_simple() {
public void testH5Sset_extent_simple()
{
long num_elements = -1;
try {
H5.H5Sset_extent_simple(H5sid, H5rank, H5maxdims, H5maxdims);
num_elements = H5.H5Sget_simple_extent_npoints(H5sid);
assertTrue("H5.H5Sget_simple_extent_npoints", (H5maxdims[0]*H5maxdims[1]) == num_elements);
assertTrue("H5.H5Sget_simple_extent_npoints", (H5maxdims[0] * H5maxdims[1]) == num_elements);
}
catch (Throwable err) {
err.printStackTrace();
@@ -152,7 +165,8 @@ public class TestH5S {
}
@Test
public void testH5Sget_select_type() {
public void testH5Sget_select_type()
{
int read_type = -1;
try {
read_type = H5.H5Sget_select_type(H5sid);
@@ -165,12 +179,13 @@ public class TestH5S {
}
@Test
public void testH5Sset_extent_none() {
public void testH5Sset_extent_none()
{
int read_type = -1;
try {
H5.H5Sset_extent_none(H5sid);
read_type = H5.H5Sget_simple_extent_type(H5sid);
assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NULL == read_type);
assertTrue("H5.H5Sget_simple_extent_type: " + read_type, HDF5Constants.H5S_NULL == read_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -179,8 +194,9 @@ public class TestH5S {
}
@Test
public void testH5Scopy() {
long sid = HDF5Constants.H5I_INVALID_HID;
public void testH5Scopy()
{
long sid = HDF5Constants.H5I_INVALID_HID;
int read_rank = -1;
try {
@@ -194,13 +210,18 @@ public class TestH5S {
fail("H5.H5Scopy: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
try {
H5.H5Sclose(sid);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Sextent_copy() {
long sid = HDF5Constants.H5I_INVALID_HID;
public void testH5Sextent_copy()
{
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
@@ -215,18 +236,23 @@ public class TestH5S {
fail("H5.H5Sextent_copy: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
try {
H5.H5Sclose(sid);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Sextent_equal() {
long sid = HDF5Constants.H5I_INVALID_HID;
public void testH5Sextent_equal()
{
long sid = HDF5Constants.H5I_INVALID_HID;
boolean result = false;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
assertTrue("H5.H5Screate_null",sid > 0);
assertTrue("H5.H5Screate_null", sid > 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -235,7 +261,7 @@ public class TestH5S {
try {
result = H5.H5Sextent_equal(sid, H5sid);
assertFalse("H5.testH5Sextent_equal",result);
assertFalse("H5.testH5Sextent_equal", result);
H5.H5Sextent_copy(sid, H5sid);
result = H5.H5Sextent_equal(sid, H5sid);
assertTrue("H5.testH5Sextent_equal", result);
@@ -245,16 +271,21 @@ public class TestH5S {
fail("H5.H5Sextent_copy " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
try {
H5.H5Sclose(sid);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Sencode_decode_null_dataspace() {
long sid = HDF5Constants.H5I_INVALID_HID;
public void testH5Sencode_decode_null_dataspace()
{
long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] null_sbuf = null;
boolean result = false;
boolean result = false;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
@@ -267,21 +298,25 @@ public class TestH5S {
try {
null_sbuf = H5.H5Sencode(sid);
assertFalse("H5.testH5Sencode", null_sbuf==null);
assertFalse("H5.testH5Sencode", null_sbuf == null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sencode " + err);
}
finally {
if(null_sbuf == null) {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
if (null_sbuf == null) {
try {
H5.H5Sclose(sid);
}
catch (Exception ex) {
}
}
}
try {
decoded_sid = H5.H5Sdecode(null_sbuf);
assertTrue("H5.testH5Sdecode", decoded_sid>0);
assertTrue("H5.testH5Sdecode", decoded_sid > 0);
result = H5.H5Sextent_equal(sid, decoded_sid);
assertTrue("H5.testH5Sextent_equal", result);
@@ -291,19 +326,28 @@ public class TestH5S {
fail("H5.H5Sdecode " + err);
}
finally {
try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {}
try {H5.H5Sclose(sid);} catch (Exception ex) {}
try {
H5.H5Sclose(decoded_sid);
}
catch (Exception ex) {
}
try {
H5.H5Sclose(sid);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Sencode_decode_scalar_dataspace() {
long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
public void testH5Sencode_decode_scalar_dataspace()
{
long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] scalar_sbuf = null;
boolean result = false;
int iresult = -1;
long lresult = -1;
boolean result = false;
int iresult = -1;
long lresult = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
@@ -316,52 +360,65 @@ public class TestH5S {
try {
scalar_sbuf = H5.H5Sencode(sid);
assertFalse("H5.testH5Sencode", scalar_sbuf==null);
assertFalse("H5.testH5Sencode", scalar_sbuf == null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sencode " + err);
}
finally {
if(scalar_sbuf == null) {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
if (scalar_sbuf == null) {
try {
H5.H5Sclose(sid);
}
catch (Exception ex) {
}
}
}
try {
decoded_sid = H5.H5Sdecode(scalar_sbuf);
assertTrue("H5.testH5Sdecode", decoded_sid>0);
assertTrue("H5.testH5Sdecode", decoded_sid > 0);
result = H5.H5Sextent_equal(sid, decoded_sid);
assertTrue("H5.testH5Sextent_equal", result);
/* Verify decoded dataspace */
lresult = H5.H5Sget_simple_extent_npoints(decoded_sid);
assertTrue("H5.testH5Sget_simple_extent_npoints", lresult==1);
assertTrue("H5.testH5Sget_simple_extent_npoints", lresult == 1);
iresult = H5.H5Sget_simple_extent_ndims(decoded_sid);
assertTrue("H5.testH5Sget_simple_extent_ndims", iresult==0);
assertTrue("H5.testH5Sget_simple_extent_ndims", iresult == 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sdecode " + err);
}
finally {
try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {}
try {H5.H5Sclose(sid);} catch (Exception ex) {}
try {
H5.H5Sclose(decoded_sid);
}
catch (Exception ex) {
}
try {
H5.H5Sclose(sid);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Sselect_none() {
public void testH5Sselect_none()
{
int read_type = -1;
try {
H5.H5Sselect_none(H5sid);
read_type = H5.H5Sget_select_type(H5sid);
assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_NONE == read_type);
assertTrue("H5.H5Sget_select_type: " + read_type, HDF5Constants.H5S_SEL_NONE == read_type);
H5.H5Sselect_all(H5sid);
read_type = H5.H5Sget_select_type(H5sid);
assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_ALL == read_type);
assertTrue("H5.H5Sget_select_type: " + read_type, HDF5Constants.H5S_SEL_ALL == read_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -370,13 +427,14 @@ public class TestH5S {
}
@Test
public void testH5Sget_select_npoints() {
long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */
public void testH5Sget_select_npoints()
{
long coord[][] = {{0, 1}, {2, 4}, {5, 6}}; /* Coordinates for point selection */
long num_elements = -1;
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
num_elements = H5.H5Sget_select_npoints(H5sid);
assertTrue("H5.H5Sget_select_npoints: "+num_elements, 3 == num_elements);
assertTrue("H5.H5Sget_select_npoints: " + num_elements, 3 == num_elements);
}
catch (Throwable err) {
err.printStackTrace();
@@ -385,9 +443,10 @@ public class TestH5S {
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sget_select_elem_pointlist_invalid() throws Throwable {
long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */
long getcoord[] = {-1,-1}; /* Coordinates for get point selection */
public void testH5Sget_select_elem_pointlist_invalid() throws Throwable
{
long coord[][] = {{0, 1}, {2, 4}, {5, 6}}; /* Coordinates for point selection */
long getcoord[] = {-1, -1}; /* Coordinates for get point selection */
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
}
@@ -399,9 +458,10 @@ public class TestH5S {
}
@Test
public void testH5Sget_select_elem_pointlist() {
long coord[][] = {{0,1},{2,3},{4,5}}; /* Coordinates for point selection */
long getcoord[] = {-1,-1,-1,-1,-1,-1}; /* Coordinates for get point selection */
public void testH5Sget_select_elem_pointlist()
{
long coord[][] = {{0, 1}, {2, 3}, {4, 5}}; /* Coordinates for point selection */
long getcoord[] = {-1, -1, -1, -1, -1, -1}; /* Coordinates for get point selection */
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
H5.H5Sget_select_elem_pointlist(H5sid, 0, 3, getcoord);
@@ -419,15 +479,16 @@ public class TestH5S {
}
@Test
public void testH5Sget_select_bounds() {
long lowbounds[] = {-1,-1};
long hibounds[] = {-1,-1};
public void testH5Sget_select_bounds()
{
long lowbounds[] = {-1, -1};
long hibounds[] = {-1, -1};
try {
H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[0]);
assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[1]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 1) == hibounds[0]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 1) == hibounds[1]);
}
catch (Throwable err) {
err.printStackTrace();
@@ -436,30 +497,31 @@ public class TestH5S {
}
@Test
public void testH5Soffset_simple() {
long coord[][] = {{2,2},{2,4},{4,2},{4,4}}; /* Coordinates for point selection */
long lowbounds[] = {-1,-1};
long hibounds[] = {-1,-1};
public void testH5Soffset_simple()
{
long coord[][] = {{2, 2}, {2, 4}, {4, 2}, {4, 4}}; /* Coordinates for point selection */
long lowbounds[] = {-1, -1};
long hibounds[] = {-1, -1};
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 4, coord);
H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[0]);
assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[1]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 1) == hibounds[0]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 1) == hibounds[1]);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sget_select_bounds: " + err);
}
try {
long offset[] = {-1,-1};
long offset[] = {-1, -1};
H5.H5Soffset_simple(H5sid, offset);
H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[0]);
assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[1]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-2) == hibounds[0]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-2) == hibounds[1]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 2) == hibounds[0]);
assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 2) == hibounds[1]);
}
catch (Throwable err) {
err.printStackTrace();
@@ -468,14 +530,15 @@ public class TestH5S {
}
@Test
public void testH5Sget_select_hyper() {
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {0,0};
long stride[] = {1,1};
long count[] = {1,1};
long block[] = {4,4};
long nblocks; // Number of hyperslab blocks
long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
public void testH5Sget_select_hyper()
{
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {0, 0};
long stride[] = {1, 1};
long count[] = {1, 1};
long block[] = {4, 4};
long nblocks; // Number of hyperslab blocks
long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
try {
// Copy "all" selection & space
space1 = H5.H5Scopy(H5sid);
@@ -493,26 +556,31 @@ public class TestH5S {
// Verify that the correct block is defined
assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == blocks[0]);
assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == blocks[1]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == blocks[2]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == blocks[3]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0] - 1) == blocks[2]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1] - 1) == blocks[3]);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sget_select_bounds: " + err);
}
finally {
try {H5.H5Sclose(space1);} catch (Exception ex) {}
try {
H5.H5Sclose(space1);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Sget_select_valid() {
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {1,0};
long stride[] = {1,1};
long count[] = {2,3};
long block[] = {1,1};
long offset[] = {0,0}; // Offset of selection
public void testH5Sget_select_valid()
{
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {1, 0};
long stride[] = {1, 1};
long count[] = {2, 3};
long block[] = {1, 1};
long offset[] = {0, 0}; // Offset of selection
try {
// Copy "all" selection & space
@@ -522,20 +590,20 @@ public class TestH5S {
H5.H5Sselect_hyperslab(space1, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
// Check a valid offset
offset[0]=-1;
offset[1]=0;
offset[0] = -1;
offset[1] = 0;
H5.H5Soffset_simple(space1, offset);
assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1));
// Check an invalid offset
offset[0]=10;
offset[1]=0;
offset[0] = 10;
offset[1] = 0;
H5.H5Soffset_simple(space1, offset);
assertFalse("H5Sselect_valid", H5.H5Sselect_valid(space1));
/* Reset offset */
offset[0]=0;
offset[1]=0;
offset[0] = 0;
offset[1] = 0;
H5.H5Soffset_simple(space1, offset);
assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1));
}
@@ -544,20 +612,25 @@ public class TestH5S {
fail("testH5Sget_select_valid: " + err);
}
finally {
try {H5.H5Sclose(space1);} catch (Exception ex) {}
try {
H5.H5Sclose(space1);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Shyper_regular() {
long start[] = {1,0};
long stride[] = {1,1};
long count[] = {2,3};
long block[] = {1,1};
long q_start[] = new long[2];
long q_stride[] = new long[2];
long q_count[] = new long[2];
long q_block[] = new long[2];
public void testH5Shyper_regular()
{
long start[] = {1, 0};
long stride[] = {1, 1};
long count[] = {2, 3};
long block[] = {1, 1};
long q_start[] = new long[2];
long q_stride[] = new long[2];
long q_count[] = new long[2];
long q_block[] = new long[2];
boolean is_regular = false;
try {
@@ -572,7 +645,7 @@ public class TestH5S {
H5.H5Sget_regular_hyperslab(H5sid, q_start, q_stride, q_count, q_block);
/* Verify the hyperslab parameters */
for(int u = 0; u < H5rank; u++) {
for (int u = 0; u < H5rank; u++) {
assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]);
assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]);
assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]);