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Develop clang format java (#1653)

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This commit is contained in:
Allen Byrne
2022-04-19 13:08:09 -05:00
committed by GitHub
parent 32ef796e47
commit 03c3a54695
162 changed files with 13298 additions and 10029 deletions
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113
java/examples/datasets/H5Ex_D_Nbit.java
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@@ -29,45 +29,46 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Nbit {
private static String FILENAME = "H5Ex_D_Nbit.h5";
private static String FILENAME = "H5Ex_D_Nbit.h5";
private static String DATASETNAME = "DS1";
private static final int DIM_X = 32;
private static final int DIM_Y = 64;
private static final int CHUNK_X = 4;
private static final int CHUNK_Y = 8;
private static final int RANK = 2;
private static final int NDIMS = 2;
private static final int DIM_X = 32;
private static final int DIM_Y = 64;
private static final int CHUNK_X = 4;
private static final int CHUNK_Y = 8;
private static final int RANK = 2;
private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
static {
static
{
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
H5Z_filter(int layout_type) {
this.code = layout_type;
}
H5Z_filter(int layout_type) { this.code = layout_type; }
public int getCode() {
return this.code;
}
public int getCode() { return this.code; }
public static H5Z_filter get(int code) {
return lookup.get(code);
}
public static H5Z_filter get(int code) { return lookup.get(code); }
}
private static boolean checkNbitFilter() {
private static boolean checkNbitFilter()
{
try {
// Check if N-Bit compression is available and can be used for both compression and decompression.
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_NBIT);
@@ -82,8 +83,8 @@ public class H5Ex_D_Nbit {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_NBIT);
if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
|| ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("N-Bit filter not available for encoding and decoding.");
return false;
}
@@ -94,14 +95,15 @@ public class H5Ex_D_Nbit {
return true;
}
private static void writeData() throws Exception {
long file_id = HDF5Constants.H5I_INVALID_HID;
private static void writeData() throws Exception
{
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dtype_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dtype_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = {DIM_X, DIM_Y};
long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -112,7 +114,7 @@ public class H5Ex_D_Nbit {
try {
// Create a new file using the default properties.
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
HDF5Constants.H5P_DEFAULT);
// Create dataspace. Setting maximum size to NULL sets the maximum
// size to be the current size.
@@ -130,12 +132,12 @@ public class H5Ex_D_Nbit {
H5.H5Pset_chunk(dcpl_id, NDIMS, chunk_dims);
// Create the dataset.
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, dtype_id, filespace_id, HDF5Constants.H5P_DEFAULT, dcpl_id,
HDF5Constants.H5P_DEFAULT);
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, dtype_id, filespace_id, HDF5Constants.H5P_DEFAULT,
dcpl_id, HDF5Constants.H5P_DEFAULT);
// Write the data to the dataset.
H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data);
H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -155,10 +157,11 @@ public class H5Ex_D_Nbit {
}
}
private static void readData() throws Exception {
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
private static void readData() throws Exception
{
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -192,14 +195,14 @@ public class H5Ex_D_Nbit {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
int[] flags = { 0 };
long[] cd_nelmts = { 1 };
int[] cd_values = { 0 };
String[] filter_name = { "" };
int[] filter_config = { 0 };
int filter_type = -1;
filter_type = H5
.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
int[] flags = {0};
long[] cd_nelmts = {1};
int[] cd_values = {0};
String[] filter_name = {""};
int[] filter_config = {0};
int filter_type = -1;
filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -234,7 +237,7 @@ public class H5Ex_D_Nbit {
try {
if (dataset_id >= 0) {
int status = H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
// Check if the read was successful.
if (status < 0)
System.out.print("Dataset read failed!");
@@ -280,14 +283,14 @@ public class H5Ex_D_Nbit {
catch (Exception e) {
e.printStackTrace();
}
}
public static void main(String[] args) {
public static void main(String[] args)
{
/*
* Check if N-Bit compression is available and can be used for both compression and decompression. Normally we
* do not perform error checking in these examples for the sake of clarity, but in this case we will make an
* exception because this filter is an optional part of the hdf5 library.
* Check if N-Bit compression is available and can be used for both compression and decompression.
* Normally we do not perform error checking in these examples for the sake of clarity, but in this
* case we will make an exception because this filter is an optional part of the hdf5 library.
*/
try {
if (H5Ex_D_Nbit.checkNbitFilter()) {