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Add java to format source (#1690)

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This commit is contained in:
Allen Byrne
2022-04-25 20:32:50 -05:00
committed by GitHub
parent d19d9b4c8a
commit 41a36efde1
155 changed files with 12051 additions and 9135 deletions
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246
java/test/TestH5R.java
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@@ -23,8 +23,8 @@ import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
@@ -34,38 +34,46 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5R {
@Rule public TestName testname = new TestName();
@Rule
public TestName testname = new TestName();
private static final String H5_FILE = "testH5R.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
int FILLVAL = 99;
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
int FILLVAL = 99;
private final void _deleteFile(String filename) {
private final void _deleteFile(String filename)
{
File file = null;
try {
file = new File(filename);
}
catch (Throwable err) {}
catch (Throwable err) {
}
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {e.printStackTrace();}
try {
file.delete();
}
catch (SecurityException e) {
e.printStackTrace();
}
}
assertFalse("TestH5R._deleteFile file still exists ", file.exists());
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
private final long _createDataset(long fid, long dsid, String name, long dapl)
{
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -76,34 +84,35 @@ public class TestH5R {
return did;
}
private final long _createGroup(long fid, String name) {
private final long _createGroup(long fid, String name)
{
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
assertTrue("TestH5R._createGroup: ",gid > 0);
assertTrue("TestH5R._createGroup: ", gid > 0);
return gid;
}
@Before
public void createH5file()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
public void createH5file() throws NullPointerException, HDF5Exception
{
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5gid = _createGroup(H5fid, "Group1");
H5gid = _createGroup(H5fid, "Group1");
H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT);
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
// Initialize the dataset.
for (int indx = 0; indx < DIM_X; indx++)
@@ -112,50 +121,70 @@ public class TestH5R {
try {
if (H5did >= 0)
H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data[0]);
H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]);
}
catch (Exception e) {
e.printStackTrace();
}
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R.createH5file: " + err);
}
assertTrue("TestH5R.createH5file: H5.H5Fcreate: ",H5fid > 0);
assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
assertTrue("TestH5R.createH5file: _createDataset: ",H5did > 0);
assertTrue("TestH5R.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
assertTrue("TestH5R.createH5file: _createDataset: ", H5did > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
public void deleteH5file() throws HDF5LibraryException {
public void deleteH5file() throws HDF5LibraryException
{
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dsid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
try {
H5.H5Fclose(H5fid);
}
catch (Exception ex) {
}
if (H5gid > 0)
try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
try {
H5.H5Gclose(H5gid);
}
catch (Exception ex) {
}
if (H5did2 > 0)
try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did2);
}
catch (Exception ex) {
}
_deleteFile(H5_FILE);
System.out.println();
}
@Test
public void testH5Rget_name() {
long loc_id = H5fid;
int ref_type = HDF5Constants.H5R_OBJECT;
long ret_val = -1;
byte[] ref = null;
String[] name = {""};
public void testH5Rget_name()
{
long loc_id = H5fid;
int ref_type = HDF5Constants.H5R_OBJECT;
long ret_val = -1;
byte[] ref = null;
String[] name = {""};
String objName = "/dset";
try {
@@ -174,21 +203,23 @@ public class TestH5R {
fail("H5.H5Rget_name: " + err);
}
assertTrue("testH5Rget_name: H5Rget_name", ret_val>0);
assertTrue("testH5Rget_name: H5Rget_name", ret_val > 0);
assertTrue("The name of the object: ", objName.equals(name[0]));
}
@Test
public void testH5Rget_obj_type2() {
int ref_type = HDF5Constants.H5R_OBJECT;
byte[] ref = null;
public void testH5Rget_obj_type2()
{
int ref_type = HDF5Constants.H5R_OBJECT;
byte[] ref = null;
String objName = "/dset";
int obj_type = -1;;
int obj_type = -1;
;
try {
ref = H5.H5Rcreate(H5fid, objName, ref_type, -1);
}
catch(Throwable err) {
catch (Throwable err) {
err.printStackTrace();
}
@@ -203,7 +234,8 @@ public class TestH5R {
}
@Test
public void testH5Rcreate_refobj() {
public void testH5Rcreate_refobj()
{
byte[] ref = null;
try {
@@ -217,7 +249,8 @@ public class TestH5R {
}
@Test
public void testH5Rcreate_regionrefobj() {
public void testH5Rcreate_regionrefobj()
{
byte[] ref = null;
try {
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
@@ -230,18 +263,20 @@ public class TestH5R {
}
@Test
public void testH5Rdereference() {
byte[] ref1 = null;
byte[] ref2 = null;
public void testH5Rdereference()
{
byte[] ref1 = null;
byte[] ref2 = null;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
try {
//Create reference on dataset
// Create reference on dataset
ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
dataset_id = H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
dataset_id =
H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
//Create reference on group
ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
// Create reference on group
ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
group_id = H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
assertNotNull(ref1);
assertNotNull(ref2);
@@ -253,17 +288,26 @@ public class TestH5R {
fail("TestH5Rdereference " + err);
}
finally {
try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
try {H5.H5Gclose(group_id);} catch (Exception ex) {}
try {
H5.H5Dclose(dataset_id);
}
catch (Exception ex) {
}
try {
H5.H5Gclose(group_id);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Rget_region() {
public void testH5Rget_region()
{
byte[] ref = null;
long dsid = HDF5Constants.H5I_INVALID_HID;
long dsid = HDF5Constants.H5I_INVALID_HID;
try {
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
assertNotNull(ref);
assertTrue(dsid >= 0);
@@ -273,80 +317,94 @@ public class TestH5R {
fail("TestH5Rget_region: " + err);
}
finally {
try {H5.H5Sclose(dsid);} catch (Exception ex) {}
try {
H5.H5Sclose(dsid);
}
catch (Exception ex) {
}
}
}
@Test(expected = IllegalArgumentException.class)
public void testH5Rget_name_Invalidreftype() throws Throwable {
byte[] ref = null;
public void testH5Rget_name_Invalidreftype() throws Throwable
{
byte[] ref = null;
String[] name = {""};
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name, 16);
}
@Test(expected = NullPointerException.class)
public void testH5Rget_name_NULLreference() throws Throwable {
byte[] ref = null;
String[] name= {""};
public void testH5Rget_name_NULLreference() throws Throwable
{
byte[] ref = null;
String[] name = {""};
H5.H5Rget_name(H5fid, HDF5Constants.H5R_OBJECT, ref, name, 16);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Rget_obj_type2_Invalidreftype() throws Throwable {
public void testH5Rget_obj_type2_Invalidreftype() throws Throwable
{
byte[] ref = null;
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Rcreate_InvalidObjectName() throws Throwable {
H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1);
public void testH5Rcreate_InvalidObjectName() throws Throwable
{
H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Rcreate_Invalidspace_id() throws Throwable {
H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1);
public void testH5Rcreate_Invalidspace_id() throws Throwable
{
H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Rcreate_Invalidreftype() throws Throwable {
public void testH5Rcreate_Invalidreftype() throws Throwable
{
H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Rgetregion_Invalidreftype() throws Throwable {
public void testH5Rgetregion_Invalidreftype() throws Throwable
{
byte[] ref = null;
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Rgetregion_Badreferencetype() throws Throwable {
public void testH5Rgetregion_Badreferencetype() throws Throwable
{
byte[] ref = null;
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
H5.H5Rget_region(H5fid, HDF5Constants.H5R_OBJECT, ref);
}
@Test(expected = NullPointerException.class)
public void testH5Rgetregion_Nullreference() throws Throwable {
public void testH5Rgetregion_Nullreference() throws Throwable
{
byte[] ref = null;
H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
}
@Test(expected = NullPointerException.class)
public void testH5Rdereference_Nullreference() throws Throwable {
public void testH5Rdereference_Nullreference() throws Throwable
{
byte[] ref = null;
H5.H5Rdereference(H5did2, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Rdereference_Invalidreference() throws Throwable {
public void testH5Rdereference_Invalidreference() throws Throwable
{
byte[] ref1 = null;
byte[] ref2 = null;
ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1);
}
}