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Much normalization with develop (#701)

Browse Source 
* Brings CMake updates from develop

* Brings reduction in pedantic casts from develop

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Formatted source

* Bring over some VOL registration changes

* VOL cleanup

* H5VL_request_status_t substitutions

* H5F.c cleanup

* Minor API tweaks from develop

* Moves H5G package init/teardown to H5Gint.c

* H5G cleanup

* H5M cleanup

* H5SM cleanup

* H5T cleanup

* H5R cleanup

* H5Lpublic.h cleanup

* H5L cleanup

* H5O cleanup

* H5A, H5CS, and H5AC cleanup

* Moved H5A init/teardown code to H5Aint.c

* Moves H5D I/O functions to H5D.c

* H5D cleanup

* Misc minor cleanup

* H5P close cleanup

* H5Tpublic.h cleanup

* Fixes err_compat test

* H5PLpublic.h cleanup

* Updates H5Ppublic.h

* H5Fpublic.h updates

* H5A.c cleanup

* Brings over H5Aexists and related changes

* Brings CMake shell testing changes from develop

* Close callback changes

* H5R and H5Tcommit normalization

* err_compat test works now

* H5O tweaks

* Updates VOL registration code

* Brings over H5VL_create_object

* H5Tconv.c reformatting

* H5T.c tweaks

* Brings datatype and reference updates from develop

* Brings VOL plugin loading changes from develop

* Brings event sets from develop

* Brings async functions over

* Tools changes

* Brings over many tools changes from develop

* Brings VOL flags from develop

* Fixes h5dump double/float tests

* Updates h5repack tests

* Brings h5diff test changes from develop

* Last h5dump changes

* Brings test changes from develop

* Committing clang-format changes

* Tidied h5_testing()

* Brings chunk iteration code + misc from develop

* Updates vds test

* Enables external link parallel test

* Brings updated property lists from develop

* H5G changes from develop

* H5MF cleanup

* Brings vfd_swmr test back into CMake

* Updates threadsafe test

* Updates plist test

* Brings recent changes from develop

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
This commit is contained in:
Dana Robinson
2021-05-28 07:10:51 -07:00
committed by GitHub
parent e22687912d
commit 2ddf5fbd92
369 changed files with 44394 additions and 10800 deletions
Download Patch File Download Diff File Expand all files Collapse all files

287
tools/test/h5dump/h5dumpgentest.c
View File

@@ -115,6 +115,8 @@
#define FILE85 "tgrpnullspace.h5"
#define FILE86 "err_attr_dspace.h5"
#define FILE87 "tintsnodata.h5"
#define FILE88 "tldouble_scalar.h5"
#define FILE89 "tfloatsattrs.h5"
/*-------------------------------------------------------------------------
* prototypes
@@ -153,13 +155,13 @@ static size_t H5Z_filter_dynlibud(unsigned int flags, size_t cd_nelmts, const un
/* This message derives from H5Z */
const H5Z_class2_t H5Z_DYNLIBUD[1] = {{
H5Z_CLASS_T_VERS, /* H5Z_class_t version */
H5Z_FILTER_DYNLIBUD, /* Filter id number */
1, 1, /* Encoding and decoding enabled */
"dynlibud", /* Filter name for debugging */
NULL, /* The "can apply" callback */
NULL, /* The "set local" callback */
(H5Z_func_t)H5Z_filter_dynlibud, /* The actual filter function */
H5Z_CLASS_T_VERS, /* H5Z_class_t version */
H5Z_FILTER_DYNLIBUD, /* Filter id number */
1, 1, /* Encoding and decoding enabled */
"dynlibud", /* Filter name for debugging */
NULL, /* The "can apply" callback */
NULL, /* The "set local" callback */
H5Z_filter_dynlibud, /* The actual filter function */
}};
/* A UD link traversal function. Shouldn't actually be called. */
@@ -395,6 +397,15 @@ typedef struct s1_t {
#define F83_RANK 1
#define F83_ARRAYDIM 3
/* "FILE89" macros */
#define F89_XDIM 8
#define F89_DATASETF32 "DS32BITS"
#define F89_YDIM32 32
#define F89_DATASETF64 "DS64BITS"
#define F89_YDIM64 64
#define F89_DATASETF128 "DS128BITS"
#define F89_YDIM128 128
static void
gent_group(void)
{
@@ -2106,7 +2117,7 @@ gent_objref(void)
uint32_t * tu32; /* Temporary pointer to uint32 data */
int i; /* counting variables */
const char *write_comment = "Foo!"; /* Comments for group */
hbool_t supports_comments = FALSE;
uint64_t supports_comments = 0;
/* Allocate write & read buffers */
wbuf = (hobj_ref_t *)HDmalloc(sizeof(hobj_ref_t) * SPACE1_DIM1);
@@ -2126,7 +2137,7 @@ gent_objref(void)
H5VLquery_optional(fid1, H5VL_SUBCLS_OBJECT, H5VL_NATIVE_OBJECT_SET_COMMENT, &supports_comments);
/* Set group's comment */
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment(group, write_comment);
/* Create a dataset (inside Group1) */
@@ -3677,9 +3688,9 @@ gent_empty(void)
static void
gent_group_comments(void)
{
hid_t fid = H5I_INVALID_HID;
hid_t group = H5I_INVALID_HID;
hbool_t supports_comments = FALSE;
hid_t fid = H5I_INVALID_HID;
hid_t group = H5I_INVALID_HID;
uint64_t supports_comments = 0;
fid = H5Fcreate(FILE33, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
@@ -3688,69 +3699,69 @@ gent_group_comments(void)
/* / */
group = H5Gcreate2(fid, "/g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g1", "Comment for group /g1", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g2", "Comment for group /g2", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g3", "Comment for group /g3", H5P_DEFAULT);
H5Gclose(group);
/* /g1 */
group = H5Gcreate2(fid, "/g1/g1.1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g1/g1.1", "Comment for group /g1/g1.1", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g1/g1.2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g1/g1.2", "Comment for group /g1/g1.2", H5P_DEFAULT);
H5Gclose(group);
/* /g2 */
group = H5Gcreate2(fid, "/g2/g2.1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g2/g2.1", "Comment for group /g2/g2.1", H5P_DEFAULT);
H5Gclose(group);
/* /g3 */
group = H5Gcreate2(fid, "/g3/g3.1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g3/g3.1", "Comment for group /g3/g3.1", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g3/g3.2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g3/g3.2", "Comment for group /g3/g3.2", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g3/g3.3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g3/g3.3", "Comment for group /g3/g3.3", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g3/g3.4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g3/g3.4", "Comment for group /g3/g3.4", H5P_DEFAULT);
H5Gclose(group);
/* /g2/g2.1 */
group = H5Gcreate2(fid, "/g2/g2.1/g2.1.1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g2/g2.1/g2.1.1", "Comment for group /g2/g2.1/g2.1.1", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g2/g2.1/g2.1.2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g2/g2.1/g2.1.2", "Comment for group /g2/g2.1/g2.1.2", H5P_DEFAULT);
H5Gclose(group);
group = H5Gcreate2(fid, "/g2/g2.1/g2.1.3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(group, "/g2/g2.1/g2.1.3", "Comment for group /g2/g2.1/g2.1.3", H5P_DEFAULT);
H5Gclose(group);
/* /glongcomment */
group = H5Gcreate2(fid, "/glongcomment", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (supports_comments)
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED)
H5Oset_comment_by_name(
group, "/glongcomment",
"Comment for group /glongcomment with a really, really, really long, long, long comment",
@@ -4008,7 +4019,7 @@ gent_char(void)
*
* Return: void
*
* Programmer: pvn@ncsa.uiuc.edu
* Programmer: Pedro Vicente
*
* Date: May 28, 2003
*
@@ -4435,7 +4446,7 @@ write_attr_in(hid_t loc_id, const char *dset_name, /* for saving reference to da
*
* Return: void
*
* Programmer: pvn@ncsa.uiuc.edu
* Programmer: Pedro Vicente
*
* Date: May 28, 2003
*
@@ -4871,7 +4882,7 @@ write_dset_in(hid_t loc_id, const char *dset_name, /* for saving reference to da
*
* Return: void
*
* Programmer: pvn@ncsa.uiuc.edu
* Programmer: Pedro Vicente
*
* Date: May 19, 2003
*
@@ -4940,7 +4951,7 @@ gent_attr_all(void)
*
* Purpose: utility function to write an attribute
*
* Programmer: pvn@ncsa.uiuc.edu
* Programmer: Pedro Vicente
*
* Date: May 19, 2003
*
@@ -4978,7 +4989,7 @@ write_attr(hid_t loc_id, int rank, hsize_t *dims, const char *attr_name, hid_t t
*
* Return:
*
* Programmer: pvn@ncsa.uiuc.edu
* Programmer: Pedro Vicente
*
* Date: May 27, 2003
*
@@ -5449,7 +5460,7 @@ gent_filters(void)
int buf1[DIM1][DIM2];
int i, j, n;
int H5_ATTR_NDEBUG_UNUSED ret;
hbool_t supports_comments = FALSE;
uint64_t supports_comments = 0;
for (i = n = 0; i < DIM1; i++) {
for (j = 0; j < DIM2; j++) {
@@ -5481,7 +5492,7 @@ gent_filters(void)
ret = make_dset(fid, "compact", sid, H5T_NATIVE_INT, dcpl, buf1);
HDassert(ret >= 0);
if (supports_comments) {
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED) {
ret = H5Oset_comment_by_name(fid, "compact", "This is a dataset with compact storage", H5P_DEFAULT);
HDassert(ret >= 0);
}
@@ -5492,7 +5503,7 @@ gent_filters(void)
ret = make_dset(fid, "contiguous", sid, H5T_NATIVE_INT, dcpl, buf1);
HDassert(ret >= 0);
if (supports_comments) {
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED) {
ret = H5Oset_comment_by_name(fid, "contiguous", "This is a dataset with contiguous storage",
H5P_DEFAULT);
HDassert(ret >= 0);
@@ -5507,7 +5518,7 @@ gent_filters(void)
ret = make_dset(fid, "chunked", sid, H5T_NATIVE_INT, dcpl, buf1);
HDassert(ret >= 0);
if (supports_comments) {
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED) {
ret = H5Oset_comment_by_name(fid, "chunked", "This is a dataset with chunked storage", H5P_DEFAULT);
HDassert(ret >= 0);
}
@@ -5723,7 +5734,7 @@ gent_filters(void)
ret = H5Tcommit2(fid, "mytype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
HDassert(ret >= 0);
if (supports_comments) {
if (supports_comments & H5VL_OPT_QUERY_SUPPORTED) {
ret = H5Oset_comment_by_name(fid, "mytype", "This is a commited datatype", H5P_DEFAULT);
HDassert(ret >= 0);
}
@@ -6335,6 +6346,57 @@ error:
return -1;
}
/*-------------------------------------------------------------------------
* Function: gent_ldouble_scalar
*
* Purpose: make file with a long double scalar dataset
*
*-------------------------------------------------------------------------
*/
static int
gent_ldouble_scalar(void)
{
hid_t fid;
hid_t did;
hid_t tid;
hid_t sid;
hsize_t dims[1] = {6};
long double buf[6] = {0.0, 1.0, 2.0, 3.0, 4.0, 5.0};
if ((fid = H5Fcreate(FILE88, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if ((sid = H5Screate(H5S_SCALAR)) < 0)
goto error;
if ((tid = H5Tarray_create2(H5T_NATIVE_LDOUBLE, 1, dims)) < 0)
goto error;
if (H5Tget_size(tid) == 0)
goto error;
if ((did = H5Dcreate2(fid, "dset", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto error;
if (H5Sclose(sid) < 0)
goto error;
if (H5Tclose(tid) < 0)
goto error;
if (H5Dclose(did) < 0)
goto error;
if (H5Fclose(fid) < 0)
goto error;
return 0;
error:
HDprintf("error !\n");
return -1;
}
/*-------------------------------------------------------------------------
* Function: gent_binary
*
@@ -6499,7 +6561,6 @@ out:
H5Fclose(fid);
}
H5E_END_TRY;
return;
}
/*-------------------------------------------------------------------------
@@ -6685,7 +6746,6 @@ out:
H5Fclose(fid);
}
H5E_END_TRY;
return;
}
/*-------------------------------------------------------------------------
@@ -6945,7 +7005,6 @@ out:
H5Fclose(fid);
}
H5E_END_TRY;
return;
}
/*-------------------------------------------------------------------------
@@ -10160,6 +10219,152 @@ gent_intsattrs(void)
HDfree(asetdbl);
}
/*-------------------------------------------------------------------------
* Function: gent_floatsattrs
*
* Purpose: Generate a file to be used in the h5dump tests.
* Three datasets of 4, 8 and 16 bytes of float types are created.
* Fill them with raw data such that no bit will be all zero in a dataset.
*-------------------------------------------------------------------------
*/
static void
gent_floatsattrs(void)
{
hid_t fid = H5I_INVALID_HID;
hid_t tid = H5I_INVALID_HID;
hid_t attr = H5I_INVALID_HID;
hid_t dataset = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t aspace = H5I_INVALID_HID;
hsize_t dims[2], adims[1];
float ** dset32 = NULL;
double ** dset64 = NULL;
long double **dset128 = NULL;
float * aset32 = NULL;
double * aset64 = NULL;
long double *aset128 = NULL;
float val32bits;
double val64bits;
long double val128bits;
unsigned int i, j;
/* Create arrays */
H5TEST_ALLOCATE_2D_ARRAY(dset32, float, F89_XDIM, F89_YDIM32);
H5TEST_ALLOCATE_2D_ARRAY(dset64, double, F89_XDIM, F89_YDIM64);
H5TEST_ALLOCATE_2D_ARRAY(dset128, long double, F89_XDIM, F89_YDIM128);
aset32 = HDcalloc(F89_XDIM * F89_YDIM32, sizeof(float));
aset64 = HDcalloc(F89_XDIM * F89_YDIM64, sizeof(double));
aset128 = HDcalloc(F89_XDIM * F89_YDIM128, sizeof(long double));
fid = H5Fcreate(FILE89, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if ((tid = H5Tcopy(H5T_NATIVE_LDOUBLE)) < 0)
goto error;
if (H5Tget_size(tid) == 0)
goto error;
/* Dataset of 32 bits float */
dims[0] = F89_XDIM;
dims[1] = F89_YDIM32;
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F89_DATASETF32, H5T_IEEE_F32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
val32bits = (float)F89_YDIM32;
for (i = 0; i < dims[0]; i++) {
dset32[i][0] = val32bits;
aset32[i * dims[1]] = dset32[i][0];
for (j = 1; j < dims[1]; j++) {
dset32[i][j] = (float)(j * dims[0] + i) / (float)F89_YDIM32;
aset32[i * dims[1] + j] = dset32[i][j];
}
val32bits -= (float)1;
}
H5Dwrite(dataset, H5T_IEEE_F32LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset32[0]);
/* Attribute of 32 bits float */
adims[0] = F89_XDIM * F89_YDIM32;
aspace = H5Screate_simple(1, adims, NULL);
attr = H5Acreate2(dataset, F89_DATASETF32, H5T_IEEE_F32LE, aspace, H5P_DEFAULT, H5P_DEFAULT);
H5Awrite(attr, H5T_IEEE_F32LE, aset32);
H5Aclose(attr);
H5Sclose(aspace);
H5Sclose(space);
H5Dclose(dataset);
/* Dataset of 64 bits double */
dims[0] = F89_XDIM;
dims[1] = F89_YDIM64;
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F89_DATASETF64, H5T_IEEE_F64LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
val64bits = (double)F89_YDIM64;
for (i = 0; i < dims[0]; i++) {
dset64[i][0] = val64bits;
aset64[i * dims[1]] = dset64[i][0];
for (j = 1; j < dims[1]; j++) {
dset64[i][j] = (double)(j * dims[0] + i) / (double)F89_YDIM64;
aset64[i * dims[1] + j] = dset64[i][j];
}
val64bits -= (double)1;
}
H5Dwrite(dataset, H5T_IEEE_F64LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset64[0]);
/* Attribute of 64 bits double */
adims[0] = F89_XDIM * F89_YDIM64;
aspace = H5Screate_simple(1, adims, NULL);
attr = H5Acreate2(dataset, F89_DATASETF64, H5T_IEEE_F64LE, aspace, H5P_DEFAULT, H5P_DEFAULT);
H5Awrite(attr, H5T_IEEE_F64LE, aset64);
H5Aclose(attr);
H5Sclose(aspace);
H5Sclose(space);
H5Dclose(dataset);
/* Dataset of 128 bits long double */
dims[0] = F89_XDIM;
dims[1] = F89_YDIM128;
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F89_DATASETF128, tid, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
val128bits = (long double)F89_YDIM128;
for (i = 0; i < dims[0]; i++) {
dset128[i][0] = val128bits;
aset128[i * dims[1]] = dset128[i][0];
for (j = 1; j < dims[1]; j++) {
dset128[i][j] = (long double)(j * dims[0] + i) / (long double)F89_YDIM128;
aset128[i * dims[1] + j] = dset128[i][j];
}
val128bits -= (long double)1;
}
H5Dwrite(dataset, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset128[0]);
/* Attribute of 128 bits long double */
adims[0] = F89_XDIM * F89_YDIM128;
aspace = H5Screate_simple(1, adims, NULL);
attr = H5Acreate2(dataset, F89_DATASETF128, tid, aspace, H5P_DEFAULT, H5P_DEFAULT);
H5Awrite(attr, tid, aset128);
H5Aclose(attr);
H5Sclose(aspace);
H5Sclose(space);
H5Dclose(dataset);
error:
H5Fclose(fid);
HDfree(dset32);
HDfree(dset64);
HDfree(dset128);
HDfree(aset32);
HDfree(aset64);
HDfree(aset128);
}
static void
gent_bitnopaquefields(void)
{
@@ -10872,7 +11077,7 @@ H5Z_filter_dynlibud(unsigned int flags, size_t cd_nelmts, const unsigned int *cd
return (0);
/* Assignment to eliminate unused parameter warning. */
cd_values = cd_values;
(void)cd_values;
if (flags & H5Z_FLAG_REVERSE) { /*read*/
/* Subtract the original value with MULTIPLIER */
@@ -11089,6 +11294,7 @@ main(void)
gent_aindices();
gent_longlinks();
gent_ldouble();
gent_ldouble_scalar();
gent_binary();
gent_bigdims();
gent_hyperslab();
@@ -11112,6 +11318,7 @@ main(void)
gent_compound_ints();
gent_intattrscalars();
gent_intsattrs();
gent_floatsattrs();
gent_bitnopaquefields();
gent_nodata();