philipp/hdf5
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Add java to format source (#1690)

Browse Source
This commit is contained in:
Allen Byrne
2022-04-25 20:32:50 -05:00
committed by GitHub
parent d19d9b4c8a
commit 41a36efde1
155 changed files with 12051 additions and 9135 deletions
Download Patch File Download Diff File Expand all files Collapse all files

313
java/test/TestH5G.java
View File

@@ -31,20 +31,22 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5G {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testG.h5";
private static final String H5_FILE2 = "testG2.h5";
private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12",
"/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" };
private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
@Rule
public TestName testname = new TestName();
private static final String H5_FILE = "testG.h5";
private static final String H5_FILE2 = "testG2.h5";
private static final String[] GROUPS = {"/G1", "/G1/G11", "/G1/G12", "/G1/G11/G111",
"/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114"};
private static final String[] GROUPS2 = {"/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
private final long _createGroup(long fid, String name) {
private final long _createGroup(long fid, String name)
{
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -55,41 +57,51 @@ public class TestH5G {
return gid;
}
private final long _createGroup2(long fid, String name) {
long gid = HDF5Constants.H5I_INVALID_HID;
private final long _createGroup2(long fid, String name)
{
long gid = HDF5Constants.H5I_INVALID_HID;
long gcpl = HDF5Constants.H5I_INVALID_HID;
try {
gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl
gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); // create gcpl
}
catch (final Exception ex) {
fail("H5.H5Pcreate(): " + ex);
}
assertTrue("TestH5G._createGroup2: ", gcpl >= 0);
try {
H5.H5Pset_link_creation_order(gcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED
+ HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order
H5.H5Pset_link_creation_order(gcpl,
HDF5Constants.H5P_CRT_ORDER_TRACKED +
HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order
}
catch (final Exception ex) {
try {H5.H5Pclose(gcpl);} catch (final Exception exx) {}
try {
H5.H5Pclose(gcpl);
}
catch (final Exception exx) {
}
fail("H5.H5Pset_link_creation_order: " + ex);
}
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
gcpl, HDF5Constants.H5P_DEFAULT);
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, gcpl, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
finally {
try {H5.H5Pclose(gcpl);} catch (final Exception ex) {}
try {
H5.H5Pclose(gcpl);
}
catch (final Exception ex) {
}
}
assertTrue("TestH5G._createGroup2: ", gid > 0);
return gid;
}
private final long _openGroup(long fid, String name) {
private final long _openGroup(long fid, String name)
{
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
@@ -104,26 +116,31 @@ public class TestH5G {
return gid;
}
private final void _deleteFile(String filename) {
private final void _deleteFile(String filename)
{
File file = new File(filename);
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
try {
file.delete();
}
catch (SecurityException e) {
}
}
}
@Before
public void createH5file()
throws HDF5LibraryException, NullPointerException {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
public void createH5file() throws HDF5LibraryException, NullPointerException
{
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
HDF5Constants.H5P_DEFAULT);
H5fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -136,12 +153,20 @@ public class TestH5G {
for (int i = 0; i < GROUPS.length; i++) {
gid = _createGroup(H5fid, GROUPS[i]);
try {H5.H5Gclose(gid);} catch (Exception ex) {}
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
for (int i = 0; i < GROUPS2.length; i++) {
gid = _createGroup2(H5fid2, GROUPS2[i]);
try {H5.H5Gclose(gid);} catch (Exception ex) {}
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -149,20 +174,30 @@ public class TestH5G {
}
@After
public void deleteH5file() throws HDF5LibraryException {
public void deleteH5file() throws HDF5LibraryException
{
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
try {
H5.H5Fclose(H5fid);
}
catch (Exception ex) {
}
}
if (H5fid2 > 0) {
try {H5.H5Fclose(H5fid2);} catch (Exception ex) {}
try {
H5.H5Fclose(H5fid2);
}
catch (Exception ex) {
}
}
_deleteFile(H5_FILE);
_deleteFile(H5_FILE2);
System.out.println();
_deleteFile(H5_FILE);
_deleteFile(H5_FILE2);
System.out.println();
}
@Test
public void testH5Gopen() {
public void testH5Gopen()
{
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {
@@ -182,7 +217,8 @@ public class TestH5G {
}
@Test
public void testH5Gget_create_plist() {
public void testH5Gget_create_plist()
{
long gid = HDF5Constants.H5I_INVALID_HID;
long pid = HDF5Constants.H5I_INVALID_HID;
@@ -214,7 +250,8 @@ public class TestH5G {
}
@Test
public void testH5Gget_info() {
public void testH5Gget_info()
{
H5G_info_t info = null;
for (int i = 0; i < GROUPS.length; i++) {
@@ -231,13 +268,13 @@ public class TestH5G {
}
@Test
public void testH5Gget_info_by_name() {
public void testH5Gget_info_by_name()
{
H5G_info_t info = null;
for (int i = 0; i < GROUPS.length; i++) {
try {
info = H5.H5Gget_info_by_name(H5fid, GROUPS[i],
HDF5Constants.H5P_DEFAULT);
info = H5.H5Gget_info_by_name(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -248,13 +285,13 @@ public class TestH5G {
}
@Test
public void testH5Gget_info_by_idx() {
public void testH5Gget_info_by_idx()
{
H5G_info_t info = null;
for (int i = 0; i < 2; i++) {
try {
info = H5.H5Gget_info_by_idx(H5fid, "/G1",
HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
i, HDF5Constants.H5P_DEFAULT);
info = H5.H5Gget_info_by_idx(H5fid, "/G1", HDF5Constants.H5_INDEX_NAME,
HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -265,7 +302,8 @@ public class TestH5G {
}
@Test
public void testH5Gget_obj_info_all() {
public void testH5Gget_obj_info_all()
{
H5G_info_t info = null;
long gid = _openGroup(H5fid, GROUPS[0]);
@@ -278,27 +316,31 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_info: " + err);
}
finally {
try {H5.H5Gclose(gid);} catch (Exception ex) { }
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
assertNotNull("TestH5G.testH5Gget_obj_info_all: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all: number of links is empty", info.nlinks > 0);
String objNames[] = new String[(int) info.nlinks];
int objTypes[] = new int[(int) info.nlinks];
int lnkTypes[] = new int[(int) info.nlinks];
long objRefs[] = new long[(int) info.nlinks];
String objNames[] = new String[(int)info.nlinks];
int objTypes[] = new int[(int)info.nlinks];
int lnkTypes[] = new int[(int)info.nlinks];
long objRefs[] = new long[(int)info.nlinks];
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames,
objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME);
names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames, objTypes, lnkTypes, objRefs,
HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_obj_info_all: " + err);
}
assertTrue("number found[" + names_found + "] different than expected["
+ objNames.length + "]", names_found == objNames.length);
assertTrue("number found[" + names_found + "] different than expected[" + objNames.length + "]",
names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
assertNotNull("name #" + i + " does not exist", objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_all: ", objNames[i].length() > 0);
@@ -306,7 +348,8 @@ public class TestH5G {
}
@Test
public void testH5Gget_obj_info_all_gid() {
public void testH5Gget_obj_info_all_gid()
{
H5G_info_t info = null;
long gid = _openGroup(H5fid, GROUPS[0]);
@@ -315,25 +358,27 @@ public class TestH5G {
info = H5.H5Gget_info(gid);
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number of links is empty", info.nlinks > 0);
String objNames[] = new String[(int) info.nlinks];
long objRefs[] = new long[(int) info.nlinks];
int lnkTypes[] = new int[(int) info.nlinks];
int objTypes[] = new int[(int) info.nlinks];
String objNames[] = new String[(int)info.nlinks];
long objRefs[] = new long[(int)info.nlinks];
int lnkTypes[] = new int[(int)info.nlinks];
int objTypes[] = new int[(int)info.nlinks];
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
objRefs, HDF5Constants.H5_INDEX_NAME);
names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objRefs,
HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_obj_info_all: " + err);
}
assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found + "] different than expected["
+ objNames.length + "]", names_found == objNames.length);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found +
"] different than expected[" + objNames.length + "]",
names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist", objNames[i]);
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist",
objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid: ", objNames[i].length() > 0);
}
}
@@ -342,12 +387,17 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_info: " + err);
}
finally {
try {H5.H5Gclose(gid);} catch (Exception ex) { }
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Gget_obj_info_all_gid2() {
public void testH5Gget_obj_info_all_gid2()
{
H5G_info_t info = null;
long gid = _openGroup(H5fid, GROUPS[1]);
@@ -356,25 +406,27 @@ public class TestH5G {
info = H5.H5Gget_info(gid);
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number of links is empty", info.nlinks > 0);
String objNames[] = new String[(int) info.nlinks];
long objRefs[] = new long[(int) info.nlinks];
int lnkTypes[] = new int[(int) info.nlinks];
int objTypes[] = new int[(int) info.nlinks];
String objNames[] = new String[(int)info.nlinks];
long objRefs[] = new long[(int)info.nlinks];
int lnkTypes[] = new int[(int)info.nlinks];
int objTypes[] = new int[(int)info.nlinks];
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
objRefs, HDF5Constants.H5_INDEX_NAME);
names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objRefs,
HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_obj_info_all: " + err);
}
assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found + "] different than expected["
+ objNames.length + "]", names_found == objNames.length);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found +
"] different than expected[" + objNames.length + "]",
names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist", objNames[i]);
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist",
objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: ", objNames[i].length() > 0);
}
}
@@ -383,73 +435,89 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_info: " + err);
}
finally {
try {H5.H5Gclose(gid);} catch (Exception ex) { }
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
}
@Test
public void testH5Gget_obj_info_max() {
long gid = _openGroup(H5fid, GROUPS[0]);
public void testH5Gget_obj_info_max()
{
long gid = _openGroup(H5fid, GROUPS[0]);
long groups_max_size = GROUPS.length + 1;
String objNames[] = new String[(int)groups_max_size];
int objTypes[] = new int[(int)groups_max_size];
int lnkTypes[] = new int[(int)groups_max_size];
long objRefs[] = new long[(int)groups_max_size];
String objNames[] = new String[(int)groups_max_size];
int objTypes[] = new int[(int)groups_max_size];
int lnkTypes[] = new int[(int)groups_max_size];
long objRefs[] = new long[(int)groups_max_size];
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
objRefs, groups_max_size);
names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objRefs, groups_max_size);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_max: H5.H5Gget_obj_info_max: " + err);
}
finally {
try {H5.H5Gclose(gid);} catch (Exception ex) { }
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
// expected number does not include root group
assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found + "] different than expected["
+ (GROUPS.length - 1) + "]", names_found == (GROUPS.length - 1));
for (int i = 0; i < GROUPS.length-1; i++) {
assertNotNull("TestH5G.testH5Gget_obj_info_max: name #"+i+" does not exist",objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length()>0);
assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found +
"] different than expected[" + (GROUPS.length - 1) + "]",
names_found == (GROUPS.length - 1));
for (int i = 0; i < GROUPS.length - 1; i++) {
assertNotNull("TestH5G.testH5Gget_obj_info_max: name #" + i + " does not exist", objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length() > 0);
}
}
@Test
public void testH5Gget_obj_info_max_limit() {
long gid = _openGroup(H5fid, GROUPS[0]);
public void testH5Gget_obj_info_max_limit()
{
long gid = _openGroup(H5fid, GROUPS[0]);
long groups_max_size = GROUPS.length - 3;
String objNames[] = new String[(int)groups_max_size];
int objTypes[] = new int[(int)groups_max_size];
int lnkTypes[] = new int[(int)groups_max_size];
long objRefs[] = new long[(int)groups_max_size];
String objNames[] = new String[(int)groups_max_size];
int objTypes[] = new int[(int)groups_max_size];
int lnkTypes[] = new int[(int)groups_max_size];
long objRefs[] = new long[(int)groups_max_size];
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
objRefs, groups_max_size);
names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objRefs, groups_max_size);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_max_limit: H5.H5Gget_obj_info_max: " + err);
}
finally {
try {H5.H5Gclose(gid);} catch (Exception ex) { }
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found + "] different than expected["
+ groups_max_size + "]", names_found == groups_max_size);
assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found +
"] different than expected[" + groups_max_size + "]",
names_found == groups_max_size);
for (int i = 0; i < objNames.length; i++) {
assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist", objNames[i]);
assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist",
objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_max_limit: ", objNames[i].length() > 0);
}
}
@Test
public void testH5Gget_obj_info_all_byIndexType() {
public void testH5Gget_obj_info_all_byIndexType()
{
H5G_info_t info = null;
long gid = _openGroup(H5fid2, GROUPS2[0]);
@@ -462,41 +530,44 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_info: " + err);
}
finally {
try {H5.H5Gclose(gid);} catch (Exception ex) { }
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
}
assertNotNull("TestH5G.testH5Gget_obj_info_all_byIndexType: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all_byIndexType: number of links is empty", info.nlinks > 0);
String objNames[] = new String[(int) info.nlinks];
int objTypes[] = new int[(int) info.nlinks];
int lnkTypes[] = new int[(int) info.nlinks];
long objRefs[] = new long[(int) info.nlinks];
String objNames[] = new String[(int)info.nlinks];
int objTypes[] = new int[(int)info.nlinks];
int lnkTypes[] = new int[(int)info.nlinks];
long objRefs[] = new long[(int)info.nlinks];
try {
H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames,
objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_CRT_ORDER);
H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objRefs,
HDF5Constants.H5_INDEX_CRT_ORDER);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err);
}
assertEquals("G12",objNames[1]);
assertEquals("G13", objNames[2] );
assertEquals("G11", objNames[3] );
assertEquals("G12", objNames[1]);
assertEquals("G13", objNames[2]);
assertEquals("G11", objNames[3]);
try {
H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames,
objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME);
H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objRefs,
HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err);
}
assertEquals("G12",objNames[1]);
assertEquals("G13", objNames[2] );
assertEquals("G14", objNames[3] );
assertEquals("G12", objNames[1]);
assertEquals("G13", objNames[2]);
assertEquals("G14", objNames[3]);
}
}