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Add java to format source (#1690)

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This commit is contained in:
Allen Byrne
2022-04-25 20:32:50 -05:00
committed by GitHub
parent d19d9b4c8a
commit 41a36efde1
155 changed files with 12051 additions and 9135 deletions
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360
java/test/TestH5Pvirtual.java
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@@ -32,48 +32,47 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Pvirtual {
@Rule public TestName testname = new TestName();
@Rule
public TestName testname = new TestName();
private static final String H5_FILE = "vds.h5";
private static final String SRC_FILE[] = {
"v-0.h5",
"v-1.h5",
"v-2.h5"
};
private static final String SRC_DATASET[] = {
"A",
"B",
"C"
};
private static final int DIM_Y = 6;
private static final int VDSDIM_X = 4;
private static final int VDSDIM_Y = 6;
private static final int fill_value = -1;
long[] H5dims = { DIM_Y };
long[] VDSH5dims = { VDSDIM_X, VDSDIM_Y };
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5dssid = HDF5Constants.H5I_INVALID_HID;
long H5dvsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5dcplid = HDF5Constants.H5I_INVALID_HID;
long H5dapl_id = HDF5Constants.H5I_INVALID_HID;
private static final String H5_FILE = "vds.h5";
private static final String SRC_FILE[] = {"v-0.h5", "v-1.h5", "v-2.h5"};
private static final String SRC_DATASET[] = {"A", "B", "C"};
private static final int DIM_Y = 6;
private static final int VDSDIM_X = 4;
private static final int VDSDIM_Y = 6;
private static final int fill_value = -1;
long[] H5dims = {DIM_Y};
long[] VDSH5dims = {VDSDIM_X, VDSDIM_Y};
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5dssid = HDF5Constants.H5I_INVALID_HID;
long H5dvsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5dcplid = HDF5Constants.H5I_INVALID_HID;
long H5dapl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
private final void _deleteFile(String filename)
{
File file = new File(filename);
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
try {
file.delete();
}
catch (SecurityException e) {
}
}
}
private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) {
long did = HDF5Constants.H5I_INVALID_HID;
private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl)
{
long did = HDF5Constants.H5I_INVALID_HID;
long space_id = HDF5Constants.H5I_INVALID_HID;
long[] start = {0, 0};
long[] start = {0, 0};
long[] stride = null;
long[] count = {1, 1};
long[] block = {1, VDSDIM_Y};
long[] count = {1, 1};
long[] block = {1, VDSDIM_Y};
try {
H5dssid = H5.H5Screate_simple(1, H5dims, null);
@@ -83,8 +82,8 @@ public class TestH5Pvirtual {
H5.H5Sselect_hyperslab(dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
H5.H5Pset_virtual(dcpl, dsid, SRC_FILE[i], SRC_DATASET[i], H5dssid);
}
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid,
HDF5Constants.H5P_DEFAULT, dcpl, dapl);
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid, HDF5Constants.H5P_DEFAULT, dcpl,
dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -95,23 +94,26 @@ public class TestH5Pvirtual {
return did;
}
private final void _createH5File(long fcpl, long fapl) {
private final void _createH5File(long fcpl, long fapl)
{
int[] dset_data = new int[DIM_Y];
// Create source files and datasets
for (int i=0; i < 3; i++) {
for (int i = 0; i < 3; i++) {
long space_id = HDF5Constants.H5I_INVALID_HID;
long dset_id = HDF5Constants.H5I_INVALID_HID;
long file_id = HDF5Constants.H5I_INVALID_HID;
for (int j = 0; j < DIM_Y; j++) dset_data[j] = i+1;
long dset_id = HDF5Constants.H5I_INVALID_HID;
long file_id = HDF5Constants.H5I_INVALID_HID;
for (int j = 0; j < DIM_Y; j++)
dset_data[j] = i + 1;
try {
file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
space_id = H5.H5Screate_simple(1, H5dims, null);
dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Dwrite (dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT,
dset_data);
dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
H5.H5Dwrite(dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Throwable err) {
err.printStackTrace();
@@ -119,19 +121,32 @@ public class TestH5Pvirtual {
}
finally {
if (dset_id > 0)
try {H5.H5Dclose(dset_id);} catch (Exception ex) {}
try {
H5.H5Dclose(dset_id);
}
catch (Exception ex) {
}
if (space_id > 0)
try {H5.H5Sclose(space_id);} catch (Exception ex) {}
try {
H5.H5Sclose(space_id);
}
catch (Exception ex) {
}
if (file_id > 0)
try {H5.H5Fclose(file_id);} catch (Exception ex) {}
try {
H5.H5Fclose(file_id);
}
catch (Exception ex) {
}
}
}
try {
int[] fill_value = {-1};
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, VDSH5dims, null);
H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, VDSH5dims, null);
H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
H5.H5Pset_fill_value(H5dcplid, HDF5Constants.H5T_NATIVE_INT, fill_value);
}
catch (Throwable err) {
@@ -151,25 +166,42 @@ public class TestH5Pvirtual {
}
@Before
public void createH5file()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
public void createH5file() throws NullPointerException, HDF5Exception
{
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
_createH5File(HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
assertTrue("TestH5Pvirtual.createH5file: H5.H5Pcreate: ", H5dapl_id > 0);
}
}
@After
public void deleteH5file() throws HDF5LibraryException {
public void deleteH5file() throws HDF5LibraryException
{
if (H5dapl_id > 0)
try {H5.H5Pclose(H5dapl_id);} catch (Exception ex) {}
try {
H5.H5Pclose(H5dapl_id);
}
catch (Exception ex) {
}
if (H5dcplid > 0)
try {H5.H5Pclose(H5dcplid);} catch (Exception ex) {}
try {
H5.H5Pclose(H5dcplid);
}
catch (Exception ex) {
}
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dsid);
}
catch (Exception ex) {
}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
try {
H5.H5Fclose(H5fid);
}
catch (Exception ex) {
}
for (int i = 0; i < 3; i++) {
_deleteFile(SRC_FILE[i]);
}
@@ -178,12 +210,13 @@ public class TestH5Pvirtual {
}
@Test
public void testH5Pvirtual_storage() {
public void testH5Pvirtual_storage()
{
int layout = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
layout = H5.H5Pget_layout (H5dcplid);
layout = H5.H5Pget_layout(H5dcplid);
}
catch (Throwable err) {
err.printStackTrace();
@@ -191,15 +224,24 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
assertTrue("testH5Pvirtual_storage", HDF5Constants.H5D_VIRTUAL == layout);
}
@Test
public void testH5Pget_virtual_count() {
public void testH5Pget_virtual_count()
{
long num_map = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
@@ -212,21 +254,30 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
assertTrue("testH5Pget_virtual_count: "+num_map, num_map >= 0);
assertTrue("testH5Pget_virtual_count: " + num_map, num_map >= 0);
assertEquals(3, num_map);
}
@Test
public void testH5Pget_source_filename() throws Throwable {
public void testH5Pget_source_filename() throws Throwable
{
String filename = null;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
filename = (H5.H5Pget_virtual_filename (H5dcplid, 2));
filename = (H5.H5Pget_virtual_filename(H5dcplid, 2));
}
catch (Throwable err) {
err.printStackTrace();
@@ -234,20 +285,29 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
assertTrue("testH5Pget_source_filename: "+filename, filename.compareTo("v-2.h5") == 0);
assertTrue("testH5Pget_source_filename: " + filename, filename.compareTo("v-2.h5") == 0);
}
@Test
public void testH5Pget_source_datasetname() throws Throwable {
public void testH5Pget_source_datasetname() throws Throwable
{
String datasetname = null;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
datasetname = H5.H5Pget_virtual_dsetname (H5dcplid, 1);
datasetname = H5.H5Pget_virtual_dsetname(H5dcplid, 1);
}
catch (Throwable err) {
err.printStackTrace();
@@ -255,21 +315,30 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
assertTrue("testH5Pget_source_datasetname: "+datasetname, datasetname.compareTo("B") == 0);
assertTrue("testH5Pget_source_datasetname: " + datasetname, datasetname.compareTo("B") == 0);
}
@Test
public void testH5Pget_selection_source_dataset() throws Throwable {
long src_space = HDF5Constants.H5I_INVALID_HID;
public void testH5Pget_selection_source_dataset() throws Throwable
{
long src_space = HDF5Constants.H5I_INVALID_HID;
long src_selection = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
src_space = H5.H5Pget_virtual_srcspace (H5dcplid, 0);
src_space = H5.H5Pget_virtual_srcspace(H5dcplid, 0);
src_selection = H5.H5Sget_select_type(src_space);
}
catch (Throwable err) {
@@ -278,17 +347,30 @@ public class TestH5Pvirtual {
}
finally {
if (src_space > 0)
try {H5.H5Sclose(src_space);} catch (Exception ex) {}
try {
H5.H5Sclose(src_space);
}
catch (Exception ex) {
}
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
assertTrue("testH5Pget_selection_source_dataset", src_selection == HDF5Constants.H5S_SEL_ALL);
}
@Test
public void testH5Pget_mapping_parameters() {
public void testH5Pget_mapping_parameters()
{
long num_map = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
@@ -302,22 +384,22 @@ public class TestH5Pvirtual {
}
for (int i = 0; i < num_map; i++) {
int vselection = -1;
long vspace = -1;
long nblocks; // Number of hyperslab blocks
long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
long[] start = {i, 0};
long[] stride = {1, 1};
long[] count = {1, 1};
long[] block = {1, VDSDIM_Y};
long q_start[] = new long[2];
long q_stride[] = new long[2];
long q_count[] = new long[2];
long q_block[] = new long[2];
long vspace = -1;
long nblocks; // Number of hyperslab blocks
long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
long[] start = {i, 0};
long[] stride = {1, 1};
long[] count = {1, 1};
long[] block = {1, VDSDIM_Y};
long q_start[] = new long[2];
long q_stride[] = new long[2];
long q_count[] = new long[2];
long q_block[] = new long[2];
boolean is_regular = false;
try {
try {
vspace = H5.H5Pget_virtual_vspace (H5dcplid, i);
vspace = H5.H5Pget_virtual_vspace(H5dcplid, i);
}
catch (Throwable err) {
err.printStackTrace();
@@ -330,7 +412,8 @@ public class TestH5Pvirtual {
err.printStackTrace();
fail("H5.H5Sget_select_type: " + err);
}
assertTrue("testH5Pget_mapping_parameters["+i+"]", vselection == HDF5Constants.H5S_SEL_HYPERSLABS);
assertTrue("testH5Pget_mapping_parameters[" + i + "]",
vselection == HDF5Constants.H5S_SEL_HYPERSLABS);
// Verify that there is only one block
nblocks = H5.H5Sget_select_hyper_nblocks(vspace);
@@ -340,30 +423,38 @@ public class TestH5Pvirtual {
H5.H5Sget_select_hyper_blocklist(vspace, 0, nblocks, blocks);
// Verify that the correct block is defined
assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [0]: "+blocks[0], start[0] == blocks[0]);
assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [1]: "+blocks[1], start[1] == blocks[1]);
assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [2]: "+blocks[2], (block[0]-1+i) == blocks[2]);
assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [3]: "+blocks[3], (block[1]-1) == blocks[3]);
assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [0]: " + blocks[0],
start[0] == blocks[0]);
assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [1]: " + blocks[1],
start[1] == blocks[1]);
assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [2]: " + blocks[2],
(block[0] - 1 + i) == blocks[2]);
assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [3]: " + blocks[3],
(block[1] - 1) == blocks[3]);
// We also can use new APIs to get start, stride, count and block
is_regular = H5.H5Sis_regular_hyperslab(vspace);
assertTrue("H5.H5Sis_regular_hyperslab", is_regular);
H5.H5Sget_regular_hyperslab (vspace, q_start, q_stride, q_count, q_block);
H5.H5Sget_regular_hyperslab(vspace, q_start, q_stride, q_count, q_block);
// Verify the hyperslab parameters
for(int u = 0; u < 2; u++) {
for (int u = 0; u < 2; u++) {
assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]);
assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]);
assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]);
assertTrue("H5Sget_regular_hyperslab, block", block[u] == q_block[u]);
}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.testH5Pget_mapping_parameters: " + err);
}
finally {
if (vspace > 0)
try {H5.H5Sclose(vspace);} catch (Exception ex) {}
try {
H5.H5Sclose(vspace);
}
catch (Exception ex) {
}
}
}
}
@@ -373,16 +464,25 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Pset_get_virtual_view() {
public void testH5Pset_get_virtual_view()
{
int ret_val = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
ret_val = H5.H5Pget_virtual_view(H5dapl_id);
assertTrue("H5Pget_virtual_view", ret_val >= 0);
@@ -398,16 +498,25 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Pset_get_virtual_printf_gap() {
public void testH5Pset_get_virtual_printf_gap()
{
long ret_val = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
ret_val = H5.H5Pget_virtual_printf_gap(H5dapl_id);
assertTrue("H5Pget_virtual_printf_gap", ret_val >= 0);
@@ -423,14 +532,23 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dssid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Pset_virtual_prefix() {
public void testH5Pset_virtual_prefix()
{
String prefix = "tmp";
try {
H5.H5Pset_virtual_prefix(H5dapl_id, prefix);
@@ -442,14 +560,16 @@ public class TestH5Pvirtual {
}
@Test(expected = NullPointerException.class)
public void testH5Pset_virtual_prefix_null() throws Throwable{
public void testH5Pset_virtual_prefix_null() throws Throwable
{
H5.H5Pset_virtual_prefix(H5dapl_id, null);
}
@Test
public void testH5Pget_virtual_prefix() {
public void testH5Pget_virtual_prefix()
{
String prefix = "tmp";
String pre = "";
String pre = "";
try {
H5.H5Pset_virtual_prefix(H5dapl_id, prefix);