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Add java to format source (#1690)

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This commit is contained in:
Allen Byrne
2022-04-25 20:32:50 -05:00
committed by GitHub
parent d19d9b4c8a
commit 41a36efde1
155 changed files with 12051 additions and 9135 deletions
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149
java/test/TestH5PData.java
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@@ -31,44 +31,61 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5PData {
@Rule public TestName testname = new TestName();
@Rule
public TestName testname = new TestName();
private static final String H5_FILE = "testPD.h5";
private static final int DIM_X = 12;
private static final int DIM_Y = 18;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
double windchillF[][] =
{{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
{34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
{32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
{30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
{29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
{28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
{28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
{27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
{26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
{26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
{25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
{25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}
};
private static final int DIM_X = 12;
private static final int DIM_Y = 18;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = {DIM_X, DIM_Y};
double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0,
-40.0, -46.0, -52.0, -57.0, -63.0},
{34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0,
-41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
{32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0,
-45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
{30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0,
-48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
{29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0,
-51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
{28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0,
-53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
{28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0,
-55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
{27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0,
-57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
{26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0,
-58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
{26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0,
-60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
{25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0,
-61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
{25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0,
-62.0, -69.0, -76.0, -84.0, -91.0, -98.0}};
private final void _deleteFile(String filename) {
private final void _deleteFile(String filename)
{
File file = new File(filename);
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
try {
file.delete();
}
catch (SecurityException e) {
}
}
}
private final long _createFloatDataset(long fid, long dsid, String name, long dapl) {
private final long _createFloatDataset(long fid, long dsid, String name, long dapl)
{
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -80,49 +97,67 @@ public class TestH5PData {
}
@Before
public void createH5file()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
public void createH5file() throws NullPointerException, HDF5Exception
{
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5PData.createH5file: " + err);
}
assertTrue("TestH5PData.createH5file: H5.H5Fcreate: ",H5fid > 0);
assertTrue("TestH5PData.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
assertTrue("TestH5PData.createH5file: _createFloatDataset: ",H5did > 0);
assertTrue("TestH5PData.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5PData.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
assertTrue("TestH5PData.createH5file: _createFloatDataset: ", H5did > 0);
assertTrue(plist_id > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
public void deleteH5file() throws HDF5LibraryException {
public void deleteH5file() throws HDF5LibraryException
{
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
try {
H5.H5Sclose(H5dsid);
}
catch (Exception ex) {
}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
try {
H5.H5Dclose(H5did);
}
catch (Exception ex) {
}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
try {
H5.H5Fclose(H5fid);
}
catch (Exception ex) {
}
_deleteFile(H5_FILE);
if (plist_id > 0)
try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
try {
H5.H5Pclose(plist_id);
}
catch (Exception ex) {
}
System.out.println();
}
@Test
public void testH5Pdata_transform() {
String f_to_c = "(5/9.0)*(x-32)";
public void testH5Pdata_transform()
{
String f_to_c = "(5/9.0)*(x-32)";
double windchillFread[][] = new double[DIM_X][DIM_Y];
double windchillC;
NumberFormat formatter = new DecimalFormat("#0.000");
@@ -130,38 +165,40 @@ public class TestH5PData {
try {
H5.H5Pset_data_transform(plist_id, f_to_c);
H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
plist_id, windchillF);
plist_id, windchillF);
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, windchillFread);
HDF5Constants.H5P_DEFAULT, windchillFread);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pdata_transform: " + err);
}
for(int row = 0; row < DIM_X; row++)
for(int col = 0; col < DIM_Y; col++) {
windchillC = (5/9.0)*(windchillF[row][col]-32);
String Cstr = formatter.format(windchillC);
for (int row = 0; row < DIM_X; row++)
for (int col = 0; col < DIM_Y; col++) {
windchillC = (5 / 9.0) * (windchillF[row][col] - 32);
String Cstr = formatter.format(windchillC);
String Fread = formatter.format(windchillFread[row][col]);
assertTrue("H5Pdata_transform: <"+row+","+col+">"+Fread+"="+Cstr, Fread.compareTo(Cstr)==0);
assertTrue("H5Pdata_transform: <" + row + "," + col + ">" + Fread + "=" + Cstr,
Fread.compareTo(Cstr) == 0);
}
}
@Test
public void testH5P_buffer() {
public void testH5P_buffer()
{
long default_size = 0;
long size = 0;
long size = 0;
try {
default_size = H5.H5Pget_buffer_size(plist_id);
H5.H5Pset_buffer_size(plist_id, DIM_X*DIM_Y);
H5.H5Pset_buffer_size(plist_id, DIM_X * DIM_Y);
size = H5.H5Pget_buffer_size(plist_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5P_buffer fail: " + err);
}
assertTrue("H5P_buffer default: "+default_size, default_size==1024*1024);
assertTrue("H5P_buffer size: "+size, size==DIM_X*DIM_Y);
assertTrue("H5P_buffer default: " + default_size, default_size == 1024 * 1024);
assertTrue("H5P_buffer size: " + size, size == DIM_X * DIM_Y);
}
}